RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 B2RBV5 119 aa11.11□□□□□ -0.63
USP28-201ENST00000003302 TRAFD1O14545 582 aaPredicted RBP11.11□□□□□ -0.63
USP28-201ENST00000003302 CILPO75339 1184 aa11.11□□□□□ -0.63
USP28-201ENST00000003302 SLC8A3P57103 927 aa11.11□□□□□ -0.63
USP28-201ENST00000003302 CDK16Q00536 496 aa11.11□□□□□ -0.63
USP28-201ENST00000003302 ZBTB16Q05516 673 aa11.11□□□□□ -0.63
USP28-201ENST00000003302 MBTD1Q05BQ5 628 aa11.11□□□□□ -0.63
USP28-201ENST00000003302 VGLL4Q14135 290 aa11.11□□□□□ -0.63
USP28-201ENST00000003302 TMEM132AQ24JP5 1023 aa11.11□□□□□ -0.63
USP28-201ENST00000003302 TEX44Q53QW1 395 aa11.11□□□□□ -0.63
USP28-201ENST00000003302 ILDR2Q71H61 639 aa11.11□□□□□ -0.63
USP28-201ENST00000003302 TNS4Q8IZW8 715 aa11.11□□□□□ -0.63
USP28-201ENST00000003302 RIBC1Q8N443 379 aaPredicted RBP11.11□□□□□ -0.63
USP28-201ENST00000003302 CCDC185Q8N715 623 aa11.11□□□□□ -0.63
USP28-201ENST00000003302 ENDOVQ8N8Q3 282 aaKnown RBP11.11□□□□□ -0.63
USP28-201ENST00000003302 BBOF1Q8ND07 529 aa11.11□□□□□ -0.63
USP28-201ENST00000003302 RDM1Q8NG50 284 aa11.11□□□□□ -0.63
USP28-201ENST00000003302 C18orf25Q96B23 403 aaPredicted RBP11.11□□□□□ -0.63
USP28-201ENST00000003302 GRAMD1AQ96CP6 724 aa11.11□□□□□ -0.63
USP28-201ENST00000003302 TTC25Q96NG3 672 aa11.11□□□□□ -0.63
USP28-201ENST00000003302 COX16Q9P0S2 106 aa11.11□□□□□ -0.63
USP28-201ENST00000003302 SLC7A8Q9UHI5 535 aa11.11□□□□□ -0.63
USP28-201ENST00000003302 CAPN14A8MX76 684 aa11.1□□□□□ -0.63
USP28-201ENST00000003302 GOLGA8TH3BQL2 631 aa11.1□□□□□ -0.63
USP28-201ENST00000003302 I6L893 689 aaPredicted RBP11.1□□□□□ -0.63
USP28-201ENST00000003302 C6orf222P0C671 652 aaPredicted RBP11.1□□□□□ -0.63
USP28-201ENST00000003302 ZNF286BP0CG31 522 aa11.1□□□□□ -0.63
USP28-201ENST00000003302 RARBP10826 455 aa11.1□□□□□ -0.63
USP28-201ENST00000003302 VAV1P15498 845 aa11.1□□□□□ -0.63
USP28-201ENST00000003302 CCNG1P51959 295 aa11.1□□□□□ -0.63
USP28-201ENST00000003302 EFCAB12Q6NXP0 572 aa11.1□□□□□ -0.63
USP28-201ENST00000003302 DENND5BQ6ZUT9 1274 aa11.1□□□□□ -0.63
USP28-201ENST00000003302 CMC1Q7Z7K0 106 aa11.1□□□□□ -0.63
USP28-201ENST00000003302 CCDC124Q96CT7 223 aaKnown RBP11.1□□□□□ -0.63
USP28-201ENST00000003302 ADPGKQ9BRR6 497 aa11.1□□□□□ -0.63
USP28-201ENST00000003302 MRPL4Q9BYD3 311 aaKnown RBP11.1□□□□□ -0.63
USP28-201ENST00000003302 GOLGA2P5Q9HBQ8 144 aa11.1□□□□□ -0.63
USP28-201ENST00000003302 IRF6O14896 467 aa11.1□□□□□ -0.63
USP28-201ENST00000003302 DCTN3O75935 186 aa11.1□□□□□ -0.63
USP28-201ENST00000003302 ALDOAP04075 364 aaKnown RBP11.1□□□□□ -0.63
USP28-201ENST00000003302 STAG3L1P0CL83 205 aa11.1□□□□□ -0.63
USP28-201ENST00000003302 BAG6P46379 1132 aa11.1□□□□□ -0.63
USP28-201ENST00000003302 ZNF280AP59817 542 aaPredicted RBP11.1□□□□□ -0.63
USP28-201ENST00000003302 PDE1BQ01064 536 aa11.1□□□□□ -0.63
USP28-201ENST00000003302 ITGA7Q13683 1181 aa11.1□□□□□ -0.63
USP28-201ENST00000003302 TMEM154Q6P9G4 183 aa11.1□□□□□ -0.63
USP28-201ENST00000003302 PYDC1Q8WXC3 89 aa11.1□□□□□ -0.63
USP28-201ENST00000003302 INPP5DQ92835 1189 aa11.1□□□□□ -0.63
USP28-201ENST00000003302 APOPT1Q96IL0 206 aa11.1□□□□□ -0.63
USP28-201ENST00000003302 THTPAQ9BU02 230 aa11.1□□□□□ -0.63
USP28-201ENST00000003302 ANLNQ9NQW6 1124 aa11.1□□□□□ -0.63
USP28-201ENST00000003302 ZFATQ9P243 1243 aa11.1□□□□□ -0.63
USP28-201ENST00000003302 PPARGC1AQ9UBK2 798 aaKnown RBP11.1□□□□□ -0.63
USP28-201ENST00000003302 STRIP2Q9ULQ0 834 aa11.1□□□□□ -0.63
USP28-201ENST00000003302 SHROOM3Q8TF72 1996 aa11.1□□□□□ -0.63
USP28-201ENST00000003302 MYOCOSA0A1B0GUC4 107 aa11.1□□□□□ -0.63
USP28-201ENST00000003302 ZWINTO95229 277 aa11.1□□□□□ -0.63
USP28-201ENST00000003302 SLC18A2Q05940 514 aa11.1□□□□□ -0.63
USP28-201ENST00000003302 SOWAHAQ2M3V2 549 aa11.1□□□□□ -0.63
USP28-201ENST00000003302 WDR78Q5VTH9 848 aa11.1□□□□□ -0.63
USP28-201ENST00000003302 SLFN12LQ6IEE8 588 aa11.1□□□□□ -0.63
USP28-201ENST00000003302 FAM172AQ8WUF8 416 aa11.1□□□□□ -0.63
USP28-201ENST00000003302 DNAJC9Q8WXX5 260 aa11.1□□□□□ -0.63
USP28-201ENST00000003302 MCRS1Q96EZ8 462 aa11.1□□□□□ -0.63
USP28-201ENST00000003302 TTC1Q99614 292 aa11.1□□□□□ -0.63
USP28-201ENST00000003302 BCO2Q9BYV7 579 aa11.1□□□□□ -0.63
USP28-201ENST00000003302 CDHR5Q9HBB8 845 aa11.1□□□□□ -0.63
USP28-201ENST00000003302 PICK1Q9NRD5 415 aa11.1□□□□□ -0.63
USP28-201ENST00000003302 ZC3H7BQ9UGR2 993 aaKnown RBP11.1□□□□□ -0.63
USP28-201ENST00000003302 PAPSS1O43252 624 aaPredicted RBP11.09□□□□□ -0.63
USP28-201ENST00000003302 LMO2P25791 158 aa11.09□□□□□ -0.63
USP28-201ENST00000003302 ATXN3P54252 364 aaPredicted RBP11.09□□□□□ -0.63
USP28-201ENST00000003302 ROR1Q01973 937 aa11.09□□□□□ -0.63
USP28-201ENST00000003302 GRIK3Q13003 919 aa11.09□□□□□ -0.63
USP28-201ENST00000003302 PAOXQ6QHF9 649 aa11.09□□□□□ -0.63
USP28-201ENST00000003302 NDUFAF2Q8N183 169 aa11.09□□□□□ -0.63
USP28-201ENST00000003302 FLAD1Q8NFF5 587 aa11.09□□□□□ -0.63
USP28-201ENST00000003302 DEPDC1BQ8WUY9 529 aa11.09□□□□□ -0.63
USP28-201ENST00000003302 SIGLEC10Q96LC7 697 aa11.09□□□□□ -0.63
USP28-201ENST00000003302 TRIM55Q9BYV6 548 aa11.09□□□□□ -0.63
USP28-201ENST00000003302 PPP1R12CQ9BZL4 782 aa11.09□□□□□ -0.63
USP28-201ENST00000003302 MTMR10Q9NXD2 777 aa11.09□□□□□ -0.63
USP28-201ENST00000003302 RGS17Q9UGC6 210 aaPredicted RBP11.09□□□□□ -0.63
USP28-201ENST00000003302 MAFGO15525 162 aa11.09□□□□□ -0.63
USP28-201ENST00000003302 INHBAP08476 426 aa11.09□□□□□ -0.63
USP28-201ENST00000003302 SPATA31D3P0C874 917 aa11.09□□□□□ -0.63
USP28-201ENST00000003302 ARF4P18085 180 aaPredicted RBP11.09□□□□□ -0.63
USP28-201ENST00000003302 ATP6V1C1P21283 382 aa11.09□□□□□ -0.63
USP28-201ENST00000003302 TMPRSS15P98073 1019 aa11.09□□□□□ -0.63
USP28-201ENST00000003302 SEPT7Q16181 437 aaKnown RBP11.09□□□□□ -0.63
USP28-201ENST00000003302 SPATA31D4Q6ZUB0 917 aa11.09□□□□□ -0.63
USP28-201ENST00000003302 RAPH1Q70E73 1250 aa11.09□□□□□ -0.63
USP28-201ENST00000003302 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.09□□□□□ -0.63
USP28-201ENST00000003302 RNF157Q96PX1 679 aa11.09□□□□□ -0.63
USP28-201ENST00000003302 APOL6Q9BWW8 343 aa11.09□□□□□ -0.63
USP28-201ENST00000003302 PCDH18Q9HCL0 1135 aa11.09□□□□□ -0.63
USP28-201ENST00000003302 PNPOQ9NVS9 261 aa11.09□□□□□ -0.63
USP28-201ENST00000003302 PLA2G4CQ9UP65 541 aa11.09□□□□□ -0.63
USP28-201ENST00000003302 LOC100653049A0A140TA62 436 aa11.09□□□□□ -0.63
USP28-201ENST00000003302 KRT34O76011 436 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms