RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 OLFM2O95897 454 aa13.43□□□□□ -0.26
SHMT2-227ENST00000557269 CALB1P05937 261 aa13.43□□□□□ -0.26
SHMT2-227ENST00000557269 ABCB4P21439 1286 aa13.43□□□□□ -0.26
SHMT2-227ENST00000557269 GBP2P32456 591 aaPredicted RBP13.43□□□□□ -0.26
SHMT2-227ENST00000557269 GALCP54803 685 aa13.43□□□□□ -0.26
SHMT2-227ENST00000557269 RNASE9P60153 205 aaKnown RBP13.43□□□□□ -0.26
SHMT2-227ENST00000557269 YWHAZP63104 245 aaKnown RBP13.43□□□□□ -0.26
SHMT2-227ENST00000557269 PITX1P78337 314 aaPredicted RBP13.43□□□□□ -0.26
SHMT2-227ENST00000557269 ZXDBP98169 803 aa13.43□□□□□ -0.26
SHMT2-227ENST00000557269 FAM78AQ5JUQ0 283 aa13.43□□□□□ -0.26
SHMT2-227ENST00000557269 HECTD3Q5T447 861 aa13.43□□□□□ -0.26
SHMT2-227ENST00000557269 FAM102AQ5T9C2 384 aaPredicted RBP13.43□□□□□ -0.26
SHMT2-227ENST00000557269 SLC26A9Q7LBE3 791 aa13.43□□□□□ -0.26
SHMT2-227ENST00000557269 ZDHHC17Q8IUH5 632 aa13.43□□□□□ -0.26
SHMT2-227ENST00000557269 JOSD2Q8TAC2 188 aa13.43□□□□□ -0.26
SHMT2-227ENST00000557269 ANP32BQ92688 251 aaKnown RBP13.43□□□□□ -0.26
SHMT2-227ENST00000557269 FAM149B1Q96BN6 582 aa13.43□□□□□ -0.26
SHMT2-227ENST00000557269 ARHGEF26Q96DR7 871 aa13.43□□□□□ -0.26
SHMT2-227ENST00000557269 THAP2Q9H0W7 228 aa13.43□□□□□ -0.26
SHMT2-227ENST00000557269 CLIC5Q9NZA1 410 aa13.43□□□□□ -0.26
SHMT2-227ENST00000557269 TMEM59LQ9UK28 342 aa13.43□□□□□ -0.26
SHMT2-227ENST00000557269 TFR2Q9UP52 801 aa13.43□□□□□ -0.26
SHMT2-227ENST00000557269 REXO2Q9Y3B8 237 aaKnown RBP13.43□□□□□ -0.26
SHMT2-227ENST00000557269 EPN1Q9Y6I3 576 aaPredicted RBP13.43□□□□□ -0.26
SHMT2-227ENST00000557269 C2CD4DB7Z1M9 353 aa13.42□□□□□ -0.26
SHMT2-227ENST00000557269 NDUFA10O95299 355 aa13.42□□□□□ -0.26
SHMT2-227ENST00000557269 LCA5LO95447 670 aa13.42□□□□□ -0.26
SHMT2-227ENST00000557269 PRAMEF12O95522 483 aa13.42□□□□□ -0.26
SHMT2-227ENST00000557269 LAMP2P13473 410 aa13.42□□□□□ -0.26
SHMT2-227ENST00000557269 HDCP19113 662 aa13.42□□□□□ -0.26
SHMT2-227ENST00000557269 TFE3P19532 575 aaPredicted RBP13.42□□□□□ -0.26
SHMT2-227ENST00000557269 PSEN1P49768 467 aa13.42□□□□□ -0.26
SHMT2-227ENST00000557269 TUBP50607 506 aa13.42□□□□□ -0.26
SHMT2-227ENST00000557269 GSCP56915 257 aaPredicted RBP13.42□□□□□ -0.26
SHMT2-227ENST00000557269 SNX16P57768 344 aa13.42□□□□□ -0.26
SHMT2-227ENST00000557269 CCZ1BP86790 482 aa13.42□□□□□ -0.26
SHMT2-227ENST00000557269 CCZ1P86791 482 aaPredicted RBP13.42□□□□□ -0.26
SHMT2-227ENST00000557269 MAMLD1Q13495 774 aa13.42□□□□□ -0.26
SHMT2-227ENST00000557269 PUS10Q3MIT2 529 aaKnown RBP13.42□□□□□ -0.26
SHMT2-227ENST00000557269 ARHGAP15Q53QZ3 475 aa13.42□□□□□ -0.26
SHMT2-227ENST00000557269 EFHC1Q5JVL4 640 aa13.42□□□□□ -0.26
SHMT2-227ENST00000557269 PPP1R15BQ5SWA1 713 aa13.42□□□□□ -0.26
SHMT2-227ENST00000557269 BTBD8Q5XKL5 378 aa13.42□□□□□ -0.26
SHMT2-227ENST00000557269 TOGARAM2Q6ZUX3 1019 aa13.42□□□□□ -0.26
SHMT2-227ENST00000557269 CCDC170Q8IYT3 715 aa13.42□□□□□ -0.26
SHMT2-227ENST00000557269 CMTM8Q8IZV2 173 aa13.42□□□□□ -0.26
SHMT2-227ENST00000557269 DEFB106AQ8N104 65 aa13.42□□□□□ -0.26
SHMT2-227ENST00000557269 ARHGAP18Q8N392 663 aa13.42□□□□□ -0.26
SHMT2-227ENST00000557269 EMC1Q8N766 993 aa13.42□□□□□ -0.26
SHMT2-227ENST00000557269 MSANTD4Q8NCY6 345 aa13.42□□□□□ -0.26
SHMT2-227ENST00000557269 RIN3Q8TB24 985 aa13.42□□□□□ -0.26
SHMT2-227ENST00000557269 ZSCAN18Q8TBC5 510 aaPredicted RBP13.42□□□□□ -0.26
SHMT2-227ENST00000557269 WBP2Q969T9 261 aa13.42□□□□□ -0.26
SHMT2-227ENST00000557269 ZNF653Q96CK0 615 aa13.42□□□□□ -0.26
SHMT2-227ENST00000557269 RSPRY1Q96DX4 576 aa13.42□□□□□ -0.26
SHMT2-227ENST00000557269 VCPIP1Q96JH7 1222 aa13.42□□□□□ -0.26
SHMT2-227ENST00000557269 RPGRIP1Q96KN7 1286 aa13.42□□□□□ -0.26
SHMT2-227ENST00000557269 ZNF830Q96NB3 372 aaPredicted RBP13.42□□□□□ -0.26
SHMT2-227ENST00000557269 LRRC3BQ96PB8 259 aa13.42□□□□□ -0.26
SHMT2-227ENST00000557269 SLC2A13Q96QE2 648 aa13.42□□□□□ -0.26
SHMT2-227ENST00000557269 PHF7Q9BWX1 381 aaPredicted RBP13.42□□□□□ -0.26
SHMT2-227ENST00000557269 ADAM33Q9BZ11 813 aa13.42□□□□□ -0.26
SHMT2-227ENST00000557269 SLITRK6Q9H5Y7 841 aa13.42□□□□□ -0.26
SHMT2-227ENST00000557269 METTL5Q9NRN9 209 aaKnown RBP13.42□□□□□ -0.26
SHMT2-227ENST00000557269 ABCC13Q9NSE7 274 aa13.42□□□□□ -0.26
SHMT2-227ENST00000557269 ASNSD1Q9NWL6 643 aa13.42□□□□□ -0.26
SHMT2-227ENST00000557269 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.42□□□□□ -0.26
SHMT2-227ENST00000557269 MYO1AQ9UBC5 1043 aa13.42□□□□□ -0.26
SHMT2-227ENST00000557269 CNOT8Q9UFF9 292 aaKnown RBP13.42□□□□□ -0.26
SHMT2-227ENST00000557269 STRIP2Q9ULQ0 834 aa13.42□□□□□ -0.26
SHMT2-227ENST00000557269 CCL26Q9Y258 94 aa13.42□□□□□ -0.26
SHMT2-227ENST00000557269 C5orf42Q9H799 3197 aa13.41□□□□□ -0.26
SHMT2-227ENST00000557269 TRAV19A0A0A6YYK7 116 aa13.41□□□□□ -0.26
SHMT2-227ENST00000557269 EIF3CLB5ME19 914 aaKnown RBP13.41□□□□□ -0.26
SHMT2-227ENST00000557269 SART1O43290 800 aaKnown RBP13.41□□□□□ -0.26
SHMT2-227ENST00000557269 HSF2BPO75031 334 aa13.41□□□□□ -0.26
SHMT2-227ENST00000557269 RALAP11233 206 aa13.41□□□□□ -0.26
SHMT2-227ENST00000557269 BMP1P13497 986 aa13.41□□□□□ -0.26
SHMT2-227ENST00000557269 NCAM1P13591 858 aa13.41□□□□□ -0.26
SHMT2-227ENST00000557269 FCARP24071 287 aa13.41□□□□□ -0.26
SHMT2-227ENST00000557269 DDX6P26196 483 aaKnown RBP eCLIP13.41□□□□□ -0.26
SHMT2-227ENST00000557269 RFC1P35251 1148 aaPredicted RBP13.41□□□□□ -0.26
SHMT2-227ENST00000557269 FLT3P36888 993 aa13.41□□□□□ -0.26
SHMT2-227ENST00000557269 SCNN1AP37088 669 aa13.41□□□□□ -0.26
SHMT2-227ENST00000557269 VIPR2P41587 438 aa13.41□□□□□ -0.26
SHMT2-227ENST00000557269 RPL7AP62424 266 aaKnown RBP13.41□□□□□ -0.26
SHMT2-227ENST00000557269 EFEMP1Q12805 493 aa13.41□□□□□ -0.26
SHMT2-227ENST00000557269 DCAF6Q58WW2 860 aa13.41□□□□□ -0.26
SHMT2-227ENST00000557269 C10orf120Q5SQS8 335 aa13.41□□□□□ -0.26
SHMT2-227ENST00000557269 OTUD1Q5VV17 481 aaPredicted RBP13.41□□□□□ -0.26
SHMT2-227ENST00000557269 PLEKHA7Q6IQ23 1121 aa13.41□□□□□ -0.26
SHMT2-227ENST00000557269 ARID3BQ8IVW6 561 aaPredicted RBP13.41□□□□□ -0.26
SHMT2-227ENST00000557269 ZNF276Q8N554 614 aa13.41□□□□□ -0.26
SHMT2-227ENST00000557269 C3orf20Q8ND61 904 aa13.41□□□□□ -0.26
SHMT2-227ENST00000557269 ACRBPQ8NEB7 543 aa13.41□□□□□ -0.26
SHMT2-227ENST00000557269 ADAM32Q8TC27 787 aa13.41□□□□□ -0.26
SHMT2-227ENST00000557269 ADAMTS19Q8TE59 1207 aa13.41□□□□□ -0.26
SHMT2-227ENST00000557269 USP13Q92995 863 aaPredicted RBP13.41□□□□□ -0.26
SHMT2-227ENST00000557269 ZFRQ96KR1 1074 aaKnown RBP13.41□□□□□ -0.26
SHMT2-227ENST00000557269 ASB16Q96NS5 453 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms