RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 CAPSQ13938 189 aa4.48□□□□□ -1.69
CD44-226ENST00000527889 SYCP1Q15431 976 aa4.48□□□□□ -1.69
CD44-226ENST00000527889 ARHGAP44Q17R89 818 aa4.48□□□□□ -1.69
CD44-226ENST00000527889 EDRF1Q3B7T1 1238 aa4.48□□□□□ -1.69
CD44-226ENST00000527889 VWA3BQ502W6 1294 aa4.48□□□□□ -1.69
CD44-226ENST00000527889 ARHGAP29Q52LW3 1261 aa4.48□□□□□ -1.69
CD44-226ENST00000527889 SGO2Q562F6 1265 aa4.48□□□□□ -1.69
CD44-226ENST00000527889 DCAF17Q5H9S7 520 aaPredicted RBP4.48□□□□□ -1.69
CD44-226ENST00000527889 SFRP5Q5T4F7 317 aa4.48□□□□□ -1.69
CD44-226ENST00000527889 IQCEQ6IPM2 695 aa4.48□□□□□ -1.69
CD44-226ENST00000527889 SLC39A4Q6P5W5 647 aa4.48□□□□□ -1.69
CD44-226ENST00000527889 FOXR2Q6PJQ5 311 aa4.48□□□□□ -1.69
CD44-226ENST00000527889 PLPPR4Q7Z2D5 763 aa4.48□□□□□ -1.69
CD44-226ENST00000527889 TLK2Q86UE8 772 aa4.48□□□□□ -1.69
CD44-226ENST00000527889 CMIPQ8IY22 773 aa4.48□□□□□ -1.69
CD44-226ENST00000527889 TTC30BQ8N4P2 665 aa4.48□□□□□ -1.69
CD44-226ENST00000527889 CISD2Q8N5K1 135 aaKnown RBP4.48□□□□□ -1.69
CD44-226ENST00000527889 CCDC89Q8N998 374 aa4.48□□□□□ -1.69
CD44-226ENST00000527889 TC2NQ8N9U0 490 aa4.48□□□□□ -1.69
CD44-226ENST00000527889 CCDC150Q8NCX0 1101 aa4.48□□□□□ -1.69
CD44-226ENST00000527889 PPTC7Q8NI37 304 aa4.48□□□□□ -1.69
CD44-226ENST00000527889 CD99L2Q8TCZ2 262 aa4.48□□□□□ -1.69
CD44-226ENST00000527889 ATP8B4Q8TF62 1192 aa4.48□□□□□ -1.69
CD44-226ENST00000527889 SOCS4Q8WXH5 440 aa4.48□□□□□ -1.69
CD44-226ENST00000527889 PPM1EQ8WY54 764 aa4.48□□□□□ -1.69
CD44-226ENST00000527889 TRIB2Q92519 343 aa4.48□□□□□ -1.69
CD44-226ENST00000527889 FAM46AQ96IP4 442 aaKnown RBP4.48□□□□□ -1.69
CD44-226ENST00000527889 IFT74Q96LB3 600 aa4.48□□□□□ -1.69
CD44-226ENST00000527889 PPP1R16BQ96T49 567 aa4.48□□□□□ -1.69
CD44-226ENST00000527889 CBWD1Q9BRT8 395 aa4.48□□□□□ -1.69
CD44-226ENST00000527889 CRACR2AQ9BSW2 395 aa4.48□□□□□ -1.69
CD44-226ENST00000527889 RNPEPQ9H4A4 650 aa4.48□□□□□ -1.69
CD44-226ENST00000527889 MMRN2Q9H8L6 949 aa4.48□□□□□ -1.69
CD44-226ENST00000527889 AGPAT3Q9NRZ7 376 aa4.48□□□□□ -1.69
CD44-226ENST00000527889 C1GALT1Q9NS00 363 aa4.48□□□□□ -1.69
CD44-226ENST00000527889 GPATCH2Q9NW75 528 aa4.48□□□□□ -1.69
CD44-226ENST00000527889 MKS1Q9NXB0 559 aa4.48□□□□□ -1.69
CD44-226ENST00000527889 IMPACTQ9P2X3 320 aa4.48□□□□□ -1.69
CD44-226ENST00000527889 ARMCX3Q9UH62 379 aaPredicted RBP4.48□□□□□ -1.69
CD44-226ENST00000527889 INTUQ9ULD6 942 aa4.48□□□□□ -1.69
CD44-226ENST00000527889 TBX20Q9UMR3 447 aa4.48□□□□□ -1.69
CD44-226ENST00000527889 TRAF3IP3Q9Y228 551 aa4.48□□□□□ -1.69
CD44-226ENST00000527889 ANAPC1Q9H1A4 1944 aa4.48□□□□□ -1.69
CD44-226ENST00000527889 ITIH6Q6UXX5 1313 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 EPG5Q9HCE0 2579 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 TTC26A0AVF1 554 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 MYADML2A6NDP7 307 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 AKR1B15C9JRZ8 316 aaPredicted RBP4.47□□□□□ -1.69
CD44-226ENST00000527889 FAM47E-STBD1D6RA91 191 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 HNRNPDLO14979 420 aaKnown RBP4.47□□□□□ -1.69
CD44-226ENST00000527889 EPHB6O15197 1021 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 GSTA4O15217 222 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 SLC16A3O15427 465 aaKnown RBP4.47□□□□□ -1.69
CD44-226ENST00000527889 SART1O43290 800 aaKnown RBP4.47□□□□□ -1.69
CD44-226ENST00000527889 GAS2O43903 313 aaKnown RBP4.47□□□□□ -1.69
CD44-226ENST00000527889 EXOC3O60645 756 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 MFAP3LO75121 409 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 H2AFYO75367 372 aaKnown RBP4.47□□□□□ -1.69
CD44-226ENST00000527889 LEFTY1O75610 366 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 ZNF205O95201 554 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 C22orf31O95567 290 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 GNA14O95837 355 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 CBX7O95931 251 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 VTNP04004 478 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 ADRB2P07550 413 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 MYL3P08590 195 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 H2AFB1P0C5Y9 115 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 H2AFB2P0C5Z0 115 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 TRIM49P0CI25 452 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 TRIM49CP0CI26 452 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 SRFP11831 508 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 SKILP12757 684 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 VAV1P15498 845 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 GRK2P25098 689 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 RPL13P26373 211 aaKnown RBP4.47□□□□□ -1.69
CD44-226ENST00000527889 GRK3P35626 688 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 MATR3P43243 847 aaKnown RBP eCLIP4.47□□□□□ -1.69
CD44-226ENST00000527889 KIR3DL1P43629 444 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 GPR3P46089 330 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 RTP1P59025 263 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 APBA1Q02410 837 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 SP3Q02447 781 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 LAMTOR4Q0VGL1 99 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 PPFIA1Q13136 1202 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 KIF22Q14807 665 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 TERF2Q15554 542 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 MAPRE1Q15691 268 aaKnown RBP4.47□□□□□ -1.69
CD44-226ENST00000527889 DGKDQ16760 1214 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 RTP2Q5QGT7 225 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 FKBP15Q5T1M5 1219 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 GPR158Q5T848 1215 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 TCERG1LQ5VWI1 586 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 EEF1DP3Q658K8 133 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 MBLAC2Q68D91 279 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 EFCAB12Q6NXP0 572 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 C22orf34Q6ZV56 151 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 FRMD5Q7Z6J6 570 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 RASSF3Q86WH2 238 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 RHPN2Q8IUC4 686 aa4.47□□□□□ -1.69
CD44-226ENST00000527889 TMEM139Q8IV31 216 aa4.47□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms