RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 CCDC130P13994 396 aa7.93□□□□□ -1.14
COL6A3-208ENST00000468792 PECAM1P16284 738 aaPredicted RBP7.93□□□□□ -1.14
COL6A3-208ENST00000468792 TYMPP19971 482 aa7.93□□□□□ -1.14
COL6A3-208ENST00000468792 L1CAMP32004 1257 aa7.93□□□□□ -1.14
COL6A3-208ENST00000468792 RPL22P35268 128 aaKnown RBP7.93□□□□□ -1.14
COL6A3-208ENST00000468792 THPOP40225 353 aa7.93□□□□□ -1.14
COL6A3-208ENST00000468792 MLH1P40692 756 aa7.93□□□□□ -1.14
COL6A3-208ENST00000468792 HCAR3P49019 387 aa7.93□□□□□ -1.14
COL6A3-208ENST00000468792 HNRNPH2P55795 449 aaKnown RBP7.93□□□□□ -1.14
COL6A3-208ENST00000468792 ARL4CP56559 192 aa7.93□□□□□ -1.14
COL6A3-208ENST00000468792 ROR1Q01973 937 aa7.93□□□□□ -1.14
COL6A3-208ENST00000468792 SCAPQ12770 1279 aa7.93□□□□□ -1.14
COL6A3-208ENST00000468792 TUSC3Q13454 348 aa7.93□□□□□ -1.14
COL6A3-208ENST00000468792 ITGA7Q13683 1181 aa7.93□□□□□ -1.14
COL6A3-208ENST00000468792 KRT81Q14533 505 aa7.93□□□□□ -1.14
COL6A3-208ENST00000468792 LPIN1Q14693 890 aa7.93□□□□□ -1.14
COL6A3-208ENST00000468792 ARHGEF6Q15052 776 aa7.93□□□□□ -1.14
COL6A3-208ENST00000468792 TAF5Q15542 800 aa7.93□□□□□ -1.14
COL6A3-208ENST00000468792 TRIP13Q15645 432 aaPredicted RBP7.93□□□□□ -1.14
COL6A3-208ENST00000468792 MAPRE1Q15691 268 aaKnown RBP7.93□□□□□ -1.14
COL6A3-208ENST00000468792 KYNUQ16719 465 aa7.93□□□□□ -1.14
COL6A3-208ENST00000468792 C15orf59Q2T9L4 293 aaPredicted RBP7.93□□□□□ -1.14
COL6A3-208ENST00000468792 ZNF618Q5T7W0 954 aa7.93□□□□□ -1.14
COL6A3-208ENST00000468792 SH3PXD2AQ5TCZ1 1133 aa7.93□□□□□ -1.14
COL6A3-208ENST00000468792 WSCD1Q658N2 575 aa7.93□□□□□ -1.14
COL6A3-208ENST00000468792 DCLRE1AQ6PJP8 1040 aa7.93□□□□□ -1.14
COL6A3-208ENST00000468792 CLEC20AQ6ZU45 233 aa7.93□□□□□ -1.14
COL6A3-208ENST00000468792 B4GALNT4Q76KP1 1039 aa7.93□□□□□ -1.14
COL6A3-208ENST00000468792 PQLC3Q8N755 202 aa7.93□□□□□ -1.14
COL6A3-208ENST00000468792 GLIS1Q8NBF1 620 aa7.93□□□□□ -1.14
COL6A3-208ENST00000468792 MCUQ8NE86 351 aa7.93□□□□□ -1.14
COL6A3-208ENST00000468792 PCDH19Q8TAB3 1148 aa7.93□□□□□ -1.14
COL6A3-208ENST00000468792 TRAF3IP1Q8TDR0 691 aaPredicted RBP7.93□□□□□ -1.14
COL6A3-208ENST00000468792 CPT1BQ92523 772 aa7.93□□□□□ -1.14
COL6A3-208ENST00000468792 HSPH1Q92598 858 aa7.93□□□□□ -1.14
COL6A3-208ENST00000468792 WNT8BQ93098 351 aa7.93□□□□□ -1.14
COL6A3-208ENST00000468792 NTAN1Q96AB6 310 aa7.93□□□□□ -1.14
COL6A3-208ENST00000468792 MS4A3Q96HJ5 214 aa7.93□□□□□ -1.14
COL6A3-208ENST00000468792 ZFP42Q96MM3 310 aa7.93□□□□□ -1.14
COL6A3-208ENST00000468792 ZIC5Q96T25 663 aa7.93□□□□□ -1.14
COL6A3-208ENST00000468792 NPY6RQ99463 290 aa7.93□□□□□ -1.14
COL6A3-208ENST00000468792 TMEM121Q9BTD3 319 aa7.93□□□□□ -1.14
COL6A3-208ENST00000468792 SNRNP25Q9BV90 132 aaKnown RBP7.93□□□□□ -1.14
COL6A3-208ENST00000468792 CALN1Q9BXU9 219 aa7.93□□□□□ -1.14
COL6A3-208ENST00000468792 FAM107BQ9H098 131 aa7.93□□□□□ -1.14
COL6A3-208ENST00000468792 NRDE2Q9H7Z3 1164 aa7.93□□□□□ -1.14
COL6A3-208ENST00000468792 POPDC2Q9HBU9 364 aa7.93□□□□□ -1.14
COL6A3-208ENST00000468792 NGRNQ9NPE2 291 aaKnown RBP7.93□□□□□ -1.14
COL6A3-208ENST00000468792 RGS18Q9NS28 235 aa7.93□□□□□ -1.14
COL6A3-208ENST00000468792 MTMR10Q9NXD2 777 aa7.93□□□□□ -1.14
COL6A3-208ENST00000468792 RNF186Q9NXI6 227 aa7.93□□□□□ -1.14
COL6A3-208ENST00000468792 DDX43Q9NXZ2 648 aaKnown RBP7.93□□□□□ -1.14
COL6A3-208ENST00000468792 SENP1Q9P0U3 644 aa7.93□□□□□ -1.14
COL6A3-208ENST00000468792 STAP1Q9ULZ2 295 aa7.93□□□□□ -1.14
COL6A3-208ENST00000468792 GMNCA6NCL1 334 aa7.92□□□□□ -1.14
COL6A3-208ENST00000468792 C5orf60A6NFR6 353 aa7.92□□□□□ -1.14
COL6A3-208ENST00000468792 GCATO75600 419 aa7.92□□□□□ -1.14
COL6A3-208ENST00000468792 FAM155BO75949 473 aa7.92□□□□□ -1.14
COL6A3-208ENST00000468792 F9P00740 461 aa7.92□□□□□ -1.14
COL6A3-208ENST00000468792 GSTA2P09210 222 aa7.92□□□□□ -1.14
COL6A3-208ENST00000468792 ADORA2BP29275 332 aa7.92□□□□□ -1.14
COL6A3-208ENST00000468792 TKTP29401 623 aaKnown RBP7.92□□□□□ -1.14
COL6A3-208ENST00000468792 CCND3P30281 292 aaPredicted RBP7.92□□□□□ -1.14
COL6A3-208ENST00000468792 PHBP35232 272 aa7.92□□□□□ -1.14
COL6A3-208ENST00000468792 MAP2K2P36507 400 aa7.92□□□□□ -1.14
COL6A3-208ENST00000468792 CTCFP49711 727 aaPredicted RBP7.92□□□□□ -1.14
COL6A3-208ENST00000468792 CLCNKBP51801 687 aa7.92□□□□□ -1.14
COL6A3-208ENST00000468792 ACLYP53396 1101 aa7.92□□□□□ -1.14
COL6A3-208ENST00000468792 BCAR1P56945 870 aa7.92□□□□□ -1.14
COL6A3-208ENST00000468792 ATP11AP98196 1134 aa7.92□□□□□ -1.14
COL6A3-208ENST00000468792 CDK16Q00536 496 aa7.92□□□□□ -1.14
COL6A3-208ENST00000468792 HIF1AQ16665 826 aa7.92□□□□□ -1.14
COL6A3-208ENST00000468792 DNAJC21Q5F1R6 531 aaKnown RBP7.92□□□□□ -1.14
COL6A3-208ENST00000468792 INTS6LQ5JSJ4 861 aaKnown RBP7.92□□□□□ -1.14
COL6A3-208ENST00000468792 PM20D1Q6GTS8 502 aa7.92□□□□□ -1.14
COL6A3-208ENST00000468792 DSTYKQ6XUX3 929 aa7.92□□□□□ -1.14
COL6A3-208ENST00000468792 CYS1Q717R9 158 aa7.92□□□□□ -1.14
COL6A3-208ENST00000468792 TADA2BQ86TJ2 420 aa7.92□□□□□ -1.14
COL6A3-208ENST00000468792 EXOC3L1Q86VI1 746 aa7.92□□□□□ -1.14
COL6A3-208ENST00000468792 CCDC25Q86WR0 208 aa7.92□□□□□ -1.14
COL6A3-208ENST00000468792 METTL23Q86XA0 190 aa7.92□□□□□ -1.14
COL6A3-208ENST00000468792 CDKL3Q8IVW4 592 aaPredicted RBP7.92□□□□□ -1.14
COL6A3-208ENST00000468792 UNC45BQ8IWX7 931 aa7.92□□□□□ -1.14
COL6A3-208ENST00000468792 PDIK1LQ8N165 341 aa7.92□□□□□ -1.14
COL6A3-208ENST00000468792 BCAS4Q8TDM0 211 aa7.92□□□□□ -1.14
COL6A3-208ENST00000468792 ACSF2Q96CM8 615 aaPredicted RBP7.92□□□□□ -1.14
COL6A3-208ENST00000468792 LRRC39Q96DD0 335 aa7.92□□□□□ -1.14
COL6A3-208ENST00000468792 SMARCD1Q96GM5 515 aa7.92□□□□□ -1.14
COL6A3-208ENST00000468792 SUSD3Q96L08 255 aa7.92□□□□□ -1.14
COL6A3-208ENST00000468792 GLT1D1Q96MS3 346 aa7.92□□□□□ -1.14
COL6A3-208ENST00000468792 PKMYT1Q99640 499 aa7.92□□□□□ -1.14
COL6A3-208ENST00000468792 SYT15Q9BQS2 421 aa7.92□□□□□ -1.14
COL6A3-208ENST00000468792 FTHL17Q9BXU8 183 aa7.92□□□□□ -1.14
COL6A3-208ENST00000468792 B3GNT5Q9BYG0 378 aa7.92□□□□□ -1.14
COL6A3-208ENST00000468792 BRD8Q9H0E9 1235 aa7.92□□□□□ -1.14
COL6A3-208ENST00000468792 CENPHQ9H3R5 247 aa7.92□□□□□ -1.14
COL6A3-208ENST00000468792 GOLGA2P5Q9HBQ8 144 aa7.92□□□□□ -1.14
COL6A3-208ENST00000468792 LRRC4Q9HBW1 653 aa7.92□□□□□ -1.14
COL6A3-208ENST00000468792 SSU72Q9NP77 194 aaKnown RBP7.92□□□□□ -1.14
COL6A3-208ENST00000468792 CRTAC1Q9NQ79 661 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms