RNA–Protein interactions for RNA: YDR049W

VMS1, Transcript of Component of a Cdc48p-complex involved in protein quality control, yeastyeast

Gene VMS1, Length 1,899 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VMS1YDR049W YBR200W-AQ3E755 54 aa3.14□□□□□ -1.91
VMS1YDR049W RPL38P49167 78 aaKnown RBP3.13□□□□□ -1.91
VMS1YDR049W HHY1P39982 102 aa3.13□□□□□ -1.91
VMS1YDR049W CSF1Q12150 2958 aa3.13□□□□□ -1.91
VMS1YDR049W TOR2P32600 2474 aaKnown RBP3.12□□□□□ -1.91
VMS1YDR049W IRA2P19158 3079 aa3.12□□□□□ -1.91
VMS1YDR049W YIL102CP40488 101 aa3.11□□□□□ -1.91
VMS1YDR049W RPC10P40422 70 aa3.11□□□□□ -1.91
VMS1YDR049W YGR025WP53216 100 aa3.09□□□□□ -1.92
VMS1YDR049W YOR011W-AQ3E807 68 aa3.09□□□□□ -1.92
VMS1YDR049W IRA1P18963 3092 aa3.08□□□□□ -1.92
VMS1YDR049W GIS2P53849 153 aaKnown RBP RIP-Chip data3.07□□□□□ -1.92not detected
VMS1YDR049W YBR056W-AI2HB52 66 aa3.06□□□□□ -1.92
VMS1YDR049W PMP3P87284 55 aa3.06□□□□□ -1.92
VMS1YDR049W YBR072C-AQ3E794 53 aa3.06□□□□□ -1.92
VMS1YDR049W YLL006W-AQ3E814 58 aa3.06□□□□□ -1.92
VMS1YDR049W YFR009W-AP0C5M9 85 aa3.02□□□□□ -1.93
VMS1YDR049W YOR394C-AQ8TGJ0 55 aa3.01□□□□□ -1.93
VMS1YDR049W YHR213W-BQ8TGK1 99 aa3□□□□□ -1.93
VMS1YDR049W RPL29P05747 59 aaPredicted RBP2.99□□□□□ -1.93
VMS1YDR049W YPR010C-AA5Z2X5 72 aa2.97□□□□□ -1.93
VMS1YDR049W AUA1P32450 94 aa2.97□□□□□ -1.93
VMS1YDR049W HOR7Q05827 59 aa2.97□□□□□ -1.93
VMS1YDR049W TRA1P38811 3744 aa2.94□□□□□ -1.94
VMS1YDR049W OLI1P61829 76 aa2.94□□□□□ -1.94
VMS1YDR049W YJL127C-BQ3E828 52 aa2.92□□□□□ -1.94
VMS1YDR049W TEL1P38110 2787 aa2.91□□□□□ -1.94
VMS1YDR049W YBR230W-AQ3E762 66 aa2.91□□□□□ -1.94
VMS1YDR049W YJL133C-AQ3E7A3 74 aa2.91□□□□□ -1.94
VMS1YDR049W PRP8P33334 2413 aaKnown RBP2.89□□□□□ -1.95
VMS1YDR049W GCN1P33892 2672 aaKnown RBP2.89□□□□□ -1.95
VMS1YDR049W YLR307C-AQ3E825 87 aa2.86□□□□□ -1.95
VMS1YDR049W TOR1P35169 2470 aa2.86□□□□□ -1.95
VMS1YDR049W URA2P07259 2214 aaKnown RBP2.85□□□□□ -1.95
VMS1YDR049W MEC1P38111 2368 aa2.85□□□□□ -1.95
VMS1YDR049W CUP1-1P0CX80 61 aa2.84□□□□□ -1.95
VMS1YDR049W CUP1-2P0CX81 61 aa2.84□□□□□ -1.95
VMS1YDR049W DDR2P89113 61 aa2.83□□□□□ -1.96
VMS1YDR049W RPL43AP0CX25 92 aaKnown RBP2.8□□□□□ -1.96
VMS1YDR049W RPL43BP0CX26 92 aa2.8□□□□□ -1.96
VMS1YDR049W Q0297Q9ZZV8 51 aa2.79□□□□□ -1.96
VMS1YDR049W YLL066W-BQ8TGJ7 56 aa2.73□□□□□ -1.97
VMS1YDR049W YOL164W-AQ3E7A5 60 aa2.73□□□□□ -1.97
VMS1YDR049W YCR108CQ3E819 63 aa2.71□□□□□ -1.98
VMS1YDR049W YBL044WP38194 122 aa2.69□□□□□ -1.98
VMS1YDR049W NUM1Q00402 2748 aa2.68□□□□□ -1.98
VMS1YDR049W YLR157W-EP0CF00 54 aa2.68□□□□□ -1.98
VMS1YDR049W YBR016WP38216 128 aa2.67□□□□□ -1.98
VMS1YDR049W YGR146C-AQ8TGT9 53 aa2.67□□□□□ -1.98
VMS1YDR049W YHR073W-AP0C5N7 58 aa2.63□□□□□ -1.99
VMS1YDR049W UTP20P35194 2493 aaKnown RBP2.61□□□□□ -1.99
VMS1YDR049W YOR316C-AQ3E806 69 aa2.6□□□□□ -1.99
VMS1YDR049W YDR034C-AP0C289 58 aa2.58□□□□□ -2
VMS1YDR049W RPL37AP49166 88 aaKnown RBP2.58□□□□□ -2
VMS1YDR049W DYN1P36022 4092 aa2.57□□□□□ -2
VMS1YDR049W RPL37BP51402 88 aaKnown RBP2.56□□□□□ -2
VMS1YDR049W YOR072W-BQ3E832 53 aa2.31□□□□□ -2.04
VMS1YDR049W RPS29BP41058 56 aaKnown RBP2.23□□□□□ -2.05
VMS1YDR049W YML054C-AQ3E809 52 aa2.22□□□□□ -2.05
VMS1YDR049W MDN1Q12019 4910 aaKnown RBP2.21□□□□□ -2.06
VMS1YDR049W Q0017Q9ZZX8 53 aa2.18□□□□□ -2.06
VMS1YDR049W RPS29AP41057 56 aaKnown RBP1.92□□□□□ -2.1
VMS1YDR049W YHR050W-AQ05451 56 aa1.84□□□□□ -2.12
Retrieved 63 of 5,963 RNA–protein pairs in 5.7 ms