RNA–Protein interactions for RNA: YAL013W

DEP1, Transcript of Component of the Rpd3L histone deacetylase complex, yeastyeast

Gene DEP1, Length 1,218 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEP1YAL013W YJR128WP47162 119 aa8.08□□□□□ -1.12
DEP1YAL013W HHF1P02309 103 aaKnown RBP8.02□□□□□ -1.13
DEP1YAL013W YHR125WP38831 101 aa8.01□□□□□ -1.13
DEP1YAL013W YLR255CO13574 117 aa7.96□□□□□ -1.14
DEP1YAL013W YGR146C-AQ8TGT9 53 aa7.95□□□□□ -1.14
DEP1YAL013W RPL37BP51402 88 aaKnown RBP7.94□□□□□ -1.14
DEP1YAL013W YJL144WP47009 104 aa7.89□□□□□ -1.15
DEP1YAL013W RPS30AP0CX33 63 aaKnown RBP7.88□□□□□ -1.15
DEP1YAL013W RPS30BP0CX34 63 aaKnown RBP7.88□□□□□ -1.15
DEP1YAL013W YKL065W-AQ2V2P2 73 aa7.86□□□□□ -1.15
DEP1YAL013W COX8P04039 78 aa7.83□□□□□ -1.16
DEP1YAL013W YBR016WP38216 128 aa7.82□□□□□ -1.16
DEP1YAL013W YBL008W-AQ3E821 79 aa7.8□□□□□ -1.16
DEP1YAL013W YFR032C-BQ8TGU2 87 aa7.8□□□□□ -1.16
DEP1YAL013W SDH6Q3E785 79 aa7.79□□□□□ -1.16
DEP1YAL013W YMR001C-AQ8TGS9 76 aa7.66□□□□□ -1.18
DEP1YAL013W YIR021W-AQ3E739 70 aa7.65□□□□□ -1.18
DEP1YAL013W OLI1P61829 76 aa7.64□□□□□ -1.19
DEP1YAL013W OST5Q92316 86 aa7.64□□□□□ -1.19
DEP1YAL013W FYV12Q08559 129 aa7.63□□□□□ -1.19
DEP1YAL013W Q0017Q9ZZX8 53 aa7.63□□□□□ -1.19
DEP1YAL013W YIL156W-BQ2V2P4 73 aa7.61□□□□□ -1.19
DEP1YAL013W YBR201C-AQ2V2Q3 67 aa7.58□□□□□ -1.2
DEP1YAL013W HUB1Q6Q546 73 aa7.55□□□□□ -1.2
DEP1YAL013W MRX7P53869 86 aa7.53□□□□□ -1.2
DEP1YAL013W YJL009WP47078 108 aa7.47□□□□□ -1.21
DEP1YAL013W YGL034CP53186 121 aa7.43□□□□□ -1.22
DEP1YAL013W YMR122CQ03879 124 aa7.41□□□□□ -1.22
DEP1YAL013W YOR381W-AQ3E804 55 aa7.36□□□□□ -1.23
DEP1YAL013W YDR210WQ03482 75 aa7.29□□□□□ -1.24
DEP1YAL013W YER188C-AP0C0V2 99 aa7.23□□□□□ -1.25
DEP1YAL013W YBL044WP38194 122 aa7.22□□□□□ -1.25
DEP1YAL013W SBH1P52870 82 aa7.22□□□□□ -1.25
DEP1YAL013W YML054C-AQ3E809 52 aa7.19□□□□□ -1.26
DEP1YAL013W YCR095W-AQ3E787 52 aa7.16□□□□□ -1.26
DEP1YAL013W YOR394C-AQ8TGJ0 55 aa7.07□□□□□ -1.28
DEP1YAL013W ATP17Q06405 101 aa7.04□□□□□ -1.28
DEP1YAL013W YLR412C-AQ3E742 68 aa6.88□□□□□ -1.31
DEP1YAL013W YCR108CQ3E819 63 aa6.84□□□□□ -1.31
DEP1YAL013W RPL37AP49166 88 aaKnown RBP6.79□□□□□ -1.32
DEP1YAL013W YEL014CP39999 101 aa6.75□□□□□ -1.33
DEP1YAL013W QCR10P37299 77 aa6.59□□□□□ -1.35
DEP1YAL013W YBR121C-AP0C5L4 52 aa6.45□□□□□ -1.38
DEP1YAL013W YOR072W-BQ3E832 53 aa6.43□□□□□ -1.38
DEP1YAL013W RPS28BP0C0X0 67 aaKnown RBP6.42□□□□□ -1.38
DEP1YAL013W RPS28AQ3E7X9 67 aaPredicted RBP6.42□□□□□ -1.38
DEP1YAL013W YGL014C-AP0C5N1 53 aa6.37□□□□□ -1.39
DEP1YAL013W YNL277W-AQ3E7Z0 62 aa6.37□□□□□ -1.39
DEP1YAL013W RPS29BP41058 56 aaKnown RBP6.22□□□□□ -1.41
DEP1YAL013W SOM1Q05676 74 aa6.14□□□□□ -1.43
DEP1YAL013W YML100W-AQ8TGT0 57 aa6.11□□□□□ -1.43
DEP1YAL013W HHY1P39982 102 aa6.09□□□□□ -1.43
DEP1YAL013W RPS29AP41057 56 aaKnown RBP6□□□□□ -1.45
DEP1YAL013W YOR376W-AQ3E805 51 aa6□□□□□ -1.45
DEP1YAL013W YBR072C-AQ3E794 53 aa5.94□□□□□ -1.46
DEP1YAL013W YHR050W-AQ05451 56 aa5.26□□□□□ -1.57
DEP1YAL013W YAL067W-AQ8TGK6 75 aa4.68□□□□□ -1.66
DEP1YAL013W YOL164W-AQ3E7A5 60 aa4.45□□□□□ -1.7
DEP1YAL013W YLR157W-EP0CF00 54 aa4.18□□□□□ -1.74
DEP1YAL013W YER078W-AQ3E7A2 54 aa3.87□□□□□ -1.79
DEP1YAL013W YER175W-AQ8TGU4 54 aa3.57□□□□□ -1.84
DEP1YAL013W YHR032W-AP0C5N6 59 aa3.51□□□□□ -1.85
DEP1YAL013W YHR086W-AQ3E746 53 aa2.44□□□□□ -2.02
Retrieved 63 of 5,963 RNA–protein pairs in 10.8 ms