RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 UNC5DQ6UXZ4 953 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 LHFPL2Q6ZUX7 228 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 USP51Q70EK9 711 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 ZNF365Q70YC5 407 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 TAOK1Q7L7X3 1001 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 DGLUCYQ7Z3D6 616 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 KRT26Q7Z3Y9 468 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 ERICH1Q86X53 443 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 CMIPQ8IY22 773 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 CCDC13Q8IYE1 715 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 SPARTQ8N0X7 666 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 ARHGAP18Q8N392 663 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 AADATQ8N5Z0 425 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 USP38Q8NB14 1042 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 TOR1AIP2Q8NFQ8 470 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 IL17DQ8TAD2 202 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 DQX1Q8TE96 717 aaKnown RBP3.47□□□□□ -1.85
VPS35-208ENST00000568612 COG1Q8WTW3 980 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 RSAD2Q8WXG1 361 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 NCSTNQ92542 709 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 ARHGEF2Q92974 986 aaKnown RBP3.47□□□□□ -1.85
VPS35-208ENST00000568612 AZIN2Q96A70 460 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 CFAP36Q96G28 342 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 CEP95Q96GE4 821 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 CEP295NLQ96MC4 621 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 ZNF570Q96NI8 536 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 NDNQ99608 321 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 PRPF18Q99633 342 aaKnown RBP3.47□□□□□ -1.85
VPS35-208ENST00000568612 CPPED1Q9BRF8 314 aaPredicted RBP3.47□□□□□ -1.85
VPS35-208ENST00000568612 FUCA2Q9BTY2 467 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 NUP58Q9BVL2 599 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 HERC2P3Q9BVR0 1158 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 LDHAL6BQ9BYZ2 381 aaPredicted RBP3.47□□□□□ -1.85
VPS35-208ENST00000568612 B3GNT4Q9C0J1 378 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 TPK1Q9H3S4 243 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 DCTPP1Q9H773 170 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 FAM204AQ9H8W3 233 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 C12orf10Q9HB07 376 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 PDE11AQ9HCR9 933 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 VTA1Q9NP79 307 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 TCP11L1Q9NUJ3 509 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 C14orf119Q9NWQ9 140 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 RHBDL2Q9NX52 303 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 AIPL1Q9NZN9 384 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 HECAQ9UBI9 543 aaPredicted RBP3.47□□□□□ -1.85
VPS35-208ENST00000568612 ATPIF1Q9UII2 106 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 TMPRSS11EQ9UL52 423 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 KIAA1257Q9ULG3 409 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 RIMKLBQ9ULI2 386 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 ZBTB21Q9ULJ3 1066 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 REXO2Q9Y3B8 237 aaKnown RBP3.47□□□□□ -1.85
VPS35-208ENST00000568612 CDY2AQ9Y6F7 541 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 NSD2O96028 1365 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 SMARCA4P51532 1647 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 MSH6P52701 1360 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 PTPN23Q9H3S7 1636 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 GRIN2AQ12879 1464 aa3.47□□□□□ -1.85
VPS35-208ENST00000568612 KDM5CP41229 1560 aa3.46□□□□□ -1.85
VPS35-208ENST00000568612 DNMBPQ6XZF7 1577 aa3.46□□□□□ -1.85
VPS35-208ENST00000568612 MYBBP1AQ9BQG0 1328 aaKnown RBP3.46□□□□□ -1.85
VPS35-208ENST00000568612 CDHR2Q9BYE9 1310 aa3.46□□□□□ -1.85
VPS35-208ENST00000568612 PPRC1Q5VV67 1664 aaKnown RBP3.46□□□□□ -1.85
VPS35-208ENST00000568612 YTHDC2Q9H6S0 1430 aaKnown RBP3.46□□□□□ -1.86
VPS35-208ENST00000568612 GIMAP1-GIMAP5A0A087WTJ2 511 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 IQANK1A0A1B0GTG1 560 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 LOC105371267A0A1B0GV96 52 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 A0A1W2PR48 441 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 TRIM64A6NGJ6 449 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 TRIM64BA6NI03 449 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 SRRM3A6NNA2 597 aaPredicted RBP3.46□□□□□ -1.86
VPS35-208ENST00000568612 A6NNZ2 444 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 RASA4BC9J798 803 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 E9PMD0 336 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 PSMD14O00487 310 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 HAT1O14929 419 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 CASQ2O14958 399 aaPredicted RBP3.46□□□□□ -1.86
VPS35-208ENST00000568612 PLSCR1O15162 318 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 MTSS1O43312 755 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 IDH3BO43837 385 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 ORC4O43929 436 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 DNAJC6O75061 913 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 SUPT3HO75486 399 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 FLOT1O75955 427 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 PRKD3O94806 890 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 YEATS4O95619 227 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 OLFM2O95897 454 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 CFBP00751 764 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 FOSP01100 380 aaPredicted RBP3.46□□□□□ -1.86
VPS35-208ENST00000568612 GSTT2P0CG29 244 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 GSTT2BP0CG30 244 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 SFTPCP11686 197 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 GYPEP15421 78 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 PORP16435 677 aaPredicted RBP3.46□□□□□ -1.86
VPS35-208ENST00000568612 ATF7P17544 494 aaPredicted RBP3.46□□□□□ -1.86
VPS35-208ENST00000568612 CSTF2P33240 577 aaKnown RBP eCLIP3.46□□□□□ -1.86
VPS35-208ENST00000568612 HSPA4P34932 840 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 GDF5P43026 501 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 TUFMP49411 452 aaKnown RBP3.46□□□□□ -1.86
VPS35-208ENST00000568612 SCNN1GP51170 649 aa3.46□□□□□ -1.86
VPS35-208ENST00000568612 COPAP53621 1224 aa3.46□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms