RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 ZNF771Q7L3S4 317 aaPredicted RBP27.5■■□□□ 1.99
CCDC88C-205ENST00000553403 HOOK3Q86VS8 718 aa27.5■■□□□ 1.99
CCDC88C-205ENST00000553403 RNF157Q96PX1 679 aa27.5■■□□□ 1.99
CCDC88C-205ENST00000553403 TMEM109Q9BVC6 243 aa27.5■■□□□ 1.99
CCDC88C-205ENST00000553403 TRPV6Q9H1D0 765 aa27.5■■□□□ 1.99
CCDC88C-205ENST00000553403 RGS18Q9NS28 235 aa27.5■■□□□ 1.99
CCDC88C-205ENST00000553403 DAB1O75553 588 aa27.49■■□□□ 1.99
CCDC88C-205ENST00000553403 CYP11A1P05108 521 aa27.49■■□□□ 1.99
CCDC88C-205ENST00000553403 CHKAP35790 457 aa27.49■■□□□ 1.99
CCDC88C-205ENST00000553403 ADCY1Q08828 1119 aa27.49■■□□□ 1.99
CCDC88C-205ENST00000553403 P3H1Q32P28 736 aa27.49■■□□□ 1.99
CCDC88C-205ENST00000553403 KCTD16Q68DU8 428 aa27.49■■□□□ 1.99
CCDC88C-205ENST00000553403 STRADAQ7RTN6 431 aa27.49■■□□□ 1.99
CCDC88C-205ENST00000553403 PAAF1Q9BRP4 392 aa27.49■■□□□ 1.99
CCDC88C-205ENST00000553403 SNRNP25Q9BV90 132 aaKnown RBP27.49■■□□□ 1.99
CCDC88C-205ENST00000553403 LRRC4Q9HBW1 653 aa27.49■■□□□ 1.99
CCDC88C-205ENST00000553403 STARD7Q9NQZ5 370 aa27.49■■□□□ 1.99
CCDC88C-205ENST00000553403 DSEQ9UL01 958 aa27.49■■□□□ 1.99
CCDC88C-205ENST00000553403 SGK1O00141 431 aa27.49■■□□□ 1.99
CCDC88C-205ENST00000553403 MRPS5P82675 430 aaKnown RBP27.49■■□□□ 1.99
CCDC88C-205ENST00000553403 ADIGQ0VDE8 80 aa27.49■■□□□ 1.99
CCDC88C-205ENST00000553403 SLC29A2Q14542 456 aa27.49■■□□□ 1.99
CCDC88C-205ENST00000553403 CCDC142Q17RM4 750 aa27.49■■□□□ 1.99
CCDC88C-205ENST00000553403 CCDC25Q86WR0 208 aa27.49■■□□□ 1.99
CCDC88C-205ENST00000553403 METTL23Q86XA0 190 aa27.49■■□□□ 1.99
CCDC88C-205ENST00000553403 RELL1Q8IUW5 271 aa27.49■■□□□ 1.99
CCDC88C-205ENST00000553403 TMEM121Q9BTD3 319 aa27.49■■□□□ 1.99
CCDC88C-205ENST00000553403 PCDH18Q9HCL0 1135 aa27.49■■□□□ 1.99
CCDC88C-205ENST00000553403 EOMESO95936 686 aa27.48■■□□□ 1.99
CCDC88C-205ENST00000553403 MATKP42679 507 aa27.48■■□□□ 1.99
CCDC88C-205ENST00000553403 MMRN1Q13201 1228 aa27.48■■□□□ 1.99
CCDC88C-205ENST00000553403 KRT71Q3SY84 523 aa27.48■■□□□ 1.99
CCDC88C-205ENST00000553403 ERMARDQ5T6L9 678 aa27.48■■□□□ 1.99
CCDC88C-205ENST00000553403 KDM7AQ6ZMT4 941 aa27.48■■□□□ 1.99
CCDC88C-205ENST00000553403 FAM35AQ86V20 835 aa27.48■■□□□ 1.99
CCDC88C-205ENST00000553403 SH2D3CQ8N5H7 860 aa27.48■■□□□ 1.99
CCDC88C-205ENST00000553403 GLIS1Q8NBF1 620 aa27.48■■□□□ 1.99
CCDC88C-205ENST00000553403 MYCBPAPQ8TBZ2 947 aa27.48■■□□□ 1.99
CCDC88C-205ENST00000553403 ZNF670Q9BS34 389 aa27.48■■□□□ 1.99
CCDC88C-205ENST00000553403 SEZ6LQ9BYH1 1024 aa27.48■■□□□ 1.99
CCDC88C-205ENST00000553403 ADAM7Q9H2U9 754 aa27.48■■□□□ 1.99
CCDC88C-205ENST00000553403 KRT82Q9NSB4 513 aa27.48■■□□□ 1.99
CCDC88C-205ENST00000553403 TPX2Q9ULW0 747 aaKnown RBP27.48■■□□□ 1.99
CCDC88C-205ENST00000553403 TIMM13Q9Y5L4 95 aaPredicted RBP27.48■■□□□ 1.99
CCDC88C-205ENST00000553403 ARHGEF37A1IGU5 675 aa27.47■■□□□ 1.99
CCDC88C-205ENST00000553403 A6NNZ2 444 aa27.47■■□□□ 1.99
CCDC88C-205ENST00000553403 M0QZQ0 153 aa27.47■■□□□ 1.99
CCDC88C-205ENST00000553403 MCF2LO15068 1137 aa27.47■■□□□ 1.99
CCDC88C-205ENST00000553403 BEST1O76090 585 aa27.47■■□□□ 1.99
CCDC88C-205ENST00000553403 FBXO21O94952 628 aa27.47■■□□□ 1.99
CCDC88C-205ENST00000553403 GRK4P32298 578 aa27.47■■□□□ 1.99
CCDC88C-205ENST00000553403 EIF3EP60228 445 aaKnown RBP27.47■■□□□ 1.99
CCDC88C-205ENST00000553403 MLLT1Q03111 559 aaPredicted RBP27.47■■□□□ 1.99
CCDC88C-205ENST00000553403 NOMO1Q15155 1222 aa27.47■■□□□ 1.99
CCDC88C-205ENST00000553403 TUBB8Q3ZCM7 444 aa27.47■■□□□ 1.99
CCDC88C-205ENST00000553403 CD300LGQ6UXG3 332 aa27.47■■□□□ 1.99
CCDC88C-205ENST00000553403 PRUNE1Q86TP1 453 aa27.47■■□□□ 1.99
CCDC88C-205ENST00000553403 ZCCHC9Q8N567 271 aaKnown RBP27.47■■□□□ 1.99
CCDC88C-205ENST00000553403 CDC42EP4Q9H3Q1 356 aaKnown RBP27.47■■□□□ 1.99
CCDC88C-205ENST00000553403 SAE1Q9UBE0 346 aaPredicted RBP27.47■■□□□ 1.99
CCDC88C-205ENST00000553403 PHF24Q9UPV7 400 aa27.47■■□□□ 1.99
CCDC88C-205ENST00000553403 MYBPHLA2RUH7 354 aa27.46■■□□□ 1.99
CCDC88C-205ENST00000553403 C9IYK1 514 aa27.46■■□□□ 1.99
CCDC88C-205ENST00000553403 ARVCFO00192 962 aa27.46■■□□□ 1.99
CCDC88C-205ENST00000553403 B3GAT3O94766 335 aa27.46■■□□□ 1.99
CCDC88C-205ENST00000553403 SHBGP04278 402 aa27.46■■□□□ 1.99
CCDC88C-205ENST00000553403 ZSCAN5DPP0CG00 497 aa27.46■■□□□ 1.99
CCDC88C-205ENST00000553403 TGM2P21980 687 aa27.46■■□□□ 1.99
CCDC88C-205ENST00000553403 IL4RP24394 825 aa27.46■■□□□ 1.99
CCDC88C-205ENST00000553403 GPS1Q13098 491 aa27.46■■□□□ 1.99
CCDC88C-205ENST00000553403 ZC3H12AQ5D1E8 599 aaKnown RBP27.46■■□□□ 1.99
CCDC88C-205ENST00000553403 DCLRE1AQ6PJP8 1040 aa27.46■■□□□ 1.99
CCDC88C-205ENST00000553403 SIX6OS1Q8N1H7 587 aa27.46■■□□□ 1.99
CCDC88C-205ENST00000553403 TRAF3IP1Q8TDR0 691 aaPredicted RBP27.46■■□□□ 1.99
CCDC88C-205ENST00000553403 FAF2Q96CS3 445 aa27.46■■□□□ 1.99
CCDC88C-205ENST00000553403 PCED1BQ96HM7 432 aa27.46■■□□□ 1.99
CCDC88C-205ENST00000553403 ACBD6Q9BR61 282 aa27.46■■□□□ 1.99
CCDC88C-205ENST00000553403 INPP5FQ9Y2H2 1132 aa27.46■■□□□ 1.99
CCDC88C-205ENST00000553403 SHOX2O60902 331 aaPredicted RBP27.46■■□□□ 1.99
CCDC88C-205ENST00000553403 AP1G2O75843 785 aa27.46■■□□□ 1.99
CCDC88C-205ENST00000553403 ETS1P14921 441 aa27.46■■□□□ 1.99
CCDC88C-205ENST00000553403 PECAM1P16284 738 aaPredicted RBP27.46■■□□□ 1.99
CCDC88C-205ENST00000553403 TFE3P19532 575 aaPredicted RBP27.46■■□□□ 1.99
CCDC88C-205ENST00000553403 MAP3K7CLP57077 242 aa27.46■■□□□ 1.99
CCDC88C-205ENST00000553403 FAM189BP81408 668 aa27.46■■□□□ 1.99
CCDC88C-205ENST00000553403 MORF4L2Q15014 288 aa27.46■■□□□ 1.99
CCDC88C-205ENST00000553403 DPYSL2Q16555 572 aa27.46■■□□□ 1.99
CCDC88C-205ENST00000553403 SLC25A52Q3SY17 297 aa27.46■■□□□ 1.99
CCDC88C-205ENST00000553403 SLC24A5Q71RS6 500 aa27.46■■□□□ 1.99
CCDC88C-205ENST00000553403 PCGF5Q86SE9 256 aa27.46■■□□□ 1.99
CCDC88C-205ENST00000553403 RSAD2Q8WXG1 361 aa27.46■■□□□ 1.99
CCDC88C-205ENST00000553403 CENPHQ9H3R5 247 aa27.46■■□□□ 1.99
CCDC88C-205ENST00000553403 GPATCH2LQ9NWQ4 482 aa27.46■■□□□ 1.99
CCDC88C-205ENST00000553403 TDRD15B5MCY1 1934 aaKnown RBP27.45■■□□□ 1.99
CCDC88C-205ENST00000553403 NR1D1P20393 614 aa27.45■■□□□ 1.98
CCDC88C-205ENST00000553403 NOS2P35228 1153 aa27.45■■□□□ 1.98
CCDC88C-205ENST00000553403 YWHAZP63104 245 aaKnown RBP27.45■■□□□ 1.98
CCDC88C-205ENST00000553403 ANKRD20A8PQ5CZ79 823 aa27.45■■□□□ 1.98
CCDC88C-205ENST00000553403 SLC9A4Q6AI14 798 aa27.45■■□□□ 1.98
CCDC88C-205ENST00000553403 RTN4RL1Q86UN2 441 aaPredicted RBP27.45■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms