RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 LINC01465Q8N7H1 131 aa3.55□□□□□ -1.84
NUP54-208ENST00000508604 RAPGEF4Q8WZA2 1011 aa3.55□□□□□ -1.84
NUP54-208ENST00000508604 SLC25A28Q96A46 364 aa3.55□□□□□ -1.84
NUP54-208ENST00000508604 HIC2Q96JB3 615 aa3.55□□□□□ -1.84
NUP54-208ENST00000508604 MAP3K14Q99558 947 aa3.55□□□□□ -1.84
NUP54-208ENST00000508604 SEMA4BQ9NPR2 832 aaPredicted RBP3.55□□□□□ -1.84
NUP54-208ENST00000508604 SELENONQ9NZV5 590 aa3.55□□□□□ -1.84
NUP54-208ENST00000508604 NOTCH4Q99466 2003 aa3.54□□□□□ -1.84
NUP54-208ENST00000508604 A0A087WWL8 130 aa3.54□□□□□ -1.84
NUP54-208ENST00000508604 CLIC1O00299 241 aa3.54□□□□□ -1.84
NUP54-208ENST00000508604 RGS10O43665 173 aa3.54□□□□□ -1.84
NUP54-208ENST00000508604 AKAP5P24588 427 aa3.54□□□□□ -1.84
NUP54-208ENST00000508604 YPEL5P62699 121 aa3.54□□□□□ -1.84
NUP54-208ENST00000508604 FGL2Q14314 439 aa3.54□□□□□ -1.84
NUP54-208ENST00000508604 MFSD13AQ14CX5 517 aa3.54□□□□□ -1.84
NUP54-208ENST00000508604 SEC23BQ15437 767 aa3.54□□□□□ -1.84
NUP54-208ENST00000508604 ASIC2Q16515 512 aa3.54□□□□□ -1.84
NUP54-208ENST00000508604 PRTGQ2VWP7 1150 aa3.54□□□□□ -1.84
NUP54-208ENST00000508604 RNF187Q5TA31 235 aaPredicted RBP3.54□□□□□ -1.84
NUP54-208ENST00000508604 OR6B3Q8NGW1 331 aa3.54□□□□□ -1.84
NUP54-208ENST00000508604 HSPBAP1Q96EW2 488 aa3.54□□□□□ -1.84
NUP54-208ENST00000508604 MEIS3Q99687 375 aa3.54□□□□□ -1.84
NUP54-208ENST00000508604 SMAD5Q99717 465 aaKnown RBP3.54□□□□□ -1.84
NUP54-208ENST00000508604 VN1R3Q9BXE9 311 aa3.54□□□□□ -1.84
NUP54-208ENST00000508604 DECR2Q9NUI1 292 aa3.54□□□□□ -1.84
NUP54-208ENST00000508604 MDFICQ9P1T7 246 aa3.54□□□□□ -1.84
NUP54-208ENST00000508604 INPPL1O15357 1258 aa3.53□□□□□ -1.84
NUP54-208ENST00000508604 SLC28A2O43868 658 aa3.53□□□□□ -1.84
NUP54-208ENST00000508604 ZC3H11AO75152 810 aaKnown RBP eCLIP3.53□□□□□ -1.84
NUP54-208ENST00000508604 ALDH7A1P49419 539 aaKnown RBP3.53□□□□□ -1.84
NUP54-208ENST00000508604 B4GALNT1Q00973 533 aa3.53□□□□□ -1.84
NUP54-208ENST00000508604 RAB32Q13637 225 aa3.53□□□□□ -1.84
NUP54-208ENST00000508604 INSCQ1MX18 579 aa3.53□□□□□ -1.84
NUP54-208ENST00000508604 PTCHD3Q3KNS1 767 aa3.53□□□□□ -1.84
NUP54-208ENST00000508604 PELI3Q8N2H9 469 aa3.53□□□□□ -1.84
NUP54-208ENST00000508604 CELF5Q8N6W0 485 aaKnown RBP3.53□□□□□ -1.84
NUP54-208ENST00000508604 P2RX7Q99572 595 aaKnown RBP3.53□□□□□ -1.84
NUP54-208ENST00000508604 GTPBP4Q9BZE4 634 aaKnown RBP3.53□□□□□ -1.84
NUP54-208ENST00000508604 TRIM36Q9NQ86 728 aa3.53□□□□□ -1.84
NUP54-208ENST00000508604 ZBTB40Q9NUA8 1239 aa3.53□□□□□ -1.84
NUP54-208ENST00000508604 FER1L4A9Z1Z3 1794 aa3.53□□□□□ -1.84
NUP54-208ENST00000508604 LOC105378220A0A1B0GUY1 285 aaPredicted RBP3.52□□□□□ -1.85
NUP54-208ENST00000508604 TBC1D4O60343 1298 aa3.52□□□□□ -1.85
NUP54-208ENST00000508604 NGFRP08138 427 aa3.52□□□□□ -1.85
NUP54-208ENST00000508604 CD19P15391 556 aa3.52□□□□□ -1.85
NUP54-208ENST00000508604 PGGT1BP53609 377 aa3.52□□□□□ -1.85
NUP54-208ENST00000508604 TIRAPP58753 221 aa3.52□□□□□ -1.85
NUP54-208ENST00000508604 TMEM240Q5SV17 173 aa3.52□□□□□ -1.85
NUP54-208ENST00000508604 C12orf76Q8N812 135 aaPredicted RBP3.52□□□□□ -1.85
NUP54-208ENST00000508604 DNAJB14Q8TBM8 379 aa3.52□□□□□ -1.85
NUP54-208ENST00000508604 CGRRF1Q99675 332 aa3.52□□□□□ -1.85
NUP54-208ENST00000508604 TMEM8AQ9HCN3 771 aa3.52□□□□□ -1.85
NUP54-208ENST00000508604 ARL8BQ9NVJ2 186 aa3.52□□□□□ -1.85
NUP54-208ENST00000508604 TMEM45AQ9NWC5 275 aa3.52□□□□□ -1.85
NUP54-208ENST00000508604 PAXBP1Q9Y5B6 917 aa3.52□□□□□ -1.85
NUP54-208ENST00000508604 BTN3A1O00481 513 aa3.52□□□□□ -1.85
NUP54-208ENST00000508604 MARCH6O60337 910 aa3.52□□□□□ -1.85
NUP54-208ENST00000508604 SRGAP2O75044 1071 aa3.52□□□□□ -1.85
NUP54-208ENST00000508604 RASAL1O95294 804 aa3.52□□□□□ -1.85
NUP54-208ENST00000508604 SLC14A1Q13336 389 aa3.52□□□□□ -1.85
NUP54-208ENST00000508604 CTBP1Q13363 440 aa3.52□□□□□ -1.85
NUP54-208ENST00000508604 CACHD1Q5VU97 1274 aa3.52□□□□□ -1.85
NUP54-208ENST00000508604 SKAP1Q86WV1 359 aa3.52□□□□□ -1.85
NUP54-208ENST00000508604 B4GALNT2Q8NHY0 566 aa3.52□□□□□ -1.85
NUP54-208ENST00000508604 KBTBD7Q8WVZ9 684 aa3.52□□□□□ -1.85
NUP54-208ENST00000508604 JPH3Q8WXH2 748 aaPredicted RBP3.52□□□□□ -1.85
NUP54-208ENST00000508604 CTHRC1Q96CG8 243 aa3.52□□□□□ -1.85
NUP54-208ENST00000508604 C1GALT1C1Q96EU7 318 aa3.52□□□□□ -1.85
NUP54-208ENST00000508604 MRGPRX1Q96LB2 322 aa3.52□□□□□ -1.85
NUP54-208ENST00000508604 PPP1R10Q96QC0 940 aaKnown RBP3.52□□□□□ -1.85
NUP54-208ENST00000508604 PPP1R9BQ96SB3 815 aa3.52□□□□□ -1.85
NUP54-208ENST00000508604 NTPCRQ9BSD7 190 aaKnown RBP3.52□□□□□ -1.85
NUP54-208ENST00000508604 NKX1-2Q9UD57 310 aaPredicted RBP3.52□□□□□ -1.85
NUP54-208ENST00000508604 A0A1W2PPL8 197 aa3.51□□□□□ -1.85
NUP54-208ENST00000508604 CTIFO43310 598 aaKnown RBP3.51□□□□□ -1.85
NUP54-208ENST00000508604 SPRY2O43597 315 aa3.51□□□□□ -1.85
NUP54-208ENST00000508604 AP1G1O43747 822 aa3.51□□□□□ -1.85
NUP54-208ENST00000508604 ATF7P17544 494 aaPredicted RBP3.51□□□□□ -1.85
NUP54-208ENST00000508604 TBXAS1P24557 533 aaPredicted RBP3.51□□□□□ -1.85
NUP54-208ENST00000508604 UQCRC1P31930 480 aa3.51□□□□□ -1.85
NUP54-208ENST00000508604 CDKN1CP49918 316 aaPredicted RBP3.51□□□□□ -1.85
NUP54-208ENST00000508604 SLC13A2Q13183 592 aa3.51□□□□□ -1.85
NUP54-208ENST00000508604 EGFLAMQ63HQ2 1017 aa3.51□□□□□ -1.85
NUP54-208ENST00000508604 CAPRIN2Q6IMN6 1127 aaKnown RBP3.51□□□□□ -1.85
NUP54-208ENST00000508604 FAM57BQ71RH2 274 aa3.51□□□□□ -1.85
NUP54-208ENST00000508604 GRAMD1CQ8IYS0 662 aa3.51□□□□□ -1.85
NUP54-208ENST00000508604 BCAS4Q8TDM0 211 aa3.51□□□□□ -1.85
NUP54-208ENST00000508604 ZNF479Q96JC4 524 aa3.51□□□□□ -1.85
NUP54-208ENST00000508604 VPS50Q96JG6 964 aa3.51□□□□□ -1.85
NUP54-208ENST00000508604 CAMK1GQ96NX5 476 aa3.51□□□□□ -1.85
NUP54-208ENST00000508604 SCNM1Q9BWG6 230 aa3.51□□□□□ -1.85
NUP54-208ENST00000508604 TRIM5Q9C035 493 aa3.51□□□□□ -1.85
NUP54-208ENST00000508604 USP29Q9HBJ7 922 aa3.51□□□□□ -1.85
NUP54-208ENST00000508604 STAP2Q9UGK3 403 aa3.51□□□□□ -1.85
NUP54-208ENST00000508604 CDY1Q9Y6F8 540 aa3.51□□□□□ -1.85
NUP54-208ENST00000508604 EXOC5O00471 708 aa3.5□□□□□ -1.85
NUP54-208ENST00000508604 ACOT8O14734 319 aa3.5□□□□□ -1.85
NUP54-208ENST00000508604 ALDH2P05091 517 aa3.5□□□□□ -1.85
NUP54-208ENST00000508604 SLC12A2P55011 1212 aa3.5□□□□□ -1.85
NUP54-208ENST00000508604 RAB1AP62820 205 aa3.5□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 69 ms