RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 ATICP31939 592 aa4.74□□□□□ -1.65
USP40-209ENST00000452724 GATMP50440 423 aa4.74□□□□□ -1.65
USP40-209ENST00000452724 TPTEP56180 551 aa4.74□□□□□ -1.65
USP40-209ENST00000452724 USP17L6PQ6QN14 398 aa4.74□□□□□ -1.65
USP40-209ENST00000452724 CRTC1Q6UUV9 634 aa4.74□□□□□ -1.65
USP40-209ENST00000452724 SMG7Q92540 1137 aaKnown RBP4.74□□□□□ -1.65
USP40-209ENST00000452724 SNX27Q96L92 541 aa4.74□□□□□ -1.65
USP40-209ENST00000452724 FAM227BQ96M60 508 aa4.74□□□□□ -1.65
USP40-209ENST00000452724 GDF15Q99988 308 aa4.74□□□□□ -1.65
USP40-209ENST00000452724 VN1R3Q9BXE9 311 aa4.74□□□□□ -1.65
USP40-209ENST00000452724 ZCWPW1Q9H0M4 648 aa4.74□□□□□ -1.65
USP40-209ENST00000452724 SLC25A32Q9H2D1 315 aa4.74□□□□□ -1.65
USP40-209ENST00000452724 ZBTB26Q9HCK0 441 aa4.74□□□□□ -1.65
USP40-209ENST00000452724 CCNL1Q9UK58 526 aaPredicted RBP4.74□□□□□ -1.65
USP40-209ENST00000452724 ST3GAL5Q9UNP4 418 aa4.74□□□□□ -1.65
USP40-209ENST00000452724 DAAM1Q9Y4D1 1078 aa4.74□□□□□ -1.65
USP40-209ENST00000452724 FAM234BA2RU67 622 aa4.73□□□□□ -1.65
USP40-209ENST00000452724 AGPSO00116 658 aa4.73□□□□□ -1.65
USP40-209ENST00000452724 PSMD9O00233 223 aa4.73□□□□□ -1.65
USP40-209ENST00000452724 SNX2O60749 519 aa4.73□□□□□ -1.65
USP40-209ENST00000452724 PEX14O75381 377 aa4.73□□□□□ -1.65
USP40-209ENST00000452724 NDST3O95803 873 aa4.73□□□□□ -1.65
USP40-209ENST00000452724 PRKCBP05771 671 aa4.73□□□□□ -1.65
USP40-209ENST00000452724 GABRB3P28472 473 aa4.73□□□□□ -1.65
USP40-209ENST00000452724 NTSR1P30989 418 aa4.73□□□□□ -1.65
USP40-209ENST00000452724 CYP2C18P33260 490 aa4.73□□□□□ -1.65
USP40-209ENST00000452724 PPM1AP35813 382 aa4.73□□□□□ -1.65
USP40-209ENST00000452724 CCT8P50990 548 aa4.73□□□□□ -1.65
USP40-209ENST00000452724 TIRAPP58753 221 aa4.73□□□□□ -1.65
USP40-209ENST00000452724 OS9Q13438 667 aaPredicted RBP4.73□□□□□ -1.65
USP40-209ENST00000452724 BIRC2Q13490 618 aa4.73□□□□□ -1.65
USP40-209ENST00000452724 MORC3Q14149 939 aa4.73□□□□□ -1.65
USP40-209ENST00000452724 FAXCQ5TGI0 409 aa4.73□□□□□ -1.65
USP40-209ENST00000452724 FCRLBQ6BAA4 426 aa4.73□□□□□ -1.65
USP40-209ENST00000452724 SUMO4Q6EEV6 95 aa4.73□□□□□ -1.65
USP40-209ENST00000452724 FBXO38Q6PIJ6 1188 aa4.73□□□□□ -1.65
USP40-209ENST00000452724 DPY19L3Q6ZPD9 716 aa4.73□□□□□ -1.65
USP40-209ENST00000452724 WDR53Q7Z5U6 358 aaPredicted RBP4.73□□□□□ -1.65
USP40-209ENST00000452724 SKAP1Q86WV1 359 aa4.73□□□□□ -1.65
USP40-209ENST00000452724 RAB11FIP4Q86YS3 637 aa4.73□□□□□ -1.65
USP40-209ENST00000452724 SPICE1Q8N0Z3 855 aa4.73□□□□□ -1.65
USP40-209ENST00000452724 RP9Q8TA86 221 aaKnown RBP4.73□□□□□ -1.65
USP40-209ENST00000452724 RSPRY1Q96DX4 576 aa4.73□□□□□ -1.65
USP40-209ENST00000452724 ZDHHC12Q96GR4 267 aa4.73□□□□□ -1.65
USP40-209ENST00000452724 HIST1H2AAQ96QV6 131 aa4.73□□□□□ -1.65
USP40-209ENST00000452724 RPS6KC1Q96S38 1066 aa4.73□□□□□ -1.65
USP40-209ENST00000452724 DPCDQ9BVM2 203 aaPredicted RBP4.73□□□□□ -1.65
USP40-209ENST00000452724 SLC29A3Q9BZD2 475 aa4.73□□□□□ -1.65
USP40-209ENST00000452724 DLL3Q9NYJ7 618 aa4.73□□□□□ -1.65
USP40-209ENST00000452724 RGL1Q9NZL6 768 aa4.73□□□□□ -1.65
USP40-209ENST00000452724 TAGLN3Q9UI15 199 aa4.73□□□□□ -1.65
USP40-209ENST00000452724 VPS51Q9UID3 782 aa4.73□□□□□ -1.65
USP40-209ENST00000452724 CDC23Q9UJX2 597 aa4.73□□□□□ -1.65
USP40-209ENST00000452724 RIMKLBQ9ULI2 386 aa4.73□□□□□ -1.65
USP40-209ENST00000452724 GABRQQ9UN88 632 aa4.73□□□□□ -1.65
USP40-209ENST00000452724 ABHD14A-ACY1A0A1B0GW23 586 aa4.72□□□□□ -1.65
USP40-209ENST00000452724 QSOX1O00391 747 aa4.72□□□□□ -1.65
USP40-209ENST00000452724 PODXLO00592 558 aa4.72□□□□□ -1.65
USP40-209ENST00000452724 HNRNPDLO14979 420 aaKnown RBP4.72□□□□□ -1.65
USP40-209ENST00000452724 PLA2G6O60733 806 aa4.72□□□□□ -1.65
USP40-209ENST00000452724 COQ9O75208 318 aa4.72□□□□□ -1.65
USP40-209ENST00000452724 PRKCGP05129 697 aa4.72□□□□□ -1.65
USP40-209ENST00000452724 DLDP09622 509 aaKnown RBP4.72□□□□□ -1.65
USP40-209ENST00000452724 ENGP17813 658 aa4.72□□□□□ -1.65
USP40-209ENST00000452724 EPHA10Q5JZY3 1008 aa4.72□□□□□ -1.65
USP40-209ENST00000452724 MRNIPQ6NTE8 343 aa4.72□□□□□ -1.65
USP40-209ENST00000452724 ANKRD16Q6P6B7 361 aa4.72□□□□□ -1.65
USP40-209ENST00000452724 KIAA0408Q6ZU52 694 aa4.72□□□□□ -1.65
USP40-209ENST00000452724 Q6ZWC4 215 aa4.72□□□□□ -1.65
USP40-209ENST00000452724 PARS2Q7L3T8 475 aaKnown RBP4.72□□□□□ -1.65
USP40-209ENST00000452724 AMIGO2Q86SJ2 522 aa4.72□□□□□ -1.65
USP40-209ENST00000452724 CCDC28AQ8IWP9 274 aa4.72□□□□□ -1.65
USP40-209ENST00000452724 SYTL1Q8IYJ3 562 aa4.72□□□□□ -1.65
USP40-209ENST00000452724 GLIS1Q8NBF1 620 aa4.72□□□□□ -1.65
USP40-209ENST00000452724 CYP2W1Q8TAV3 490 aa4.72□□□□□ -1.65
USP40-209ENST00000452724 SELENOOQ9BVL4 669 aa4.72□□□□□ -1.65
USP40-209ENST00000452724 STK33Q9BYT3 514 aa4.72□□□□□ -1.65
USP40-209ENST00000452724 DDX24Q9GZR7 859 aaKnown RBP eCLIP4.72□□□□□ -1.65
USP40-209ENST00000452724 PCDHAC1Q9H158 963 aa4.72□□□□□ -1.65
USP40-209ENST00000452724 PLCB1Q9NQ66 1216 aa4.72□□□□□ -1.65
USP40-209ENST00000452724 TRIM36Q9NQ86 728 aa4.72□□□□□ -1.65
USP40-209ENST00000452724 DUSP22Q9NRW4 184 aa4.72□□□□□ -1.65
USP40-209ENST00000452724 FER1L4A9Z1Z3 1794 aa4.72□□□□□ -1.65
USP40-209ENST00000452724 DNAJC9-AS1A6NH13 148 aa4.71□□□□□ -1.66
USP40-209ENST00000452724 MANSC4A6NHS7 340 aaPredicted RBP4.71□□□□□ -1.66
USP40-209ENST00000452724 H0YIZ8 118 aa4.71□□□□□ -1.66
USP40-209ENST00000452724 EXOC5O00471 708 aa4.71□□□□□ -1.66
USP40-209ENST00000452724 ADAMTS3O15072 1205 aa4.71□□□□□ -1.66
USP40-209ENST00000452724 TJP3O95049 919 aa4.71□□□□□ -1.66
USP40-209ENST00000452724 FAM163BP0C2L3 166 aa4.71□□□□□ -1.66
USP40-209ENST00000452724 EGR1P18146 543 aa4.71□□□□□ -1.66
USP40-209ENST00000452724 DRD4P21917 467 aa4.71□□□□□ -1.66
USP40-209ENST00000452724 MST1P26927 711 aa4.71□□□□□ -1.66
USP40-209ENST00000452724 RBL1P28749 1068 aa4.71□□□□□ -1.66
USP40-209ENST00000452724 CTGFP29279 349 aa4.71□□□□□ -1.66
USP40-209ENST00000452724 TECP42680 631 aa4.71□□□□□ -1.66
USP40-209ENST00000452724 EEFSECP57772 596 aaKnown RBP4.71□□□□□ -1.66
USP40-209ENST00000452724 PROK1P58294 105 aa4.71□□□□□ -1.66
USP40-209ENST00000452724 E2F1Q01094 437 aa4.71□□□□□ -1.66
USP40-209ENST00000452724 SLC10A2Q12908 348 aaPredicted RBP4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms