RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 H2AFVQ71UI9 128 aa7.57□□□□□ -1.2
SCN9A-202ENST00000409435 SGMS1Q86VZ5 419 aa7.57□□□□□ -1.2
SCN9A-202ENST00000409435 SKAP1Q86WV1 359 aa7.57□□□□□ -1.2
SCN9A-202ENST00000409435 DENND6AQ8IWF6 608 aa7.57□□□□□ -1.2
SCN9A-202ENST00000409435 MCUQ8NE86 351 aa7.57□□□□□ -1.2
SCN9A-202ENST00000409435 PIGKQ92643 395 aa7.57□□□□□ -1.2
SCN9A-202ENST00000409435 PPP1R14BQ96C90 147 aa7.57□□□□□ -1.2
SCN9A-202ENST00000409435 C12orf42Q96LP6 360 aa7.57□□□□□ -1.2
SCN9A-202ENST00000409435 MTMR9Q96QG7 549 aa7.57□□□□□ -1.2
SCN9A-202ENST00000409435 RTP3Q9BQQ7 232 aa7.57□□□□□ -1.2
SCN9A-202ENST00000409435 WDCPQ9H6R7 721 aa7.57□□□□□ -1.2
SCN9A-202ENST00000409435 TMA7Q9Y2S6 64 aaKnown RBP7.57□□□□□ -1.2
SCN9A-202ENST00000409435 PKP3Q9Y446 797 aa7.57□□□□□ -1.2
SCN9A-202ENST00000409435 CFAP69A5D8W1 941 aa7.57□□□□□ -1.2
SCN9A-202ENST00000409435 FGFR1P11362 822 aa7.57□□□□□ -1.2
SCN9A-202ENST00000409435 CMA1P23946 247 aa7.57□□□□□ -1.2
SCN9A-202ENST00000409435 EEF1GP26641 437 aaKnown RBP7.57□□□□□ -1.2
SCN9A-202ENST00000409435 DPP6P42658 865 aa7.57□□□□□ -1.2
SCN9A-202ENST00000409435 EPHB4P54760 987 aa7.57□□□□□ -1.2
SCN9A-202ENST00000409435 MARSP56192 900 aaKnown RBP7.57□□□□□ -1.2
SCN9A-202ENST00000409435 GRIN1Q05586 938 aa7.57□□□□□ -1.2
SCN9A-202ENST00000409435 SIX5Q8N196 739 aa7.57□□□□□ -1.2
SCN9A-202ENST00000409435 ARL10Q8N8L6 244 aa7.57□□□□□ -1.2
SCN9A-202ENST00000409435 TEKT4Q8WW24 435 aa7.57□□□□□ -1.2
SCN9A-202ENST00000409435 GSDMAQ96QA5 445 aa7.57□□□□□ -1.2
SCN9A-202ENST00000409435 ADAM28Q9UKQ2 775 aa7.57□□□□□ -1.2
SCN9A-202ENST00000409435 TBX20Q9UMR3 447 aa7.57□□□□□ -1.2
SCN9A-202ENST00000409435 TRAF3IP3Q9Y228 551 aa7.57□□□□□ -1.2
SCN9A-202ENST00000409435 CLIC4Q9Y696 253 aa7.57□□□□□ -1.2
SCN9A-202ENST00000409435 NALCNQ8IZF0 1738 aa7.57□□□□□ -1.2
SCN9A-202ENST00000409435 KIF20BQ96Q89 1820 aa7.57□□□□□ -1.2
SCN9A-202ENST00000409435 NDUFB5O43674 189 aa7.57□□□□□ -1.2
SCN9A-202ENST00000409435 HIST1H2AGP0C0S8 130 aaPredicted RBP7.57□□□□□ -1.2
SCN9A-202ENST00000409435 HIST1H2ADP20671 130 aa7.57□□□□□ -1.2
SCN9A-202ENST00000409435 KPNA2P52292 529 aaKnown RBP7.57□□□□□ -1.2
SCN9A-202ENST00000409435 PRAMEP78395 509 aa7.57□□□□□ -1.2
SCN9A-202ENST00000409435 GRIK5Q16478 980 aa7.57□□□□□ -1.2
SCN9A-202ENST00000409435 SNRNP35Q16560 246 aaKnown RBP7.57□□□□□ -1.2
SCN9A-202ENST00000409435 ZNF658Q5TYW1 1059 aaPredicted RBP7.57□□□□□ -1.2
SCN9A-202ENST00000409435 MOXD1Q6UVY6 613 aa7.57□□□□□ -1.2
SCN9A-202ENST00000409435 DDHD1Q8NEL9 900 aa7.57□□□□□ -1.2
SCN9A-202ENST00000409435 VPS39Q96JC1 886 aa7.57□□□□□ -1.2
SCN9A-202ENST00000409435 HIST1H2AHQ96KK5 128 aa7.57□□□□□ -1.2
SCN9A-202ENST00000409435 HIST1H2AJQ99878 128 aa7.57□□□□□ -1.2
SCN9A-202ENST00000409435 H2AFJQ9BTM1 129 aa7.57□□□□□ -1.2
SCN9A-202ENST00000409435 STRADBQ9C0K7 418 aa7.57□□□□□ -1.2
SCN9A-202ENST00000409435 INTUQ9ULD6 942 aa7.57□□□□□ -1.2
SCN9A-202ENST00000409435 PCDHA2Q9Y5H9 948 aa7.57□□□□□ -1.2
SCN9A-202ENST00000409435 PLA2G6O60733 806 aa7.56□□□□□ -1.2
SCN9A-202ENST00000409435 SNX2O60749 519 aa7.56□□□□□ -1.2
SCN9A-202ENST00000409435 ENDOD1O94919 500 aa7.56□□□□□ -1.2
SCN9A-202ENST00000409435 IGSF6O95976 241 aa7.56□□□□□ -1.2
SCN9A-202ENST00000409435 CASP2P42575 452 aa7.56□□□□□ -1.2
SCN9A-202ENST00000409435 WASP42768 502 aa7.56□□□□□ -1.2
SCN9A-202ENST00000409435 GAD2Q05329 585 aa7.56□□□□□ -1.2
SCN9A-202ENST00000409435 ART3Q13508 389 aa7.56□□□□□ -1.2
SCN9A-202ENST00000409435 TFDP2Q14188 446 aa7.56□□□□□ -1.2
SCN9A-202ENST00000409435 DENND5BQ6ZUT9 1274 aa7.56□□□□□ -1.2
SCN9A-202ENST00000409435 PLEKHM3Q6ZWE6 761 aa7.56□□□□□ -1.2
SCN9A-202ENST00000409435 IFNLR1Q8IU57 520 aaPredicted RBP7.56□□□□□ -1.2
SCN9A-202ENST00000409435 ZNF483Q8TF39 744 aaPredicted RBP7.56□□□□□ -1.2
SCN9A-202ENST00000409435 SENP8Q96LD8 212 aa7.56□□□□□ -1.2
SCN9A-202ENST00000409435 PLEKHA4Q9H4M7 779 aa7.56□□□□□ -1.2
SCN9A-202ENST00000409435 LIMD1Q9UGP4 676 aa7.56□□□□□ -1.2
SCN9A-202ENST00000409435 SLC27A5Q9Y2P5 690 aa7.56□□□□□ -1.2
SCN9A-202ENST00000409435 NFE2L3Q9Y4A8 694 aa7.56□□□□□ -1.2
SCN9A-202ENST00000409435 CBX4O00257 560 aa7.56□□□□□ -1.2
SCN9A-202ENST00000409435 EEF2KO00418 725 aaKnown RBP7.56□□□□□ -1.2
SCN9A-202ENST00000409435 ACKR2O00590 384 aa7.56□□□□□ -1.2
SCN9A-202ENST00000409435 TAL1P17542 331 aaPredicted RBP7.56□□□□□ -1.2
SCN9A-202ENST00000409435 DUSP3P51452 185 aaPredicted RBP7.56□□□□□ -1.2
SCN9A-202ENST00000409435 TBX4P57082 545 aa7.56□□□□□ -1.2
SCN9A-202ENST00000409435 CREB5Q02930 508 aa7.56□□□□□ -1.2
SCN9A-202ENST00000409435 MAN2A1Q16706 1144 aa7.56□□□□□ -1.2
SCN9A-202ENST00000409435 KCTD16Q68DU8 428 aa7.56□□□□□ -1.2
SCN9A-202ENST00000409435 ESRP1Q6NXG1 681 aaKnown RBP7.56□□□□□ -1.2
SCN9A-202ENST00000409435 CYB5D1Q6P9G0 228 aa7.56□□□□□ -1.2
SCN9A-202ENST00000409435 TRIM72Q6ZMU5 477 aa7.56□□□□□ -1.2
SCN9A-202ENST00000409435 NAT16Q8N8M0 369 aa7.56□□□□□ -1.2
SCN9A-202ENST00000409435 CATSPER1Q8NEC5 780 aa7.56□□□□□ -1.2
SCN9A-202ENST00000409435 PRCCQ92733 491 aaPredicted RBP7.56□□□□□ -1.2
SCN9A-202ENST00000409435 HIC2Q96JB3 615 aa7.56□□□□□ -1.2
SCN9A-202ENST00000409435 TRIM45Q9H8W5 580 aaPredicted RBP7.56□□□□□ -1.2
SCN9A-202ENST00000409435 MRPL40Q9NQ50 206 aaKnown RBP7.56□□□□□ -1.2
SCN9A-202ENST00000409435 KLC4Q9NSK0 619 aa7.56□□□□□ -1.2
SCN9A-202ENST00000409435 SPATA31C2B4DYI2 1134 aa7.56□□□□□ -1.2
SCN9A-202ENST00000409435 RRP8O43159 456 aaKnown RBP7.56□□□□□ -1.2
SCN9A-202ENST00000409435 MTRF1O75570 445 aaKnown RBP7.56□□□□□ -1.2
SCN9A-202ENST00000409435 TCP1P17987 556 aaKnown RBP7.56□□□□□ -1.2
SCN9A-202ENST00000409435 NPY2RP49146 381 aa7.56□□□□□ -1.2
SCN9A-202ENST00000409435 CRYMQ14894 314 aa7.56□□□□□ -1.2
SCN9A-202ENST00000409435 ADCK5Q3MIX3 580 aa7.56□□□□□ -1.2
SCN9A-202ENST00000409435 STX19Q8N4C7 294 aa7.56□□□□□ -1.2
SCN9A-202ENST00000409435 MCOLN3Q8TDD5 553 aa7.56□□□□□ -1.2
SCN9A-202ENST00000409435 EGFL8Q99944 293 aa7.56□□□□□ -1.2
SCN9A-202ENST00000409435 NDE1Q9NXR1 346 aa7.56□□□□□ -1.2
SCN9A-202ENST00000409435 TNFSF13BQ9Y275 285 aa7.56□□□□□ -1.2
SCN9A-202ENST00000409435 NEDD8-MDP1E9PL57 170 aa7.56□□□□□ -1.2
SCN9A-202ENST00000409435 TTI1O43156 1089 aa7.56□□□□□ -1.2
SCN9A-202ENST00000409435 JUPP14923 745 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms