RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 F2P00734 622 aa10.54□□□□□ -0.72
USP54-201ENST00000339859 TGM2P21980 687 aa10.54□□□□□ -0.72
USP54-201ENST00000339859 TUBGCP4Q9UGJ1 667 aa10.54□□□□□ -0.72
USP54-201ENST00000339859 A0A0B4J269 797 aa10.54□□□□□ -0.72
USP54-201ENST00000339859 CCL16O15467 120 aa10.54□□□□□ -0.72
USP54-201ENST00000339859 DDX5P17844 614 aaKnown RBP10.54□□□□□ -0.72
USP54-201ENST00000339859 PPP3CCP48454 512 aa10.54□□□□□ -0.72
USP54-201ENST00000339859 HIF1AQ16665 826 aa10.54□□□□□ -0.72
USP54-201ENST00000339859 UGP2Q16851 508 aa10.54□□□□□ -0.72
USP54-201ENST00000339859 SLC45A4Q5BKX6 768 aa10.54□□□□□ -0.72
USP54-201ENST00000339859 B4GALNT4Q76KP1 1039 aa10.54□□□□□ -0.72
USP54-201ENST00000339859 SUSD6Q92537 303 aa10.54□□□□□ -0.72
USP54-201ENST00000339859 C1QTNF7Q9BXJ2 289 aa10.54□□□□□ -0.72
USP54-201ENST00000339859 AFF4Q9UHB7 1163 aaKnown RBP10.54□□□□□ -0.72
USP54-201ENST00000339859 TPX2Q9ULW0 747 aaKnown RBP10.54□□□□□ -0.72
USP54-201ENST00000339859 MYH1P12882 1939 aa10.54□□□□□ -0.72
USP54-201ENST00000339859 RAMP2O60895 175 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 SMIM24O75264 130 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 SLC7A5Q01650 507 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 ZNF284Q2VY69 593 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 VSTM1Q6UX27 236 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 TRIM67Q6ZTA4 783 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 FAM131BQ86XD5 332 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 MCOLN2Q8IZK6 566 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 ANKRD52Q8NB46 1076 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 EMID1Q96A84 441 aaPredicted RBP10.53□□□□□ -0.72
USP54-201ENST00000339859 ZBTB9Q96C00 473 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 EIF2AQ9BY44 585 aaKnown RBP10.53□□□□□ -0.72
USP54-201ENST00000339859 ZNF212Q9UDV6 495 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 PGAP2Q9UHJ9 254 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 BCAP29Q9UHQ4 241 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 PLAGL2Q9UPG8 496 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 SLC27A5Q9Y2P5 690 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 SLX4Q8IY92 1834 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 WNK3Q9BYP7 1800 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 ADGRA2Q96PE1 1338 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 ALDH1A2O94788 518 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 ARIH2O95376 493 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 HIST1H2AGP0C0S8 130 aaPredicted RBP10.53□□□□□ -0.72
USP54-201ENST00000339859 CYP2A6P11509 494 aaPredicted RBP10.53□□□□□ -0.72
USP54-201ENST00000339859 TYMPP19971 482 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 HIST1H2ADP20671 130 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 ATG16L1Q676U5 607 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 SLC39A5Q6ZMH5 540 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 ZBED8Q8IZ13 594 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 TC2NQ8N9U0 490 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 HIST1H2AHQ96KK5 128 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 HIST1H2AJQ99878 128 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 H2AFJQ9BTM1 129 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 OR1E1P30953 314 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 TPD52P55327 224 aaPredicted RBP10.53□□□□□ -0.72
USP54-201ENST00000339859 DLG4P78352 724 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 KCNA1Q09470 495 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 AARS2Q5JTZ9 985 aaKnown RBP10.53□□□□□ -0.72
USP54-201ENST00000339859 THEMIS2Q5TEJ8 643 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 MEI1Q5TIA1 1274 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 DEFB106AQ8N104 65 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 SLC20A1Q8WUM9 679 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 BSNDQ8WZ55 320 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 RUBCNQ92622 972 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 DUSP9Q99956 384 aaKnown RBP10.53□□□□□ -0.72
USP54-201ENST00000339859 CENPKQ9BS16 269 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 TRAIPQ9BWF2 469 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 RAB6BQ9NRW1 208 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 DNAJC17Q9NVM6 304 aaKnown RBP10.53□□□□□ -0.72
USP54-201ENST00000339859 OGFRQ9NZT2 677 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 XPO7Q9UIA9 1087 aaKnown RBP10.53□□□□□ -0.72
USP54-201ENST00000339859 CRLS1Q9UJA2 301 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 CYBAP13498 195 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 TUBP50607 506 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 SGCGQ13326 291 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 MKRN4PQ13434 485 aaPredicted RBP10.53□□□□□ -0.72
USP54-201ENST00000339859 PDAP1Q13442 181 aaKnown RBP10.53□□□□□ -0.72
USP54-201ENST00000339859 DCLK2Q8N568 766 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 TPCN2Q8NHX9 752 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 ATP13A1Q9HD20 1204 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 TBC1D3BA6NDS4 549 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 PRR23AA6NEV1 266 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 PROSCO94903 275 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 ACSL3O95573 720 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 NOS2P35228 1153 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 CCT5P48643 541 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 POU5F1Q01860 360 aaKnown RBP10.53□□□□□ -0.72
USP54-201ENST00000339859 CBWD6Q4V339 395 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 TFDP3Q5H9I0 405 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 CBWD3Q5JTY5 395 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 CBWD5Q5RIA9 395 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 ULK4Q96C45 1275 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 IL23AQ9NPF7 189 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 ARHGEF38Q9NXL2 777 aa10.53□□□□□ -0.72
USP54-201ENST00000339859 COPEO14579 308 aa10.52□□□□□ -0.72
USP54-201ENST00000339859 XPO1O14980 1071 aaKnown RBP10.52□□□□□ -0.72
USP54-201ENST00000339859 CNMDO75829 334 aa10.52□□□□□ -0.72
USP54-201ENST00000339859 PTPN2P17706 415 aa10.52□□□□□ -0.72
USP54-201ENST00000339859 SESN2P58004 480 aaPredicted RBP10.52□□□□□ -0.72
USP54-201ENST00000339859 ENPEPQ07075 957 aa10.52□□□□□ -0.72
USP54-201ENST00000339859 ZRANB3Q5FWF4 1079 aa10.52□□□□□ -0.72
USP54-201ENST00000339859 ARSHQ5FYA8 562 aa10.52□□□□□ -0.72
USP54-201ENST00000339859 METTL3Q86U44 580 aaKnown RBP10.52□□□□□ -0.72
USP54-201ENST00000339859 HJURPQ8NCD3 748 aaPredicted RBP10.52□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms