RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 KIDINS220Q9ULH0 1771 aa18.72■□□□□ 0.59
SHROOM1-208ENST00000617339 GSE1Q14687 1217 aa18.72■□□□□ 0.59
SHROOM1-208ENST00000617339 TSPOAP1O95153 1857 aa18.71■□□□□ 0.59
SHROOM1-208ENST00000617339 TSR2Q969E8 191 aaKnown RBP18.7■□□□□ 0.58
SHROOM1-208ENST00000617339 BACH2Q9BYV9 841 aa18.7■□□□□ 0.58
SHROOM1-208ENST00000617339 SLC52A1Q9NWF4 448 aa18.7■□□□□ 0.58
SHROOM1-208ENST00000617339 USP35Q9P2H5 1018 aa18.7■□□□□ 0.58
SHROOM1-208ENST00000617339 ZRANB1Q9UGI0 708 aa18.7■□□□□ 0.58
SHROOM1-208ENST00000617339 TNNQ9UQP3 1299 aa18.7■□□□□ 0.58
SHROOM1-208ENST00000617339 HMOX1P09601 288 aa18.7■□□□□ 0.58
SHROOM1-208ENST00000617339 SLC26A8Q96RN1 970 aa18.7■□□□□ 0.58
SHROOM1-208ENST00000617339 ERVK-7P63135 1459 aa18.7■□□□□ 0.58
SHROOM1-208ENST00000617339 ELL2O00472 640 aaPredicted RBP18.69■□□□□ 0.58
SHROOM1-208ENST00000617339 SPHKAPQ2M3C7 1700 aa18.69■□□□□ 0.58
SHROOM1-208ENST00000617339 MADDQ8WXG6 1647 aa18.69■□□□□ 0.58
SHROOM1-208ENST00000617339 CEP152O94986 1710 aa18.69■□□□□ 0.58
SHROOM1-208ENST00000617339 EIF2AK4Q9P2K8 1649 aaKnown RBP18.69■□□□□ 0.58
SHROOM1-208ENST00000617339 UBE2Q2Q8WVN8 375 aa18.68■□□□□ 0.58
SHROOM1-208ENST00000617339 RBM33Q96EV2 1170 aaKnown RBP18.68■□□□□ 0.58
SHROOM1-208ENST00000617339 SLFN5Q08AF3 891 aa18.68■□□□□ 0.58
SHROOM1-208ENST00000617339 NFKBIBQ15653 356 aa18.68■□□□□ 0.58
SHROOM1-208ENST00000617339 POLR1AO95602 1720 aaPredicted RBP18.68■□□□□ 0.58
SHROOM1-208ENST00000617339 WWC1Q8IX03 1113 aa18.68■□□□□ 0.58
SHROOM1-208ENST00000617339 INO80Q9ULG1 1556 aaPredicted RBP18.67■□□□□ 0.58
SHROOM1-208ENST00000617339 RNF123Q5XPI4 1314 aa18.67■□□□□ 0.58
SHROOM1-208ENST00000617339 PPRC1Q5VV67 1664 aaKnown RBP18.66■□□□□ 0.58
SHROOM1-208ENST00000617339 ASXL1Q8IXJ9 1541 aa18.66■□□□□ 0.58
SHROOM1-208ENST00000617339 TET3O43151 1660 aa18.66■□□□□ 0.58
SHROOM1-208ENST00000617339 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.65■□□□□ 0.58
SHROOM1-208ENST00000617339 EFCAB6Q5THR3 1501 aa18.64■□□□□ 0.57
SHROOM1-208ENST00000617339 HDGFL2Q7Z4V5 671 aaPredicted RBP18.64■□□□□ 0.57
SHROOM1-208ENST00000617339 TERF2IPQ9NYB0 399 aa18.64■□□□□ 0.57
SHROOM1-208ENST00000617339 RNF17Q9BXT8 1623 aaKnown RBP18.63■□□□□ 0.57
SHROOM1-208ENST00000617339 RPGRIP1LQ68CZ1 1315 aa18.63■□□□□ 0.57
SHROOM1-208ENST00000617339 THUMPD2Q9BTF0 503 aaKnown RBP18.63■□□□□ 0.57
SHROOM1-208ENST00000617339 MLH3Q9UHC1 1453 aa18.62■□□□□ 0.57
SHROOM1-208ENST00000617339 MAPK8IP3Q9UPT6 1336 aa18.62■□□□□ 0.57
SHROOM1-208ENST00000617339 RRS1Q15050 365 aaKnown RBP18.62■□□□□ 0.57
SHROOM1-208ENST00000617339 FYB1O15117 783 aa18.62■□□□□ 0.57
SHROOM1-208ENST00000617339 ARXQ96QS3 562 aa18.62■□□□□ 0.57
SHROOM1-208ENST00000617339 ARAP3Q8WWN8 1544 aa18.61■□□□□ 0.57
SHROOM1-208ENST00000617339 RUNDC1Q96C34 613 aa18.61■□□□□ 0.57
SHROOM1-208ENST00000617339 MROH1Q8NDA8 1641 aa18.61■□□□□ 0.57
SHROOM1-208ENST00000617339 E9PSI1 815 aa18.6■□□□□ 0.57
SHROOM1-208ENST00000617339 NME9Q86XW9 330 aa18.6■□□□□ 0.57
SHROOM1-208ENST00000617339 ABCA6Q8N139 1617 aa18.59■□□□□ 0.57
SHROOM1-208ENST00000617339 DDRGK1Q96HY6 314 aa18.59■□□□□ 0.57
SHROOM1-208ENST00000617339 NUTM2GQ5VZR2 741 aa18.59■□□□□ 0.57
SHROOM1-208ENST00000617339 FRMPD1Q5SYB0 1578 aa18.59■□□□□ 0.57
SHROOM1-208ENST00000617339 ABCC3O15438 1527 aa18.58■□□□□ 0.57
SHROOM1-208ENST00000617339 PMFBP1Q8TBY8 1022 aa18.58■□□□□ 0.57
SHROOM1-208ENST00000617339 EMILIN1Q9Y6C2 1016 aa18.58■□□□□ 0.57
SHROOM1-208ENST00000617339 PIK3C2GO75747 1445 aa18.58■□□□□ 0.56
SHROOM1-208ENST00000617339 RIPK4P57078 832 aa18.57■□□□□ 0.56
SHROOM1-208ENST00000617339 A0A1W2PP64 1363 aa18.57■□□□□ 0.56
SHROOM1-208ENST00000617339 HDGFP51858 240 aaKnown RBP18.57■□□□□ 0.56
SHROOM1-208ENST00000617339 MAP3K4Q9Y6R4 1608 aa18.57■□□□□ 0.56
SHROOM1-208ENST00000617339 HECW2Q9P2P5 1572 aa18.57■□□□□ 0.56
SHROOM1-208ENST00000617339 KIF1BO60333 1816 aa18.56■□□□□ 0.56
SHROOM1-208ENST00000617339 MROH2AA6NES4 1674 aa18.56■□□□□ 0.56
SHROOM1-208ENST00000617339 FRAT2O75474 233 aaPredicted RBP18.56■□□□□ 0.56
SHROOM1-208ENST00000617339 EID1Q9Y6B2 187 aa18.56■□□□□ 0.56
SHROOM1-208ENST00000617339 BLMP54132 1417 aaPredicted RBP18.55■□□□□ 0.56
SHROOM1-208ENST00000617339 EXOSC9Q06265 439 aaKnown RBP18.54■□□□□ 0.56
SHROOM1-208ENST00000617339 DIAPH1O60610 1272 aaKnown RBP18.54■□□□□ 0.56
SHROOM1-208ENST00000617339 MS4A1P11836 297 aa18.54■□□□□ 0.56
SHROOM1-208ENST00000617339 FTSJ3Q8IY81 847 aaKnown RBP18.53■□□□□ 0.56
SHROOM1-208ENST00000617339 SMC4Q9NTJ3 1288 aa18.53■□□□□ 0.56
SHROOM1-208ENST00000617339 PRKAR2BP31323 418 aa18.52■□□□□ 0.56
SHROOM1-208ENST00000617339 NEO1Q92859 1461 aa18.52■□□□□ 0.56
SHROOM1-208ENST00000617339 IGHDP01880 384 aa18.52■□□□□ 0.56
SHROOM1-208ENST00000617339 RLBP1P12271 317 aa18.51■□□□□ 0.55
SHROOM1-208ENST00000617339 DCTN1Q14203 1278 aa18.51■□□□□ 0.55
SHROOM1-208ENST00000617339 VWDEQ8N2E2 1590 aa18.51■□□□□ 0.55
SHROOM1-208ENST00000617339 DEPDC5O75140 1603 aa18.5■□□□□ 0.55
SHROOM1-208ENST00000617339 ZNF521Q96K83 1311 aa18.5■□□□□ 0.55
SHROOM1-208ENST00000617339 MYOM2P54296 1465 aa18.5■□□□□ 0.55
SHROOM1-208ENST00000617339 NUDT16Q96DE0 195 aaKnown RBP18.5■□□□□ 0.55
SHROOM1-208ENST00000617339 NGDNQ8NEJ9 315 aaKnown RBP18.49■□□□□ 0.55
SHROOM1-208ENST00000617339 LTV1Q96GA3 475 aaPredicted RBP18.49■□□□□ 0.55
SHROOM1-208ENST00000617339 YTHDC2Q9H6S0 1430 aaKnown RBP18.49■□□□□ 0.55
SHROOM1-208ENST00000617339 TMPOP42166 694 aaKnown RBP18.48■□□□□ 0.55
SHROOM1-208ENST00000617339 IQGAP1P46940 1657 aa18.48■□□□□ 0.55
SHROOM1-208ENST00000617339 ITPRIPQ8IWB1 547 aa18.48■□□□□ 0.55
SHROOM1-208ENST00000617339 ZMYM3Q14202 1370 aa18.47■□□□□ 0.55
SHROOM1-208ENST00000617339 PHACTR3Q96KR7 559 aa18.47■□□□□ 0.55
SHROOM1-208ENST00000617339 KDM5AP29375 1690 aaKnown RBP18.47■□□□□ 0.55
SHROOM1-208ENST00000617339 RARSP54136 660 aaKnown RBP18.47■□□□□ 0.55
SHROOM1-208ENST00000617339 DIP2CQ9Y2E4 1556 aa18.47■□□□□ 0.55
SHROOM1-208ENST00000617339 ANKRD36BQ8N2N9 1353 aa18.47■□□□□ 0.55
SHROOM1-208ENST00000617339 FAM83GA6ND36 823 aa18.46■□□□□ 0.55
SHROOM1-208ENST00000617339 ADGRB3O60242 1522 aa18.46■□□□□ 0.55
SHROOM1-208ENST00000617339 ZMYM4Q5VZL5 1548 aa18.46■□□□□ 0.55
SHROOM1-208ENST00000617339 METP08581 1390 aa18.46■□□□□ 0.55
SHROOM1-208ENST00000617339 LTKP29376 864 aa18.46■□□□□ 0.54
SHROOM1-208ENST00000617339 WASLO00401 505 aaPredicted RBP18.44■□□□□ 0.54
SHROOM1-208ENST00000617339 SYNMO15061 1565 aa18.44■□□□□ 0.54
SHROOM1-208ENST00000617339 COG3Q96JB2 828 aa18.44■□□□□ 0.54
SHROOM1-208ENST00000617339 MYH16Q9H6N6 1097 aa18.44■□□□□ 0.54
SHROOM1-208ENST00000617339 POLKQ9UBT6 870 aa18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 83.6 ms