RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 RAB3GAP1Q15042 981 aa17.06■□□□□ 0.32
SHMT2-226ENST00000556825 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.06■□□□□ 0.32
SHMT2-226ENST00000556825 CARD10Q9BWT7 1032 aa17.06■□□□□ 0.32
SHMT2-226ENST00000556825 FEZ2Q9UHY8 353 aaPredicted RBP17.06■□□□□ 0.32
SHMT2-226ENST00000556825 ZMYM3Q14202 1370 aa17.06■□□□□ 0.32
SHMT2-226ENST00000556825 SYNJ2O15056 1496 aa17.05■□□□□ 0.32
SHMT2-226ENST00000556825 HFM1A2PYH4 1435 aa17.05■□□□□ 0.32
SHMT2-226ENST00000556825 TERF2Q15554 542 aa17.05■□□□□ 0.32
SHMT2-226ENST00000556825 PRR29P0C7W0 189 aa17.04■□□□□ 0.32
SHMT2-226ENST00000556825 HSCBQ8IWL3 235 aa17.04■□□□□ 0.32
SHMT2-226ENST00000556825 RBSNQ9H1K0 784 aa17.04■□□□□ 0.32
SHMT2-226ENST00000556825 EIF3AQ14152 1382 aaKnown RBP17.04■□□□□ 0.32
SHMT2-226ENST00000556825 L3MBTL2Q969R5 705 aa17.03■□□□□ 0.32
SHMT2-226ENST00000556825 FGD6Q6ZV73 1430 aa17.03■□□□□ 0.32
SHMT2-226ENST00000556825 MFAP1P55081 439 aaKnown RBP17.02■□□□□ 0.32
SHMT2-226ENST00000556825 FBLN2P98095 1184 aa17.02■□□□□ 0.32
SHMT2-226ENST00000556825 LMOD3Q0VAK6 560 aa17.02■□□□□ 0.32
SHMT2-226ENST00000556825 MTUS2Q5JR59 1369 aa17.02■□□□□ 0.32
SHMT2-226ENST00000556825 KIF15Q9NS87 1388 aa17.02■□□□□ 0.32
SHMT2-226ENST00000556825 FAM177BA6PVY3 158 aa17.02■□□□□ 0.32
SHMT2-226ENST00000556825 IGHDP01880 384 aa17.02■□□□□ 0.32
SHMT2-226ENST00000556825 MIA2Q96PC5 1412 aa17.02■□□□□ 0.31
SHMT2-226ENST00000556825 INSRP06213 1382 aa17.01■□□□□ 0.31
SHMT2-226ENST00000556825 PHF14O94880 888 aa17.01■□□□□ 0.31
SHMT2-226ENST00000556825 SMC5Q8IY18 1101 aa17.01■□□□□ 0.31
SHMT2-226ENST00000556825 PTPN23Q9H3S7 1636 aa17.01■□□□□ 0.31
SHMT2-226ENST00000556825 GOLGA6L22H0YM25 854 aa17.01■□□□□ 0.31
SHMT2-226ENST00000556825 TNNT3P45378 269 aaPredicted RBP17.01■□□□□ 0.31
SHMT2-226ENST00000556825 DDX49Q9Y6V7 483 aaKnown RBP17.01■□□□□ 0.31
SHMT2-226ENST00000556825 BANK1Q8NDB2 785 aa17■□□□□ 0.31
SHMT2-226ENST00000556825 MYCBPQ99417 103 aaPredicted RBP17■□□□□ 0.31
SHMT2-226ENST00000556825 RTEL1-TNFRSF6BF6WH68 1400 aa16.99■□□□□ 0.31
SHMT2-226ENST00000556825 HECW1Q76N89 1606 aa16.99■□□□□ 0.31
SHMT2-226ENST00000556825 MLECQ14165 292 aa16.99■□□□□ 0.31
SHMT2-226ENST00000556825 TMED8Q6PL24 325 aaPredicted RBP16.99■□□□□ 0.31
SHMT2-226ENST00000556825 SIRT1Q96EB6 747 aa16.99■□□□□ 0.31
SHMT2-226ENST00000556825 C22orf23Q9BZE7 217 aa16.99■□□□□ 0.31
SHMT2-226ENST00000556825 PLEKHH2Q8IVE3 1493 aa16.99■□□□□ 0.31
SHMT2-226ENST00000556825 KIAA1107Q9UPP5 1409 aa16.99■□□□□ 0.31
SHMT2-226ENST00000556825 NOP2P46087 812 aaKnown RBP16.98■□□□□ 0.31
SHMT2-226ENST00000556825 NBPF8Q3BBV2 869 aa16.98■□□□□ 0.31
SHMT2-226ENST00000556825 PIBF1Q8WXW3 757 aa16.98■□□□□ 0.31
SHMT2-226ENST00000556825 CEP170Q5SW79 1584 aa16.98■□□□□ 0.31
SHMT2-226ENST00000556825 KIAA0556O60303 1618 aa16.98■□□□□ 0.31
SHMT2-226ENST00000556825 NOLC1Q14978 699 aaKnown RBP eCLIP16.98■□□□□ 0.311e-8■■■□□ 15.5
SHMT2-226ENST00000556825 CLEC17AQ6ZS10 378 aa16.98■□□□□ 0.31
SHMT2-226ENST00000556825 CEP120Q8N960 986 aa16.98■□□□□ 0.31
SHMT2-226ENST00000556825 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.98■□□□□ 0.313e-7■■□□□ 13.1
SHMT2-226ENST00000556825 MORC2Q9Y6X9 1032 aaPredicted RBP16.98■□□□□ 0.31
SHMT2-226ENST00000556825 ARHGAP31Q2M1Z3 1444 aa16.98■□□□□ 0.31
SHMT2-226ENST00000556825 DISP1Q96F81 1524 aa16.97■□□□□ 0.31
SHMT2-226ENST00000556825 GTF2A1P52655 376 aaPredicted RBP16.97■□□□□ 0.31
SHMT2-226ENST00000556825 ZSCAN23Q3MJ62 389 aa16.97■□□□□ 0.31
SHMT2-226ENST00000556825 DDX41Q9UJV9 622 aaKnown RBP16.97■□□□□ 0.31
SHMT2-226ENST00000556825 PTPRKQ15262 1439 aa16.97■□□□□ 0.31
SHMT2-226ENST00000556825 BRPF1P55201 1214 aaPredicted RBP16.96■□□□□ 0.31
SHMT2-226ENST00000556825 CREBRFQ8IUR6 639 aa16.96■□□□□ 0.31
SHMT2-226ENST00000556825 NCAPGQ9BPX3 1015 aa16.96■□□□□ 0.31
SHMT2-226ENST00000556825 CTNNA3Q9UI47 895 aa16.96■□□□□ 0.31
SHMT2-226ENST00000556825 CTIFO43310 598 aaKnown RBP16.96■□□□□ 0.3
SHMT2-226ENST00000556825 CTR9Q6PD62 1173 aa16.96■□□□□ 0.3
SHMT2-226ENST00000556825 EGFL6Q8IUX8 553 aa16.96■□□□□ 0.3
SHMT2-226ENST00000556825 ZMYM4Q5VZL5 1548 aa16.95■□□□□ 0.3
SHMT2-226ENST00000556825 SUPT6HQ7KZ85 1726 aaKnown RBP16.95■□□□□ 0.3
SHMT2-226ENST00000556825 SNX21Q969T3 373 aa16.95■□□□□ 0.3
SHMT2-226ENST00000556825 SMC4Q9NTJ3 1288 aa16.95■□□□□ 0.3
SHMT2-226ENST00000556825 MAGI3Q5TCQ9 1506 aa16.95■□□□□ 0.3
SHMT2-226ENST00000556825 FKBP5Q13451 457 aaPredicted RBP16.94■□□□□ 0.3
SHMT2-226ENST00000556825 EHBP1L1Q8N3D4 1523 aa16.94■□□□□ 0.3
SHMT2-226ENST00000556825 MCCP23508 829 aa16.94■□□□□ 0.3
SHMT2-226ENST00000556825 PLPPR3Q6T4P5 718 aa16.94■□□□□ 0.3
SHMT2-226ENST00000556825 EP400NLQ6ZTU2 488 aa16.94■□□□□ 0.3
SHMT2-226ENST00000556825 DIAPH3Q9NSV4 1193 aa16.94■□□□□ 0.3
SHMT2-226ENST00000556825 RSPH14Q9UHP6 348 aa16.94■□□□□ 0.3
SHMT2-226ENST00000556825 BLMP54132 1417 aaPredicted RBP16.94■□□□□ 0.3
SHMT2-226ENST00000556825 NUP160Q12769 1436 aa16.94■□□□□ 0.3
SHMT2-226ENST00000556825 PRIM1P49642 420 aaKnown RBP16.93■□□□□ 0.3
SHMT2-226ENST00000556825 CEP83Q9Y592 693 aa16.93■□□□□ 0.3
SHMT2-226ENST00000556825 EPRSP07814 1512 aaKnown RBP16.93■□□□□ 0.3
SHMT2-226ENST00000556825 NLRP13Q86W25 1043 aa16.93■□□□□ 0.3
SHMT2-226ENST00000556825 SPTLC3Q9NUV7 552 aa16.93■□□□□ 0.3
SHMT2-226ENST00000556825 NAIPQ13075 1403 aa16.92■□□□□ 0.3
SHMT2-226ENST00000556825 POLR3GLQ9BT43 218 aa16.92■□□□□ 0.3
SHMT2-226ENST00000556825 NPC1L1Q9UHC9 1359 aa16.92■□□□□ 0.3
SHMT2-226ENST00000556825 DHX16O60231 1041 aaKnown RBP16.92■□□□□ 0.3
SHMT2-226ENST00000556825 CT47A1Q5JQC4 288 aaPredicted RBP16.92■□□□□ 0.3
SHMT2-226ENST00000556825 SPINK5Q9NQ38 1064 aaPredicted RBP16.92■□□□□ 0.3
SHMT2-226ENST00000556825 ZBTB7CA1YPR0 619 aa16.91■□□□□ 0.3
SHMT2-226ENST00000556825 ERICH4A6NGS2 130 aa16.91■□□□□ 0.3
SHMT2-226ENST00000556825 SYCP1Q15431 976 aa16.91■□□□□ 0.3
SHMT2-226ENST00000556825 JPH4Q96JJ6 628 aa16.91■□□□□ 0.3
SHMT2-226ENST00000556825 TRERF1Q96PN7 1200 aa16.91■□□□□ 0.3
SHMT2-226ENST00000556825 ICE2Q659A1 982 aa16.9■□□□□ 0.3
SHMT2-226ENST00000556825 CAVIN1Q6NZI2 390 aaKnown RBP16.9■□□□□ 0.3
SHMT2-226ENST00000556825 TICAM2Q86XR7 235 aa16.9■□□□□ 0.3
SHMT2-226ENST00000556825 BRMS1Q9HCU9 246 aa16.9■□□□□ 0.3
SHMT2-226ENST00000556825 BCORL1Q5H9F3 1711 aa16.9■□□□□ 0.3
SHMT2-226ENST00000556825 RIOK3O14730 519 aaKnown RBP16.89■□□□□ 0.29
SHMT2-226ENST00000556825 ARHGEF11O15085 1522 aa16.89■□□□□ 0.29
SHMT2-226ENST00000556825 CCDC172P0C7W6 258 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms