RNA–Protein interactions for RNA: ENST00000490993.5

NPHP3-208, Transcript of nephrocystin 3, humanhuman

TSL 5

Gene NPHP3, Length 5,197 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-208ENST00000490993 PER1O15534 1290 aaPredicted RBP9.35□□□□□ -0.91
NPHP3-208ENST00000490993 ABCA9Q8IUA7 1624 aa9.34□□□□□ -0.91
NPHP3-208ENST00000490993 TCP11L2Q8N4U5 519 aa9.34□□□□□ -0.91
NPHP3-208ENST00000490993 MYOM2P54296 1465 aa9.34□□□□□ -0.91
NPHP3-208ENST00000490993 HSP90AA1P07900 732 aaKnown RBP9.34□□□□□ -0.91
NPHP3-208ENST00000490993 CT47B1P0C2W7 299 aaPredicted RBP9.34□□□□□ -0.91
NPHP3-208ENST00000490993 AMER1Q5JTC6 1135 aaPredicted RBP9.34□□□□□ -0.91
NPHP3-208ENST00000490993 ITPRIPQ8IWB1 547 aa9.34□□□□□ -0.91
NPHP3-208ENST00000490993 THEMISQ8N1K5 641 aaPredicted RBP9.34□□□□□ -0.92
NPHP3-208ENST00000490993 PLA2R1Q13018 1463 aa9.33□□□□□ -0.92
NPHP3-208ENST00000490993 RIPK4P57078 832 aa9.33□□□□□ -0.92
NPHP3-208ENST00000490993 CASC1Q6TDU7 716 aa9.33□□□□□ -0.92
NPHP3-208ENST00000490993 PIK3C2GO75747 1445 aa9.33□□□□□ -0.92
NPHP3-208ENST00000490993 TXNDC2Q86VQ3 553 aa9.33□□□□□ -0.92
NPHP3-208ENST00000490993 AMPHP49418 695 aa9.33□□□□□ -0.92
NPHP3-208ENST00000490993 CABP1Q9NZU7 370 aa9.33□□□□□ -0.92
NPHP3-208ENST00000490993 PRDM15P57071 1507 aaPredicted RBP9.33□□□□□ -0.92
NPHP3-208ENST00000490993 HECW2Q9P2P5 1572 aa9.32□□□□□ -0.92
NPHP3-208ENST00000490993 LRPPRCP42704 1394 aaKnown RBP9.32□□□□□ -0.92
NPHP3-208ENST00000490993 SOX12O15370 315 aa9.32□□□□□ -0.92
NPHP3-208ENST00000490993 SLFN5Q08AF3 891 aa9.32□□□□□ -0.92
NPHP3-208ENST00000490993 PDE3AQ14432 1141 aa9.32□□□□□ -0.92
NPHP3-208ENST00000490993 FBXO31Q5XUX0 539 aaPredicted RBP9.32□□□□□ -0.92
NPHP3-208ENST00000490993 PAK3O75914 559 aaPredicted RBP9.32□□□□□ -0.92
NPHP3-208ENST00000490993 IPO9Q96P70 1041 aaKnown RBP9.32□□□□□ -0.92
NPHP3-208ENST00000490993 NBR1Q14596 966 aa9.31□□□□□ -0.92
NPHP3-208ENST00000490993 ANKRD36BQ8N2N9 1353 aa9.31□□□□□ -0.92
NPHP3-208ENST00000490993 MAGI2Q86UL8 1455 aa9.31□□□□□ -0.92
NPHP3-208ENST00000490993 GNAI1P63096 354 aa9.31□□□□□ -0.92
NPHP3-208ENST00000490993 KIF16BQ96L93 1317 aa9.31□□□□□ -0.92
NPHP3-208ENST00000490993 NPATQ14207 1427 aa9.3□□□□□ -0.92
NPHP3-208ENST00000490993 DDX19BQ9UMR2 479 aa9.3□□□□□ -0.92
NPHP3-208ENST00000490993 SBNO2Q9Y2G9 1366 aa9.3□□□□□ -0.92
NPHP3-208ENST00000490993 PDE4AP27815 886 aa9.3□□□□□ -0.92
NPHP3-208ENST00000490993 LMOD2Q6P5Q4 547 aa9.3□□□□□ -0.92
NPHP3-208ENST00000490993 POLR3AO14802 1390 aaPredicted RBP9.29□□□□□ -0.92
NPHP3-208ENST00000490993 FAM161AQ3B820 660 aa9.29□□□□□ -0.92
NPHP3-208ENST00000490993 DZIP1LQ8IYY4 767 aaKnown RBP9.29□□□□□ -0.92
NPHP3-208ENST00000490993 TRPM1Q7Z4N2 1603 aa9.29□□□□□ -0.92
NPHP3-208ENST00000490993 TNRQ92752 1358 aa9.29□□□□□ -0.92
NPHP3-208ENST00000490993 CLUAP1Q96AJ1 413 aa9.29□□□□□ -0.92
NPHP3-208ENST00000490993 EFCAB6Q5THR3 1501 aa9.28□□□□□ -0.92
NPHP3-208ENST00000490993 FCHSD2O94868 740 aa9.28□□□□□ -0.92
NPHP3-208ENST00000490993 WWC1Q8IX03 1113 aa9.28□□□□□ -0.92
NPHP3-208ENST00000490993 COG6Q9Y2V7 657 aa9.28□□□□□ -0.92
NPHP3-208ENST00000490993 CCDC61Q9Y6R9 512 aa9.28□□□□□ -0.92
NPHP3-208ENST00000490993 NKTRP30414 1462 aaKnown RBP9.28□□□□□ -0.92
NPHP3-208ENST00000490993 RIMS2Q9UQ26 1411 aa9.28□□□□□ -0.92
NPHP3-208ENST00000490993 NUTM2FA1L443 756 aa9.28□□□□□ -0.92
NPHP3-208ENST00000490993 STK31Q9BXU1 1019 aa9.28□□□□□ -0.92
NPHP3-208ENST00000490993 ABCC11Q96J66 1382 aa9.28□□□□□ -0.92
NPHP3-208ENST00000490993 KIF1BO60333 1816 aa9.28□□□□□ -0.92
NPHP3-208ENST00000490993 KDM5AP29375 1690 aaKnown RBP9.28□□□□□ -0.92
NPHP3-208ENST00000490993 LAMC1P11047 1609 aa9.28□□□□□ -0.92
NPHP3-208ENST00000490993 SYNMO15061 1565 aa9.27□□□□□ -0.93
NPHP3-208ENST00000490993 NUDT16Q96DE0 195 aaKnown RBP9.27□□□□□ -0.93
NPHP3-208ENST00000490993 WASLO00401 505 aaPredicted RBP9.27□□□□□ -0.93
NPHP3-208ENST00000490993 SPHKAPQ2M3C7 1700 aa9.27□□□□□ -0.93
NPHP3-208ENST00000490993 API5Q9BZZ5 524 aaKnown RBP9.27□□□□□ -0.93
NPHP3-208ENST00000490993 LMTK2Q8IWU2 1503 aa9.26□□□□□ -0.93
NPHP3-208ENST00000490993 INO80Q9ULG1 1556 aaPredicted RBP9.26□□□□□ -0.93
NPHP3-208ENST00000490993 ZNF428Q96B54 188 aa9.26□□□□□ -0.93
NPHP3-208ENST00000490993 BCL2L13Q9BXK5 485 aa9.26□□□□□ -0.93
NPHP3-208ENST00000490993 PRKAR2BP31323 418 aa9.25□□□□□ -0.93
NPHP3-208ENST00000490993 DUSP27Q5VZP5 1158 aa9.25□□□□□ -0.93
NPHP3-208ENST00000490993 HMMRO75330 724 aa9.25□□□□□ -0.93
NPHP3-208ENST00000490993 CLTCL1P53675 1640 aa9.25□□□□□ -0.93
NPHP3-208ENST00000490993 BLMP54132 1417 aaPredicted RBP9.25□□□□□ -0.93
NPHP3-208ENST00000490993 ARHGAP31Q2M1Z3 1444 aa9.25□□□□□ -0.93
NPHP3-208ENST00000490993 YTHDC2Q9H6S0 1430 aaKnown RBP9.25□□□□□ -0.93
NPHP3-208ENST00000490993 WAPLQ7Z5K2 1190 aa9.25□□□□□ -0.93
NPHP3-208ENST00000490993 ABCC3O15438 1527 aa9.24□□□□□ -0.93
NPHP3-208ENST00000490993 PLEKHG5O94827 1062 aa9.24□□□□□ -0.93
NPHP3-208ENST00000490993 ZMYM4Q5VZL5 1548 aa9.24□□□□□ -0.93
NPHP3-208ENST00000490993 HDAC5Q9UQL6 1122 aa9.24□□□□□ -0.93
NPHP3-208ENST00000490993 HMOX1P09601 288 aa9.24□□□□□ -0.93
NPHP3-208ENST00000490993 E9PCH4 1651 aa9.23□□□□□ -0.93
NPHP3-208ENST00000490993 TMPOP42166 694 aaKnown RBP9.23□□□□□ -0.93
NPHP3-208ENST00000490993 CCDC27Q2M243 656 aa9.23□□□□□ -0.93
NPHP3-208ENST00000490993 CARD14Q9BXL6 1004 aa9.23□□□□□ -0.93
NPHP3-208ENST00000490993 MAP3K4Q9Y6R4 1608 aa9.23□□□□□ -0.93
NPHP3-208ENST00000490993 ANKLE2Q86XL3 938 aa9.23□□□□□ -0.93
NPHP3-208ENST00000490993 POLR1AO95602 1720 aaPredicted RBP9.23□□□□□ -0.93
NPHP3-208ENST00000490993 YEATS2Q9ULM3 1422 aa9.23□□□□□ -0.93
NPHP3-208ENST00000490993 ZMYM3Q14202 1370 aa9.23□□□□□ -0.93
NPHP3-208ENST00000490993 BCORL1Q5H9F3 1711 aa9.23□□□□□ -0.93
NPHP3-208ENST00000490993 EXOSC9Q06265 439 aaKnown RBP9.23□□□□□ -0.93
NPHP3-208ENST00000490993 PANK1Q8TE04 598 aa9.23□□□□□ -0.93
NPHP3-208ENST00000490993 BCAR3O75815 825 aa9.22□□□□□ -0.93
NPHP3-208ENST00000490993 MADDQ8WXG6 1647 aa9.22□□□□□ -0.93
NPHP3-208ENST00000490993 RNF17Q9BXT8 1623 aaKnown RBP9.22□□□□□ -0.93
NPHP3-208ENST00000490993 PSME1Q06323 249 aa9.22□□□□□ -0.93
NPHP3-208ENST00000490993 HSCBQ8IWL3 235 aa9.22□□□□□ -0.93
NPHP3-208ENST00000490993 IL16Q14005 1332 aa9.22□□□□□ -0.93
NPHP3-208ENST00000490993 NCBP3Q53F19 620 aaKnown RBP9.22□□□□□ -0.93
NPHP3-208ENST00000490993 ZFYVE9O95405 1425 aa9.22□□□□□ -0.93
NPHP3-208ENST00000490993 NFE2L2Q16236 605 aa9.22□□□□□ -0.93
NPHP3-208ENST00000490993 GAS2L2Q8NHY3 880 aa9.22□□□□□ -0.93
NPHP3-208ENST00000490993 ERVK-7P63135 1459 aa9.21□□□□□ -0.93
NPHP3-208ENST00000490993 RNF123Q5XPI4 1314 aa9.21□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms