RNA–Protein interactions for RNA: ENST00000489072.5

HMGN1-217, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 1,014 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-217ENST00000489072 KDM2AQ9Y2K7 1162 aa36.55■■■■□ 3.44
HMGN1-217ENST00000489072 DDX17Q92841 729 aaKnown RBP36.54■■■■□ 3.44
HMGN1-217ENST00000489072 RGS17Q9UGC6 210 aaPredicted RBP36.53■■■■□ 3.44
HMGN1-217ENST00000489072 ORAI2Q96SN7 254 aa36.52■■■■□ 3.44
HMGN1-217ENST00000489072 ADGRB1O14514 1584 aa36.51■■■■□ 3.44
HMGN1-217ENST00000489072 SOCS7O14512 581 aa36.5■■■■□ 3.43
HMGN1-217ENST00000489072 SIRT1Q96EB6 747 aa36.49■■■■□ 3.43
HMGN1-217ENST00000489072 LRP6O75581 1613 aa36.48■■■■□ 3.43
HMGN1-217ENST00000489072 SPATA31A6Q5VVP1 1343 aa36.46■■■■□ 3.43
HMGN1-217ENST00000489072 STAC3Q96MF2 364 aa36.46■■■■□ 3.43
HMGN1-217ENST00000489072 DLC1Q96QB1 1528 aa36.44■■■■□ 3.42
HMGN1-217ENST00000489072 FMN2Q9NZ56 1722 aa36.43■■■■□ 3.42
HMGN1-217ENST00000489072 LRRC59Q96AG4 307 aaKnown RBP36.4■■■■□ 3.42
HMGN1-217ENST00000489072 PRAM1Q96QH2 718 aa36.4■■■■□ 3.42
HMGN1-217ENST00000489072 NUTM2FA1L443 756 aa36.39■■■■□ 3.42
HMGN1-217ENST00000489072 ESCO1Q5FWF5 840 aa36.37■■■■□ 3.41
HMGN1-217ENST00000489072 SOS2Q07890 1332 aaPredicted RBP36.36■■■■□ 3.41
HMGN1-217ENST00000489072 SAFB2Q14151 953 aaKnown RBP eCLIP36.36■■■■□ 3.41
HMGN1-217ENST00000489072 PNPLA6Q8IY17 1366 aa36.36■■■■□ 3.41
HMGN1-217ENST00000489072 TRAK1Q9UPV9 953 aa36.34■■■■□ 3.41
HMGN1-217ENST00000489072 POTEAQ6S8J7 498 aa36.33■■■■□ 3.41
HMGN1-217ENST00000489072 RGPD8O14715 1765 aaPredicted RBP36.31■■■■□ 3.4
HMGN1-217ENST00000489072 NUTM2BA6NNL0 878 aaPredicted RBP36.31■■■■□ 3.4
HMGN1-217ENST00000489072 NUTM2EB1AL46 878 aaPredicted RBP36.31■■■■□ 3.4
HMGN1-217ENST00000489072 NUTM2AQ8IVF1 878 aaPredicted RBP36.31■■■■□ 3.4
HMGN1-217ENST00000489072 POGKQ9P215 609 aa36.31■■■■□ 3.4
HMGN1-217ENST00000489072 MEX3CQ5U5Q3 659 aaKnown RBP36.29■■■■□ 3.4
HMGN1-217ENST00000489072 PXDNQ92626 1479 aa36.28■■■■□ 3.4
HMGN1-217ENST00000489072 ADGRB2O60241 1585 aa36.27■■■■□ 3.4
HMGN1-217ENST00000489072 KIAA1210Q9ULL0 1709 aa36.27■■■■□ 3.4
HMGN1-217ENST00000489072 NPHP3Q7Z494 1330 aa36.27■■■■□ 3.4
HMGN1-217ENST00000489072 FOXO3O43524 673 aa36.26■■■■□ 3.4
HMGN1-217ENST00000489072 ARHGEF28Q8N1W1 1705 aaKnown RBP36.25■■■■□ 3.39
HMGN1-217ENST00000489072 KIF1AQ12756 1690 aa36.25■■■■□ 3.39
HMGN1-217ENST00000489072 SIN3AQ96ST3 1273 aa36.24■■■■□ 3.39
HMGN1-217ENST00000489072 XPCQ01831 940 aaPredicted RBP36.22■■■■□ 3.39
HMGN1-217ENST00000489072 USP32Q8NFA0 1604 aa36.21■■■■□ 3.39
HMGN1-217ENST00000489072 COL22A1Q8NFW1 1626 aaPredicted RBP36.19■■■■□ 3.38
HMGN1-217ENST00000489072 MINK1Q8N4C8 1332 aaPredicted RBP36.19■■■■□ 3.38
HMGN1-217ENST00000489072 HIRIP3Q9BW71 556 aaPredicted RBP36.19■■■■□ 3.38
HMGN1-217ENST00000489072 TRIM26Q12899 539 aaPredicted RBP36.17■■■■□ 3.38
HMGN1-217ENST00000489072 L3MBTL2Q969R5 705 aa36.17■■■■□ 3.38
HMGN1-217ENST00000489072 NBPF1Q3BBV0 1214 aa36.15■■■■□ 3.38
HMGN1-217ENST00000489072 ANKARQ7Z5J8 1434 aa36.15■■■■□ 3.38
HMGN1-217ENST00000489072 PHF8Q9UPP1 1060 aa36.14■■■■□ 3.38
HMGN1-217ENST00000489072 NEUROD1Q13562 356 aa36.12■■■■□ 3.37
HMGN1-217ENST00000489072 ZNF772Q68DY9 489 aaPredicted RBP36.12■■■■□ 3.37
HMGN1-217ENST00000489072 AFF2P51816 1311 aa36.1■■■■□ 3.37
HMGN1-217ENST00000489072 WASLO00401 505 aaPredicted RBP36.09■■■■□ 3.37
HMGN1-217ENST00000489072 ADAMTS2O95450 1211 aa36.09■■■■□ 3.37
HMGN1-217ENST00000489072 C8orf37Q96NL8 207 aa36.09■■■■□ 3.37
HMGN1-217ENST00000489072 TULP4Q9NRJ4 1543 aa36.08■■■■□ 3.37
HMGN1-217ENST00000489072 KRT28Q7Z3Y7 464 aa36.08■■■■□ 3.37
HMGN1-217ENST00000489072 PRR36Q9H6K5 1346 aa36.08■■■■□ 3.37
HMGN1-217ENST00000489072 SPATA31A3Q5VYP0 1347 aa36.06■■■■□ 3.36
HMGN1-217ENST00000489072 EIF3AQ14152 1382 aaKnown RBP36.04■■■■□ 3.36
HMGN1-217ENST00000489072 PMFBP1Q8TBY8 1022 aa36.04■■■■□ 3.36
HMGN1-217ENST00000489072 TRPM1Q7Z4N2 1603 aa36.01■■■■□ 3.36
HMGN1-217ENST00000489072 NGLY1Q96IV0 654 aa35.99■■■■□ 3.35
HMGN1-217ENST00000489072 MARF1Q9Y4F3 1742 aaKnown RBP35.99■■■■□ 3.35
HMGN1-217ENST00000489072 TNS3Q68CZ2 1445 aa35.99■■■■□ 3.35
HMGN1-217ENST00000489072 PSME1Q06323 249 aa35.98■■■■□ 3.35
HMGN1-217ENST00000489072 ATP7BP35670 1465 aa35.97■■■■□ 3.35
HMGN1-217ENST00000489072 SBNO1A3KN83 1393 aa35.96■■■■□ 3.35
HMGN1-217ENST00000489072 ITSN1Q15811 1721 aa35.94■■■■□ 3.34
HMGN1-217ENST00000489072 TRPM3Q9HCF6 1732 aaPredicted RBP35.94■■■■□ 3.34
HMGN1-217ENST00000489072 CDK19Q9BWU1 502 aa35.93■■■■□ 3.34
HMGN1-217ENST00000489072 RXRBP28702 533 aa35.92■■■■□ 3.34
HMGN1-217ENST00000489072 NUDT16Q96DE0 195 aaKnown RBP35.92■■■■□ 3.34
HMGN1-217ENST00000489072 QRICH2Q9H0J4 1663 aa35.91■■■■□ 3.34
HMGN1-217ENST00000489072 CENPJQ9HC77 1338 aaPredicted RBP35.9■■■■□ 3.34
HMGN1-217ENST00000489072 QTRT2Q9H974 415 aaKnown RBP35.9■■■■□ 3.34
HMGN1-217ENST00000489072 TOPAZ1Q8N9V7 1692 aa35.89■■■■□ 3.34
HMGN1-217ENST00000489072 FNBP4Q8N3X1 1017 aaPredicted RBP35.89■■■■□ 3.34
HMGN1-217ENST00000489072 ABCA3Q99758 1704 aa35.88■■■■□ 3.33
HMGN1-217ENST00000489072 NBPF8Q3BBV2 869 aa35.87■■■■□ 3.33
HMGN1-217ENST00000489072 USP21Q9UK80 565 aa35.86■■■■□ 3.33
HMGN1-217ENST00000489072 ALS2Q96Q42 1657 aa35.86■■■■□ 3.33
HMGN1-217ENST00000489072 ARHGEF10O15013 1369 aa35.86■■■■□ 3.33
HMGN1-217ENST00000489072 GPRASP1Q5JY77 1395 aa35.86■■■■□ 3.33
HMGN1-217ENST00000489072 LMOD2Q6P5Q4 547 aa35.85■■■■□ 3.33
HMGN1-217ENST00000489072 NGDNQ8NEJ9 315 aaKnown RBP35.85■■■■□ 3.33
HMGN1-217ENST00000489072 ROCK2O75116 1388 aaKnown RBP35.85■■■■□ 3.33
HMGN1-217ENST00000489072 CDK12Q9NYV4 1490 aaPredicted RBP35.85■■■■□ 3.33
HMGN1-217ENST00000489072 CABLES1Q8TDN4 633 aa35.84■■■■□ 3.33
HMGN1-217ENST00000489072 PLEKHG5O94827 1062 aa35.81■■■■□ 3.32
HMGN1-217ENST00000489072 RBM6P78332 1123 aaKnown RBP35.81■■■■□ 3.32
HMGN1-217ENST00000489072 BCL9LQ86UU0 1499 aa35.8■■■■□ 3.32
HMGN1-217ENST00000489072 TONSLQ96HA7 1378 aa35.79■■■■□ 3.32
HMGN1-217ENST00000489072 ATRNO75882 1429 aa35.79■■■■□ 3.32
HMGN1-217ENST00000489072 CCDC61Q9Y6R9 512 aa35.78■■■■□ 3.32
HMGN1-217ENST00000489072 TRPC5Q9UL62 973 aaPredicted RBP35.77■■■■□ 3.32
HMGN1-217ENST00000489072 RGS12O14924 1447 aa35.76■■■■□ 3.32
HMGN1-217ENST00000489072 HAP1P54257 671 aaPredicted RBP35.76■■■■□ 3.32
HMGN1-217ENST00000489072 POLR3AO14802 1390 aaPredicted RBP35.76■■■■□ 3.31
HMGN1-217ENST00000489072 SLIT2O94813 1529 aa35.75■■■■□ 3.31
HMGN1-217ENST00000489072 SRPK2P78362 688 aaKnown RBP35.75■■■■□ 3.31
HMGN1-217ENST00000489072 TNKS1BP1Q9C0C2 1729 aaKnown RBP35.74■■■■□ 3.31
HMGN1-217ENST00000489072 PLEKHG3A1L390 1219 aa35.74■■■■□ 3.31
HMGN1-217ENST00000489072 CABP2Q9NPB3 220 aa35.74■■■■□ 3.31
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms