RNA–Protein interactions for RNA: ENST00000455732.5

USP39-208, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-208ENST00000455732 DCAF11Q8TEB1 546 aa25.23■■□□□ 1.63
USP39-208ENST00000455732 WAPLQ7Z5K2 1190 aa25.22■■□□□ 1.63
USP39-208ENST00000455732 PLEKHH1Q9ULM0 1364 aa25.21■■□□□ 1.63
USP39-208ENST00000455732 ADGRB1O14514 1584 aa25.2■■□□□ 1.62
USP39-208ENST00000455732 SIRT1Q96EB6 747 aa25.2■■□□□ 1.62
USP39-208ENST00000455732 RGS17Q9UGC6 210 aaPredicted RBP25.19■■□□□ 1.62
USP39-208ENST00000455732 KDM2AQ9Y2K7 1162 aa25.17■■□□□ 1.62
USP39-208ENST00000455732 DLC1Q96QB1 1528 aa25.16■■□□□ 1.62
USP39-208ENST00000455732 FMN2Q9NZ56 1722 aa25.15■■□□□ 1.62
USP39-208ENST00000455732 DDX17Q92841 729 aaKnown RBP25.15■■□□□ 1.62
USP39-208ENST00000455732 ORAI2Q96SN7 254 aa25.15■■□□□ 1.62
USP39-208ENST00000455732 SPATA31A6Q5VVP1 1343 aa25.14■■□□□ 1.62
USP39-208ENST00000455732 LRP6O75581 1613 aa25.13■■□□□ 1.61
USP39-208ENST00000455732 LRRC59Q96AG4 307 aaKnown RBP25.1■■□□□ 1.61
USP39-208ENST00000455732 SIN3AQ96ST3 1273 aa25.1■■□□□ 1.61
USP39-208ENST00000455732 RGPD8O14715 1765 aaPredicted RBP25.1■■□□□ 1.61
USP39-208ENST00000455732 SOS2Q07890 1332 aaPredicted RBP25.09■■□□□ 1.61
USP39-208ENST00000455732 PRAM1Q96QH2 718 aa25.08■■□□□ 1.61
USP39-208ENST00000455732 KIAA1210Q9ULL0 1709 aa25.08■■□□□ 1.61
USP39-208ENST00000455732 POTEAQ6S8J7 498 aa25.07■■□□□ 1.6
USP39-208ENST00000455732 ESCO1Q5FWF5 840 aa25.06■■□□□ 1.6
USP39-208ENST00000455732 PNPLA6Q8IY17 1366 aa25.05■■□□□ 1.6
USP39-208ENST00000455732 L3MBTL2Q969R5 705 aa25.05■■□□□ 1.6
USP39-208ENST00000455732 ADGRB2O60241 1585 aa25.05■■□□□ 1.6
USP39-208ENST00000455732 ARHGEF28Q8N1W1 1705 aaKnown RBP25.04■■□□□ 1.6
USP39-208ENST00000455732 NUTM2FA1L443 756 aa25.04■■□□□ 1.6
USP39-208ENST00000455732 TRAK1Q9UPV9 953 aa25.04■■□□□ 1.6
USP39-208ENST00000455732 KIF1AQ12756 1690 aa25.03■■□□□ 1.6
USP39-208ENST00000455732 NEUROD1Q13562 356 aa25.02■■□□□ 1.6
USP39-208ENST00000455732 SAFB2Q14151 953 aaKnown RBP eCLIP25.02■■□□□ 1.6
USP39-208ENST00000455732 POGKQ9P215 609 aa25.02■■□□□ 1.6
USP39-208ENST00000455732 PXDNQ92626 1479 aa25.02■■□□□ 1.6
USP39-208ENST00000455732 NPHP3Q7Z494 1330 aa25.01■■□□□ 1.59
USP39-208ENST00000455732 MEX3CQ5U5Q3 659 aaKnown RBP25■■□□□ 1.59
USP39-208ENST00000455732 USP32Q8NFA0 1604 aa25■■□□□ 1.59
USP39-208ENST00000455732 COL22A1Q8NFW1 1626 aaPredicted RBP24.98■■□□□ 1.59
USP39-208ENST00000455732 NUTM2BA6NNL0 878 aaPredicted RBP24.98■■□□□ 1.59
USP39-208ENST00000455732 NUTM2EB1AL46 878 aaPredicted RBP24.98■■□□□ 1.59
USP39-208ENST00000455732 FOXO3O43524 673 aa24.98■■□□□ 1.59
USP39-208ENST00000455732 NUTM2AQ8IVF1 878 aaPredicted RBP24.98■■□□□ 1.59
USP39-208ENST00000455732 PCGF6Q9BYE7 350 aa24.95■■□□□ 1.58
USP39-208ENST00000455732 ANKARQ7Z5J8 1434 aa24.94■■□□□ 1.58
USP39-208ENST00000455732 NBPF1Q3BBV0 1214 aa24.93■■□□□ 1.58
USP39-208ENST00000455732 MINK1Q8N4C8 1332 aaPredicted RBP24.92■■□□□ 1.58
USP39-208ENST00000455732 XPCQ01831 940 aaPredicted RBP24.92■■□□□ 1.58
USP39-208ENST00000455732 HIRIP3Q9BW71 556 aaPredicted RBP24.92■■□□□ 1.58
USP39-208ENST00000455732 ZNF772Q68DY9 489 aaPredicted RBP24.91■■□□□ 1.58
USP39-208ENST00000455732 PHF8Q9UPP1 1060 aa24.91■■□□□ 1.58
USP39-208ENST00000455732 TONSLQ96HA7 1378 aa24.91■■□□□ 1.58
USP39-208ENST00000455732 TULP4Q9NRJ4 1543 aa24.9■■□□□ 1.58
USP39-208ENST00000455732 TRPM1Q7Z4N2 1603 aa24.9■■□□□ 1.58
USP39-208ENST00000455732 MARF1Q9Y4F3 1742 aaKnown RBP24.89■■□□□ 1.57
USP39-208ENST00000455732 WASLO00401 505 aaPredicted RBP24.88■■□□□ 1.57
USP39-208ENST00000455732 EIF3AQ14152 1382 aaKnown RBP24.87■■□□□ 1.57
USP39-208ENST00000455732 PRR36Q9H6K5 1346 aa24.86■■□□□ 1.57
USP39-208ENST00000455732 KRT28Q7Z3Y7 464 aa24.86■■□□□ 1.57
USP39-208ENST00000455732 AFF2P51816 1311 aa24.86■■□□□ 1.57
USP39-208ENST00000455732 SPATA31A3Q5VYP0 1347 aa24.86■■□□□ 1.57
USP39-208ENST00000455732 CLSPNQ9HAW4 1339 aa24.86■■□□□ 1.57
USP39-208ENST00000455732 ITSN1Q15811 1721 aa24.85■■□□□ 1.57
USP39-208ENST00000455732 ADAMTS2O95450 1211 aa24.84■■□□□ 1.57
USP39-208ENST00000455732 C8orf37Q96NL8 207 aa24.84■■□□□ 1.57
USP39-208ENST00000455732 ROCK2O75116 1388 aaKnown RBP24.83■■□□□ 1.57
USP39-208ENST00000455732 GPRASP1Q5JY77 1395 aa24.83■■□□□ 1.57
USP39-208ENST00000455732 NBPF8Q3BBV2 869 aa24.82■■□□□ 1.56
USP39-208ENST00000455732 PMFBP1Q8TBY8 1022 aa24.82■■□□□ 1.56
USP39-208ENST00000455732 TRPM3Q9HCF6 1732 aaPredicted RBP24.82■■□□□ 1.56
USP39-208ENST00000455732 ATP7BP35670 1465 aa24.82■■□□□ 1.56
USP39-208ENST00000455732 TNS3Q68CZ2 1445 aa24.81■■□□□ 1.56
USP39-208ENST00000455732 SBNO1A3KN83 1393 aa24.8■■□□□ 1.56
USP39-208ENST00000455732 QRICH2Q9H0J4 1663 aa24.79■■□□□ 1.56
USP39-208ENST00000455732 RALGAPBQ86X10 1494 aa24.79■■□□□ 1.56
USP39-208ENST00000455732 PSME1Q06323 249 aa24.79■■□□□ 1.56
USP39-208ENST00000455732 CENPJQ9HC77 1338 aaPredicted RBP24.79■■□□□ 1.56
USP39-208ENST00000455732 TOPAZ1Q8N9V7 1692 aa24.78■■□□□ 1.56
USP39-208ENST00000455732 NGLY1Q96IV0 654 aa24.78■■□□□ 1.56
USP39-208ENST00000455732 ALS2Q96Q42 1657 aa24.77■■□□□ 1.56
USP39-208ENST00000455732 ABCA3Q99758 1704 aa24.77■■□□□ 1.56
USP39-208ENST00000455732 CDK19Q9BWU1 502 aa24.76■■□□□ 1.55
USP39-208ENST00000455732 CDK12Q9NYV4 1490 aaPredicted RBP24.76■■□□□ 1.55
USP39-208ENST00000455732 RXRBP28702 533 aa24.75■■□□□ 1.55
USP39-208ENST00000455732 FNBP4Q8N3X1 1017 aaPredicted RBP24.75■■□□□ 1.55
USP39-208ENST00000455732 NUDT16Q96DE0 195 aaKnown RBP24.75■■□□□ 1.55
USP39-208ENST00000455732 ARHGEF10O15013 1369 aa24.72■■□□□ 1.55
USP39-208ENST00000455732 QTRT2Q9H974 415 aaKnown RBP24.72■■□□□ 1.55
USP39-208ENST00000455732 TIMELESSQ9UNS1 1208 aa24.71■■□□□ 1.55
USP39-208ENST00000455732 USP21Q9UK80 565 aa24.7■■□□□ 1.54
USP39-208ENST00000455732 TNKS1BP1Q9C0C2 1729 aaKnown RBP24.69■■□□□ 1.54
USP39-208ENST00000455732 NGDNQ8NEJ9 315 aaKnown RBP24.69■■□□□ 1.54
USP39-208ENST00000455732 CCDC61Q9Y6R9 512 aa24.69■■□□□ 1.54
USP39-208ENST00000455732 BCL9LQ86UU0 1499 aa24.69■■□□□ 1.54
USP39-208ENST00000455732 CABLES1Q8TDN4 633 aa24.68■■□□□ 1.54
USP39-208ENST00000455732 CARD11Q9BXL7 1154 aa24.68■■□□□ 1.54
USP39-208ENST00000455732 CRYBG1Q9Y4K1 1723 aa24.68■■□□□ 1.54
USP39-208ENST00000455732 POLR3AO14802 1390 aaPredicted RBP24.67■■□□□ 1.54
USP39-208ENST00000455732 RBM6P78332 1123 aaKnown RBP24.67■■□□□ 1.54
USP39-208ENST00000455732 LMOD2Q6P5Q4 547 aa24.67■■□□□ 1.54
USP39-208ENST00000455732 ATRNO75882 1429 aa24.67■■□□□ 1.54
USP39-208ENST00000455732 SBNO2Q9Y2G9 1366 aa24.66■■□□□ 1.54
USP39-208ENST00000455732 SLIT2O94813 1529 aa24.66■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 117.6 ms