RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 HMOX1P09601 288 aa14.93□□□□□ -0.02
MSH6-204ENST00000445503 WDR63Q8IWG1 891 aa14.93□□□□□ -0.02
MSH6-204ENST00000445503 TBC1D2Q9BYX2 928 aa14.92□□□□□ -0.02
MSH6-204ENST00000445503 C1orf115Q9H7X2 142 aa14.92□□□□□ -0.02
MSH6-204ENST00000445503 ZNF521Q96K83 1311 aa14.92□□□□□ -0.02
MSH6-204ENST00000445503 DUOX2Q9NRD8 1548 aa14.92□□□□□ -0.02
MSH6-204ENST00000445503 CDC42BPAQ5VT25 1732 aa14.92□□□□□ -0.02
MSH6-204ENST00000445503 SAMD9LQ8IVG5 1584 aa14.91□□□□□ -0.02
MSH6-204ENST00000445503 DIAPH1O60610 1272 aaKnown RBP14.91□□□□□ -0.02
MSH6-204ENST00000445503 TPRNQ4KMQ1 711 aa14.91□□□□□ -0.02
MSH6-204ENST00000445503 PNNQ9H307 717 aaKnown RBP14.91□□□□□ -0.02
MSH6-204ENST00000445503 ABCA8O94911 1581 aa14.91□□□□□ -0.02
MSH6-204ENST00000445503 SSH1Q8WYL5 1049 aa14.9□□□□□ -0.02
MSH6-204ENST00000445503 CHMP5Q9NZZ3 219 aa14.9□□□□□ -0.02
MSH6-204ENST00000445503 PLCH2O75038 1416 aa14.9□□□□□ -0.02
MSH6-204ENST00000445503 GOLGA6L22H0YM25 854 aa14.9□□□□□ -0.02
MSH6-204ENST00000445503 WDR7Q9Y4E6 1490 aa14.9□□□□□ -0.02
MSH6-204ENST00000445503 PIK3C2GO75747 1445 aa14.89□□□□□ -0.03
MSH6-204ENST00000445503 NOS1P29475 1434 aa14.89□□□□□ -0.03
MSH6-204ENST00000445503 ESF1Q9H501 851 aaKnown RBP14.89□□□□□ -0.03
MSH6-204ENST00000445503 POLR1AO95602 1720 aaPredicted RBP14.89□□□□□ -0.03
MSH6-204ENST00000445503 TMEM57Q8N5G2 664 aa14.88□□□□□ -0.03
MSH6-204ENST00000445503 FBLN1P23142 703 aa14.88□□□□□ -0.03
MSH6-204ENST00000445503 ATF7IPQ6VMQ6 1270 aa14.88□□□□□ -0.03
MSH6-204ENST00000445503 TMPOP42166 694 aaKnown RBP14.88□□□□□ -0.03
MSH6-204ENST00000445503 THUMPD2Q9BTF0 503 aaKnown RBP14.88□□□□□ -0.03
MSH6-204ENST00000445503 NUTM2FA1L443 756 aa14.87□□□□□ -0.03
MSH6-204ENST00000445503 TRAK2O60296 914 aa14.87□□□□□ -0.03
MSH6-204ENST00000445503 EIF2AK4Q9P2K8 1649 aaKnown RBP14.87□□□□□ -0.03
MSH6-204ENST00000445503 ARHGEF5Q12774 1597 aa14.87□□□□□ -0.03
MSH6-204ENST00000445503 TRIM27P14373 513 aa14.86□□□□□ -0.03
MSH6-204ENST00000445503 RAPGEF3O95398 923 aa14.86□□□□□ -0.03
MSH6-204ENST00000445503 TRMT2AQ8IZ69 625 aaKnown RBP14.86□□□□□ -0.03
MSH6-204ENST00000445503 PRAM1Q96QH2 718 aa14.86□□□□□ -0.03
MSH6-204ENST00000445503 PRKAR2BP31323 418 aa14.86□□□□□ -0.03
MSH6-204ENST00000445503 TBC1D32Q96NH3 1257 aa14.86□□□□□ -0.03
MSH6-204ENST00000445503 PLEKHG5O94827 1062 aa14.85□□□□□ -0.03
MSH6-204ENST00000445503 GBP4Q96PP9 640 aa14.85□□□□□ -0.03
MSH6-204ENST00000445503 NINLQ9Y2I6 1382 aa14.85□□□□□ -0.03
MSH6-204ENST00000445503 MCM4P33991 863 aa14.85□□□□□ -0.03
MSH6-204ENST00000445503 AAMPQ13685 434 aa14.85□□□□□ -0.03
MSH6-204ENST00000445503 TRPM1Q7Z4N2 1603 aa14.85□□□□□ -0.03
MSH6-204ENST00000445503 CROCC2H7BZ55 1655 aa14.84□□□□□ -0.03
MSH6-204ENST00000445503 INSRP06213 1382 aa14.84□□□□□ -0.03
MSH6-204ENST00000445503 PRDM15P57071 1507 aaPredicted RBP14.84□□□□□ -0.03
MSH6-204ENST00000445503 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.84□□□□□ -0.039e-9■■■■■ 31
MSH6-204ENST00000445503 CABP1Q9NZU7 370 aa14.83□□□□□ -0.03
MSH6-204ENST00000445503 CHMP4BQ9H444 224 aaKnown RBP14.83□□□□□ -0.04
MSH6-204ENST00000445503 C14orf93Q9H972 538 aaKnown RBP14.83□□□□□ -0.04
MSH6-204ENST00000445503 ADCY10Q96PN6 1610 aa14.82□□□□□ -0.04
MSH6-204ENST00000445503 POLR3AO14802 1390 aaPredicted RBP14.82□□□□□ -0.04
MSH6-204ENST00000445503 FOXD4L5Q5VV16 416 aaPredicted RBP14.82□□□□□ -0.04
MSH6-204ENST00000445503 FOXD4L4Q8WXT5 416 aaPredicted RBP14.82□□□□□ -0.04
MSH6-204ENST00000445503 KIF16BQ96L93 1317 aa14.82□□□□□ -0.04
MSH6-204ENST00000445503 TTC37Q6PGP7 1564 aa14.81□□□□□ -0.04
MSH6-204ENST00000445503 MAST1Q9Y2H9 1570 aa14.81□□□□□ -0.04
MSH6-204ENST00000445503 DDX11L8A8MPP1 907 aa14.81□□□□□ -0.04
MSH6-204ENST00000445503 ADGRL1O94910 1474 aa14.81□□□□□ -0.04
MSH6-204ENST00000445503 FAM43AQ8N2R8 423 aa14.8□□□□□ -0.04
MSH6-204ENST00000445503 RSPH6AQ9H0K4 717 aa14.8□□□□□ -0.04
MSH6-204ENST00000445503 FANCAO15360 1455 aa14.8□□□□□ -0.04
MSH6-204ENST00000445503 SLC4A10Q6U841 1118 aa14.8□□□□□ -0.04
MSH6-204ENST00000445503 CASC1Q6TDU7 716 aa14.79□□□□□ -0.04
MSH6-204ENST00000445503 NPC1L1Q9UHC9 1359 aa14.79□□□□□ -0.04
MSH6-204ENST00000445503 CALD1Q05682 793 aaKnown RBP14.78□□□□□ -0.04
MSH6-204ENST00000445503 NOL8Q76FK4 1167 aaKnown RBP14.78□□□□□ -0.04
MSH6-204ENST00000445503 ATP10AO60312 1499 aa14.78□□□□□ -0.04
MSH6-204ENST00000445503 CHD1LQ86WJ1 897 aa14.78□□□□□ -0.04
MSH6-204ENST00000445503 CDK19Q9BWU1 502 aa14.78□□□□□ -0.04
MSH6-204ENST00000445503 PANK2Q9BZ23 570 aa14.78□□□□□ -0.04
MSH6-204ENST00000445503 DDX49Q9Y6V7 483 aaKnown RBP14.77□□□□□ -0.04
MSH6-204ENST00000445503 IDI1Q13907 227 aa14.77□□□□□ -0.04
MSH6-204ENST00000445503 ZBTB7CA1YPR0 619 aa14.77□□□□□ -0.05
MSH6-204ENST00000445503 UGGT1Q9NYU2 1555 aa14.77□□□□□ -0.05
MSH6-204ENST00000445503 USP19O94966 1318 aa14.76□□□□□ -0.05
MSH6-204ENST00000445503 PREX2Q70Z35 1606 aa14.75□□□□□ -0.05
MSH6-204ENST00000445503 DCTN1Q14203 1278 aa14.75□□□□□ -0.05
MSH6-204ENST00000445503 CFAP65Q6ZU64 1925 aaKnown RBP14.75□□□□□ -0.05
MSH6-204ENST00000445503 WAPLQ7Z5K2 1190 aa14.74□□□□□ -0.05
MSH6-204ENST00000445503 C14orf37Q86TY3 774 aa14.74□□□□□ -0.05
MSH6-204ENST00000445503 FOXD4L6Q3SYB3 417 aaPredicted RBP14.74□□□□□ -0.05
MSH6-204ENST00000445503 FOXD4L3Q6VB84 417 aaPredicted RBP14.74□□□□□ -0.05
MSH6-204ENST00000445503 ERVK-7P63135 1459 aa14.74□□□□□ -0.05
MSH6-204ENST00000445503 ABCC2Q92887 1545 aa14.74□□□□□ -0.05
MSH6-204ENST00000445503 FYB1O15117 783 aa14.74□□□□□ -0.05
MSH6-204ENST00000445503 CT47B1P0C2W7 299 aaPredicted RBP14.74□□□□□ -0.05
MSH6-204ENST00000445503 TWISTNBQ3B726 338 aaPredicted RBP14.74□□□□□ -0.05
MSH6-204ENST00000445503 CDC42BPBQ9Y5S2 1711 aa14.73□□□□□ -0.05
MSH6-204ENST00000445503 XRCC6P12956 609 aaKnown RBP eCLIP14.73□□□□□ -0.052e-10■■□□□ 12.2
MSH6-204ENST00000445503 MRE11P49959 708 aa14.73□□□□□ -0.05
MSH6-204ENST00000445503 GLIPR1L2Q4G1C9 344 aa14.73□□□□□ -0.05
MSH6-204ENST00000445503 GNAI1P63096 354 aa14.73□□□□□ -0.05
MSH6-204ENST00000445503 COG3Q96JB2 828 aa14.73□□□□□ -0.05
MSH6-204ENST00000445503 PTPRTO14522 1441 aa14.73□□□□□ -0.05
MSH6-204ENST00000445503 RRS1Q15050 365 aaKnown RBP14.72□□□□□ -0.05
MSH6-204ENST00000445503 CCDC27Q2M243 656 aa14.72□□□□□ -0.05
MSH6-204ENST00000445503 ERCC6L2Q5T890 1561 aa14.71□□□□□ -0.05
MSH6-204ENST00000445503 RPGRIP1LQ68CZ1 1315 aa14.71□□□□□ -0.05
MSH6-204ENST00000445503 RBM42Q9BTD8 480 aaKnown RBP14.71□□□□□ -0.05
MSH6-204ENST00000445503 EMILIN1Q9Y6C2 1016 aa14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 105.4 ms