RNA–Protein interactions for RNA: LSR1

LSR1, Transcript of U2 spliceosomal RNA (U2 snRNA), component of the spliceosome, yeastyeast

Gene LSR1, Length 1,175 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
LSR1LSR1 YLR161WP0CE98 114 aa6.12□□□□□ -1.43
LSR1LSR1 YRA2P36036 203 aaKnown RBP RIP-Chip data6.12□□□□□ -1.43not detected
LSR1LSR1 YAL064WP39711 94 aa6.12□□□□□ -1.43
LSR1LSR1 YER187WP40102 141 aa6.12□□□□□ -1.43
LSR1LSR1 YLL066W-BQ8TGJ7 56 aa6.11□□□□□ -1.43
LSR1LSR1 UTP20P35194 2493 aaKnown RBP6.1□□□□□ -1.43
LSR1LSR1 UBC4P15731 148 aa6.1□□□□□ -1.43
LSR1LSR1 YLR281CQ05863 155 aa6.1□□□□□ -1.43
LSR1LSR1 YNL162W-AQ3E7A8 72 aa6.1□□□□□ -1.43
LSR1LSR1 DIF1O13577 133 aa6.09□□□□□ -1.43
LSR1LSR1 YFR009W-AP0C5M9 85 aa6.09□□□□□ -1.43
LSR1LSR1 SPC1P46965 94 aa6.09□□□□□ -1.43
LSR1LSR1 YER039C-AP0CD97 72 aa6.08□□□□□ -1.44
LSR1LSR1 FYV5P25585 152 aa6.08□□□□□ -1.44
LSR1LSR1 YCR050CP25630 102 aa6.08□□□□□ -1.44
LSR1LSR1 RPL38P49167 78 aaKnown RBP6.08□□□□□ -1.44
LSR1LSR1 SBH1P52870 82 aa6.08□□□□□ -1.44
LSR1LSR1 ATP20Q12233 115 aa6.08□□□□□ -1.44
LSR1LSR1 AIM4P38305 123 aaPredicted RBP6.07□□□□□ -1.44
LSR1LSR1 YOR314WQ12506 109 aa6.07□□□□□ -1.44
LSR1LSR1 RSM18P40033 138 aa6.06□□□□□ -1.44
LSR1LSR1 IGD1P43598 195 aa6.06□□□□□ -1.44
LSR1LSR1 EDC1P53080 175 aaPredicted RBP6.06□□□□□ -1.44
LSR1LSR1 STF1P01098 86 aa6.05□□□□□ -1.44
LSR1LSR1 RPL11AP0C0W9 174 aaKnown RBP6.05□□□□□ -1.44
LSR1LSR1 DYN1P36022 4092 aa6.04□□□□□ -1.44
LSR1LSR1 KTI11Q3E840 82 aa6.04□□□□□ -1.44
LSR1LSR1 YBR230W-AQ3E762 66 aa6.03□□□□□ -1.44
LSR1LSR1 YLR307C-AQ3E825 87 aa6.03□□□□□ -1.44
LSR1LSR1 YJL127C-BQ3E828 52 aa6.03□□□□□ -1.44
LSR1LSR1 AUA1P32450 94 aa6.02□□□□□ -1.45
LSR1LSR1 COX23P38824 151 aa6.02□□□□□ -1.45
LSR1LSR1 ICS3P47034 131 aa6.02□□□□□ -1.45
LSR1LSR1 YDR246W-AQ3E763 66 aa6.02□□□□□ -1.45
LSR1LSR1 RRT15Q3E811 62 aa6.02□□□□□ -1.45
LSR1LSR1 EDC2P40023 145 aaPredicted RBP6.01□□□□□ -1.45
LSR1LSR1 YDR182W-AQ3E796 67 aa6.01□□□□□ -1.45
LSR1LSR1 RTC6O14464 93 aa6□□□□□ -1.45
LSR1LSR1 BET1P22804 142 aa6□□□□□ -1.45
LSR1LSR1 YNL042W-BQ3E7Z2 85 aa6□□□□□ -1.45
LSR1LSR1 RPL11BQ3E757 174 aaPredicted RBP5.99□□□□□ -1.45
LSR1LSR1 YGL041C-BQ3E750 60 aa5.97□□□□□ -1.45
LSR1LSR1 Q0032Q9ZZX7 96 aa5.97□□□□□ -1.45
LSR1LSR1 RPL36BO14455 100 aaKnown RBP5.96□□□□□ -1.46
LSR1LSR1 RPL36AP05745 100 aaPredicted RBP5.96□□□□□ -1.46
LSR1LSR1 YBR121C-AP0C5L4 52 aa5.96□□□□□ -1.46
LSR1LSR1 YHR213W-BQ8TGK1 99 aa5.96□□□□□ -1.46
LSR1LSR1 YLR122CQ12312 125 aa5.95□□□□□ -1.46
LSR1LSR1 HOT13P36078 116 aa5.94□□□□□ -1.46
LSR1LSR1 NOP10Q6Q547 58 aaPredicted RBP5.94□□□□□ -1.46
LSR1LSR1 YAR023CD6VPM8 179 aa5.93□□□□□ -1.46
LSR1LSR1 SPT4P32914 102 aaPredicted RBP5.93□□□□□ -1.46
LSR1LSR1 YJL133C-AQ3E7A3 74 aa5.93□□□□□ -1.46
LSR1LSR1 YBR182C-AQ8TGU6 64 aa5.93□□□□□ -1.46
LSR1LSR1 YGR164WP53291 111 aa5.92□□□□□ -1.46
LSR1LSR1 YLR412C-AQ3E742 68 aa5.92□□□□□ -1.46
LSR1LSR1 RPS28BP0C0X0 67 aaKnown RBP5.9□□□□□ -1.46
LSR1LSR1 SNA2P56508 79 aa5.9□□□□□ -1.46
LSR1LSR1 YOL014WQ08110 124 aa5.9□□□□□ -1.46
LSR1LSR1 RPS28AQ3E7X9 67 aaPredicted RBP5.9□□□□□ -1.46
LSR1LSR1 TDA8Q6B2U8 126 aa5.89□□□□□ -1.47
LSR1LSR1 ECM19Q06011 112 aa5.87□□□□□ -1.47
LSR1LSR1 YOL166W-AQ8TGJ1 51 aa5.86□□□□□ -1.47
LSR1LSR1 KSH1Q8TGJ3 72 aa5.86□□□□□ -1.47
LSR1LSR1 PEX22P39718 180 aa5.85□□□□□ -1.47
LSR1LSR1 YGL193CP53097 103 aa5.85□□□□□ -1.47
LSR1LSR1 DDR2P89113 61 aa5.85□□□□□ -1.47
LSR1LSR1 YOR072WQ08486 104 aa5.85□□□□□ -1.47
LSR1LSR1 YHL005CP38752 130 aa5.83□□□□□ -1.48
LSR1LSR1 YIL102CP40488 101 aa5.83□□□□□ -1.48
LSR1LSR1 GIS2P53849 153 aaKnown RBP RIP-Chip data5.83□□□□□ -1.48not detected
LSR1LSR1 YLR162WQ06235 118 aa5.83□□□□□ -1.48
LSR1LSR1 LIP1Q03579 150 aa5.82□□□□□ -1.48
LSR1LSR1 YKL065W-AQ2V2P2 73 aa5.82□□□□□ -1.48
LSR1LSR1 YEL045CP32616 141 aa5.81□□□□□ -1.48
LSR1LSR1 BSC4P53841 131 aa5.8□□□□□ -1.48
LSR1LSR1 YHR007C-AQ07074 71 aa5.8□□□□□ -1.48
LSR1LSR1 MIC10Q96VH5 97 aa5.8□□□□□ -1.48
LSR1LSR1 RPS30AP0CX33 63 aaKnown RBP5.78□□□□□ -1.48
LSR1LSR1 RPS30BP0CX34 63 aaKnown RBP5.78□□□□□ -1.48
LSR1LSR1 YGR121W-AQ3E816 71 aa5.76□□□□□ -1.49
LSR1LSR1 YOL013W-AP0C272 63 aaPredicted RBP5.75□□□□□ -1.49
LSR1LSR1 YOR381W-AQ3E804 55 aa5.75□□□□□ -1.49
LSR1LSR1 YPR195CQ06594 109 aa5.74□□□□□ -1.49
LSR1LSR1 YJL197C-AP0C5P0 93 aa5.73□□□□□ -1.49
LSR1LSR1 YAR064WP39563 99 aa5.73□□□□□ -1.49
LSR1LSR1 HUB1Q6Q546 73 aa5.73□□□□□ -1.49
LSR1LSR1 YDR034C-AP0C289 58 aa5.71□□□□□ -1.5
LSR1LSR1 YMR230W-AQ3E7B5 62 aa5.7□□□□□ -1.5
LSR1LSR1 SDH6Q3E785 79 aa5.69□□□□□ -1.5
LSR1LSR1 YNL277W-AQ3E7Z0 62 aa5.69□□□□□ -1.5
LSR1LSR1 YMR122CQ03879 124 aa5.67□□□□□ -1.5
LSR1LSR1 YLR157W-DP0CE99 70 aa5.66□□□□□ -1.5
LSR1LSR1 SPG1P50088 95 aa5.66□□□□□ -1.5
LSR1LSR1 YHR125WP38831 101 aa5.65□□□□□ -1.5
LSR1LSR1 YOR268CQ08734 132 aa5.65□□□□□ -1.5
LSR1LSR1 OST5Q92316 86 aa5.65□□□□□ -1.5
LSR1LSR1 YOL097W-AQ3E7Y9 61 aa5.64□□□□□ -1.51
LSR1LSR1 YCR043CP25361 127 aa5.62□□□□□ -1.51
LSR1LSR1 YPR153WQ06537 140 aa5.62□□□□□ -1.51
Retrieved 100 of 5,963 RNA–protein pairs in 12.3 ms