RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), human

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-233	ENST00000531141	FAM227B	Q96M60	508 aa		4.55	□□□□□ -1.68
CD44-233	ENST00000531141	SELENOO	Q9BVL4	669 aa		4.55	□□□□□ -1.68
CD44-233	ENST00000531141	ARFGAP3	Q9NP61	516 aa		4.55	□□□□□ -1.68
CD44-233	ENST00000531141	VPS51	Q9UID3	782 aa		4.55	□□□□□ -1.68
CD44-233	ENST00000531141	USP22	Q9UPT9	525 aa		4.55	□□□□□ -1.68
CD44-233	ENST00000531141	INSL6	Q9Y581	213 aa		4.55	□□□□□ -1.68
CD44-233	ENST00000531141		H0YIZ8	118 aa		4.54	□□□□□ -1.68
CD44-233	ENST00000531141	KCNQ3	O43525	872 aa		4.54	□□□□□ -1.68
CD44-233	ENST00000531141	VNN1	O95497	513 aa		4.54	□□□□□ -1.68
CD44-233	ENST00000531141	ERBB2	P04626	1255 aa		4.54	□□□□□ -1.68
CD44-233	ENST00000531141	NPS	P0C0P6	89 aa		4.54	□□□□□ -1.68
CD44-233	ENST00000531141	JUP	P14923	745 aa		4.54	□□□□□ -1.68
CD44-233	ENST00000531141	WT1	P19544	449 aa	Predicted RBP	4.54	□□□□□ -1.68
CD44-233	ENST00000531141	EEF1G	P26641	437 aa	Known RBP	4.54	□□□□□ -1.68
CD44-233	ENST00000531141	MST1	P26927	711 aa		4.54	□□□□□ -1.68
CD44-233	ENST00000531141	TIRAP	P58753	221 aa		4.54	□□□□□ -1.68
CD44-233	ENST00000531141	RHBDL3	P58872	404 aa		4.54	□□□□□ -1.68
CD44-233	ENST00000531141	CLCA4	Q14CN2	919 aa		4.54	□□□□□ -1.68
CD44-233	ENST00000531141	AARS2	Q5JTZ9	985 aa	Known RBP	4.54	□□□□□ -1.68
CD44-233	ENST00000531141	MANEAL	Q5VSG8	457 aa		4.54	□□□□□ -1.68
CD44-233	ENST00000531141	MRNIP	Q6NTE8	343 aa		4.54	□□□□□ -1.68
CD44-233	ENST00000531141	CRTC1	Q6UUV9	634 aa		4.54	□□□□□ -1.68
CD44-233	ENST00000531141		Q6ZWC4	215 aa		4.54	□□□□□ -1.68
CD44-233	ENST00000531141	RAB11FIP4	Q86YS3	637 aa		4.54	□□□□□ -1.68
CD44-233	ENST00000531141	MBD3L2	Q8NHZ7	208 aa	Predicted RBP	4.54	□□□□□ -1.68
CD44-233	ENST00000531141	CYP2W1	Q8TAV3	490 aa		4.54	□□□□□ -1.68
CD44-233	ENST00000531141	KIAA1191	Q96A73	305 aa		4.54	□□□□□ -1.68
CD44-233	ENST00000531141	SARAF	Q96BY9	339 aa		4.54	□□□□□ -1.68
CD44-233	ENST00000531141	SLC39A13	Q96H72	371 aa		4.54	□□□□□ -1.68
CD44-233	ENST00000531141	FSD1L	Q9BXM9	530 aa		4.54	□□□□□ -1.68
CD44-233	ENST00000531141	SLC25A32	Q9H2D1	315 aa		4.54	□□□□□ -1.68
CD44-233	ENST00000531141	SYNPO2L	Q9H987	977 aa		4.54	□□□□□ -1.68
CD44-233	ENST00000531141	ZBTB26	Q9HCK0	441 aa		4.54	□□□□□ -1.68
CD44-233	ENST00000531141	DUSP22	Q9NRW4	184 aa		4.54	□□□□□ -1.68
CD44-233	ENST00000531141	SLC52A1	Q9NWF4	448 aa		4.54	□□□□□ -1.68
CD44-233	ENST00000531141	FNIP2	Q9P278	1114 aa		4.54	□□□□□ -1.68
CD44-233	ENST00000531141	RIMKLB	Q9ULI2	386 aa		4.54	□□□□□ -1.68
CD44-233	ENST00000531141	DRG1	Q9Y295	367 aa	Known RBP	4.54	□□□□□ -1.68
CD44-233	ENST00000531141	CEP83	Q9Y592	693 aa		4.54	□□□□□ -1.68
CD44-233	ENST00000531141	QSOX1	O00391	747 aa		4.53	□□□□□ -1.68
CD44-233	ENST00000531141	HNRNPDL	O14979	420 aa	Known RBP	4.53	□□□□□ -1.68
CD44-233	ENST00000531141	SNX2	O60749	519 aa		4.53	□□□□□ -1.68
CD44-233	ENST00000531141	ELFN1	P0C7U0	828 aa		4.53	□□□□□ -1.68
CD44-233	ENST00000531141	EGR1	P18146	543 aa		4.53	□□□□□ -1.68
CD44-233	ENST00000531141	GABRB3	P28472	473 aa		4.53	□□□□□ -1.68
CD44-233	ENST00000531141	CTGF	P29279	349 aa		4.53	□□□□□ -1.68
CD44-233	ENST00000531141	HSPA7	P48741	367 aa		4.53	□□□□□ -1.68
CD44-233	ENST00000531141	PDE1A	P54750	535 aa		4.53	□□□□□ -1.68
CD44-233	ENST00000531141	EEFSEC	P57772	596 aa	Known RBP	4.53	□□□□□ -1.68
CD44-233	ENST00000531141	SUMO2	P61956	95 aa	Known RBP	4.53	□□□□□ -1.68
CD44-233	ENST00000531141	GPS1	Q13098	491 aa		4.53	□□□□□ -1.68
CD44-233	ENST00000531141	CYP1B1	Q16678	543 aa		4.53	□□□□□ -1.68
CD44-233	ENST00000531141	LY6K	Q17RY6	165 aa		4.53	□□□□□ -1.68
CD44-233	ENST00000531141	MPEG1	Q2M385	716 aa		4.53	□□□□□ -1.68
CD44-233	ENST00000531141	SLC5A9	Q2M3M2	681 aa		4.53	□□□□□ -1.68
CD44-233	ENST00000531141	FAXC	Q5TGI0	409 aa		4.53	□□□□□ -1.68
CD44-233	ENST00000531141	FBXO38	Q6PIJ6	1188 aa		4.53	□□□□□ -1.68
CD44-233	ENST00000531141	PARS2	Q7L3T8	475 aa	Known RBP	4.53	□□□□□ -1.68
CD44-233	ENST00000531141	GPR150	Q8NGU9	434 aa		4.53	□□□□□ -1.68
CD44-233	ENST00000531141	ZNF566	Q969W8	418 aa		4.53	□□□□□ -1.68
CD44-233	ENST00000531141	SNX27	Q96L92	541 aa		4.53	□□□□□ -1.68
CD44-233	ENST00000531141	BBC3	Q96PG8	261 aa	Predicted RBP	4.53	□□□□□ -1.68
CD44-233	ENST00000531141	HIST1H2AA	Q96QV6	131 aa		4.53	□□□□□ -1.68
CD44-233	ENST00000531141	HAPLN3	Q96S86	360 aa		4.53	□□□□□ -1.68
CD44-233	ENST00000531141	MPHOSPH6	Q99547	160 aa	Known RBP	4.53	□□□□□ -1.68
CD44-233	ENST00000531141	TIMP4	Q99727	224 aa		4.53	□□□□□ -1.68
CD44-233	ENST00000531141	DPCD	Q9BVM2	203 aa	Predicted RBP	4.53	□□□□□ -1.68
CD44-233	ENST00000531141	STK33	Q9BYT3	514 aa		4.53	□□□□□ -1.68
CD44-233	ENST00000531141	TM7SF3	Q9NS93	570 aa		4.53	□□□□□ -1.68
CD44-233	ENST00000531141	DLL3	Q9NYJ7	618 aa		4.53	□□□□□ -1.68
CD44-233	ENST00000531141	CCNL1	Q9UK58	526 aa	Predicted RBP	4.53	□□□□□ -1.68
CD44-233	ENST00000531141	ADAMTS5	Q9UNA0	930 aa		4.53	□□□□□ -1.68
CD44-233	ENST00000531141	MAN2B2	Q9Y2E5	1009 aa		4.53	□□□□□ -1.68
CD44-233	ENST00000531141	PCDHGB2	Q9Y5G2	931 aa		4.53	□□□□□ -1.68
CD44-233	ENST00000531141	FAM234B	A2RU67	622 aa		4.52	□□□□□ -1.69
CD44-233	ENST00000531141		A8MVJ9	347 aa		4.52	□□□□□ -1.69
CD44-233	ENST00000531141	PODXL	O00592	558 aa		4.52	□□□□□ -1.69
CD44-233	ENST00000531141	KIAA0355	O15063	1070 aa		4.52	□□□□□ -1.69
CD44-233	ENST00000531141	SETSIP	P0DME0	302 aa		4.52	□□□□□ -1.69
CD44-233	ENST00000531141	CD19	P15391	556 aa		4.52	□□□□□ -1.69
CD44-233	ENST00000531141	ENG	P17813	658 aa		4.52	□□□□□ -1.69
CD44-233	ENST00000531141	ABCB4	P21439	1286 aa		4.52	□□□□□ -1.69
CD44-233	ENST00000531141	GPD1	P21695	349 aa		4.52	□□□□□ -1.69
CD44-233	ENST00000531141	ITPKB	P27987	946 aa		4.52	□□□□□ -1.69
CD44-233	ENST00000531141	SERPINB3	P29508	390 aa		4.52	□□□□□ -1.69
CD44-233	ENST00000531141	ATIC	P31939	592 aa		4.52	□□□□□ -1.69
CD44-233	ENST00000531141	GK	P32189	559 aa		4.52	□□□□□ -1.69
CD44-233	ENST00000531141	CYP2C18	P33260	490 aa		4.52	□□□□□ -1.69
CD44-233	ENST00000531141	GATM	P50440	423 aa		4.52	□□□□□ -1.69
CD44-233	ENST00000531141	INHBE	P58166	350 aa		4.52	□□□□□ -1.69
CD44-233	ENST00000531141	E2F1	Q01094	437 aa		4.52	□□□□□ -1.69
CD44-233	ENST00000531141	ST3GAL2	Q16842	350 aa		4.52	□□□□□ -1.69
CD44-233	ENST00000531141	AKNAD1	Q5T1N1	836 aa		4.52	□□□□□ -1.69
CD44-233	ENST00000531141	TSTD2	Q5T7W7	516 aa		4.52	□□□□□ -1.69
CD44-233	ENST00000531141	STRIP1	Q5VSL9	837 aa		4.52	□□□□□ -1.69
CD44-233	ENST00000531141	ARL6IP4	Q66PJ3	421 aa	Known RBP	4.52	□□□□□ -1.69
CD44-233	ENST00000531141	DENND2C	Q68D51	928 aa		4.52	□□□□□ -1.69
CD44-233	ENST00000531141	DPY19L3	Q6ZPD9	716 aa		4.52	□□□□□ -1.69
CD44-233	ENST00000531141	SLC29A4	Q7RTT9	530 aa		4.52	□□□□□ -1.69
CD44-233	ENST00000531141	CCDC28A	Q8IWP9	274 aa		4.52	□□□□□ -1.69

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