RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 GRIN2DO15399 1336 aa14.34□□□□□ -0.11
CCDC88A-211ENST00000471947 ADGRA2Q96PE1 1338 aa14.34□□□□□ -0.11
CCDC88A-211ENST00000471947 QSER1Q2KHR3 1735 aa14.34□□□□□ -0.11
CCDC88A-211ENST00000471947 SMIM28A0A1B0GU29 152 aa14.33□□□□□ -0.11
CCDC88A-211ENST00000471947 USP17L7P0C7H9 530 aa14.33□□□□□ -0.11
CCDC88A-211ENST00000471947 ABCD1P33897 745 aa14.33□□□□□ -0.11
CCDC88A-211ENST00000471947 PBX3P40426 434 aa14.33□□□□□ -0.11
CCDC88A-211ENST00000471947 ATN1P54259 1190 aaPredicted RBP14.33□□□□□ -0.11
CCDC88A-211ENST00000471947 VCPP55072 806 aaKnown RBP14.33□□□□□ -0.11
CCDC88A-211ENST00000471947 ARL4CP56559 192 aa14.33□□□□□ -0.11
CCDC88A-211ENST00000471947 ZNF572Q7Z3I7 529 aaPredicted RBP14.33□□□□□ -0.11
CCDC88A-211ENST00000471947 TTC30AQ86WT1 665 aa14.33□□□□□ -0.11
CCDC88A-211ENST00000471947 NSRP1Q9H0G5 558 aaKnown RBP14.33□□□□□ -0.11
CCDC88A-211ENST00000471947 SLC17A6Q9P2U8 582 aa14.33□□□□□ -0.11
CCDC88A-211ENST00000471947 CILPO75339 1184 aa14.33□□□□□ -0.12
CCDC88A-211ENST00000471947 MT-ND3P03897 115 aa14.33□□□□□ -0.12
CCDC88A-211ENST00000471947 CD52P31358 61 aa14.33□□□□□ -0.12
CCDC88A-211ENST00000471947 ELK3P41970 407 aa14.33□□□□□ -0.12
CCDC88A-211ENST00000471947 ATXN3LQ9H3M9 355 aa14.33□□□□□ -0.12
CCDC88A-211ENST00000471947 LRRC19Q9H756 370 aa14.33□□□□□ -0.12
CCDC88A-211ENST00000471947 KRT82Q9NSB4 513 aa14.33□□□□□ -0.12
CCDC88A-211ENST00000471947 IGKV6D-21A0A0A0MT36 114 aa14.33□□□□□ -0.12
CCDC88A-211ENST00000471947 TRPA1O75762 1119 aa14.33□□□□□ -0.12
CCDC88A-211ENST00000471947 ATP2A2P16615 1042 aaKnown RBP14.33□□□□□ -0.12
CCDC88A-211ENST00000471947 GRIA1P42261 906 aa14.33□□□□□ -0.12
CCDC88A-211ENST00000471947 SLC26A2P50443 739 aa14.33□□□□□ -0.12
CCDC88A-211ENST00000471947 PIGZQ86VD9 579 aa14.33□□□□□ -0.12
CCDC88A-211ENST00000471947 LRRC8CQ8TDW0 803 aa14.33□□□□□ -0.12
CCDC88A-211ENST00000471947 SNRNP25Q9BV90 132 aaKnown RBP14.33□□□□□ -0.12
CCDC88A-211ENST00000471947 DDX43Q9NXZ2 648 aaKnown RBP14.33□□□□□ -0.12
CCDC88A-211ENST00000471947 EPB41L3Q9Y2J2 1087 aaPredicted RBP14.33□□□□□ -0.12
CCDC88A-211ENST00000471947 APOL1O14791 398 aa14.32□□□□□ -0.12
CCDC88A-211ENST00000471947 STRNO43815 780 aa14.32□□□□□ -0.12
CCDC88A-211ENST00000471947 B4GALT4O60513 344 aa14.32□□□□□ -0.12
CCDC88A-211ENST00000471947 AP1G2O75843 785 aa14.32□□□□□ -0.12
CCDC88A-211ENST00000471947 TPH1P17752 444 aa14.32□□□□□ -0.12
CCDC88A-211ENST00000471947 HTRA3P83110 453 aa14.32□□□□□ -0.12
CCDC88A-211ENST00000471947 SNX17Q15036 470 aa14.32□□□□□ -0.12
CCDC88A-211ENST00000471947 SIX1Q15475 284 aaPredicted RBP14.32□□□□□ -0.12
CCDC88A-211ENST00000471947 LRIG3Q6UXM1 1119 aa14.32□□□□□ -0.12
CCDC88A-211ENST00000471947 ART4Q93070 314 aa14.32□□□□□ -0.12
CCDC88A-211ENST00000471947 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP14.32□□□□□ -0.12
CCDC88A-211ENST00000471947 KLHL8Q9P2G9 620 aaPredicted RBP14.32□□□□□ -0.12
CCDC88A-211ENST00000471947 NT5C1B-RDH14C9J2C7 533 aa14.32□□□□□ -0.12
CCDC88A-211ENST00000471947 CES2O00748 559 aa14.32□□□□□ -0.12
CCDC88A-211ENST00000471947 C2CD2LO14523 706 aa14.32□□□□□ -0.12
CCDC88A-211ENST00000471947 SPTLC1O15269 473 aa14.32□□□□□ -0.12
CCDC88A-211ENST00000471947 FLT3LGP49771 235 aa14.32□□□□□ -0.12
CCDC88A-211ENST00000471947 TAF6P49848 677 aa14.32□□□□□ -0.12
CCDC88A-211ENST00000471947 LMNB2Q03252 620 aa14.32□□□□□ -0.12
CCDC88A-211ENST00000471947 SOX4Q06945 474 aaPredicted RBP14.32□□□□□ -0.12
CCDC88A-211ENST00000471947 TADA2BQ86TJ2 420 aa14.32□□□□□ -0.12
CCDC88A-211ENST00000471947 KATNAL2Q8IYT4 538 aa14.32□□□□□ -0.12
CCDC88A-211ENST00000471947 FAM136AQ96C01 138 aa14.32□□□□□ -0.12
CCDC88A-211ENST00000471947 B3GALT6Q96L58 329 aa14.32□□□□□ -0.12
CCDC88A-211ENST00000471947 PEBP4Q96S96 227 aa14.32□□□□□ -0.12
CCDC88A-211ENST00000471947 DDIT4Q9NX09 232 aa14.32□□□□□ -0.12
CCDC88A-211ENST00000471947 CDY2AQ9Y6F7 541 aa14.32□□□□□ -0.12
CCDC88A-211ENST00000471947 KIAA1217Q5T5P2 1943 aa14.32□□□□□ -0.12
CCDC88A-211ENST00000471947 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP14.32□□□□□ -0.12
CCDC88A-211ENST00000471947 F8W810 466 aa14.32□□□□□ -0.12
CCDC88A-211ENST00000471947 H0YGN5 161 aa14.32□□□□□ -0.12
CCDC88A-211ENST00000471947 GOT1P17174 413 aa14.32□□□□□ -0.12
CCDC88A-211ENST00000471947 GMPRP36959 345 aa14.32□□□□□ -0.12
CCDC88A-211ENST00000471947 NBPF20Q3BBV1 942 aa14.32□□□□□ -0.12
CCDC88A-211ENST00000471947 ZNF792Q3KQV3 632 aa14.32□□□□□ -0.12
CCDC88A-211ENST00000471947 FNBP1LQ5T0N5 605 aa14.32□□□□□ -0.12
CCDC88A-211ENST00000471947 TP53INP2Q8IXH6 220 aa14.32□□□□□ -0.12
CCDC88A-211ENST00000471947 SLTMQ9NWH9 1034 aaKnown RBP eCLIP14.32□□□□□ -0.12
CCDC88A-211ENST00000471947 WDR3Q9UNX4 943 aaKnown RBP eCLIP14.32□□□□□ -0.12
CCDC88A-211ENST00000471947 FIS1Q9Y3D6 152 aa14.32□□□□□ -0.12
CCDC88A-211ENST00000471947 NFS1Q9Y697 457 aa14.32□□□□□ -0.12
CCDC88A-211ENST00000471947 SIGLEC16A6NMB1 481 aa14.31□□□□□ -0.12
CCDC88A-211ENST00000471947 GAS2O43903 313 aaKnown RBP14.31□□□□□ -0.12
CCDC88A-211ENST00000471947 FAM107AO95990 144 aa14.31□□□□□ -0.12
CCDC88A-211ENST00000471947 CDKN2BP42772 138 aa14.31□□□□□ -0.12
CCDC88A-211ENST00000471947 HEATR6Q6AI08 1181 aaKnown RBP14.31□□□□□ -0.12
CCDC88A-211ENST00000471947 APBB1IPQ7Z5R6 666 aaPredicted RBP14.31□□□□□ -0.12
CCDC88A-211ENST00000471947 UNC5BQ8IZJ1 945 aa14.31□□□□□ -0.12
CCDC88A-211ENST00000471947 ABI2Q9NYB9 513 aaPredicted RBP14.31□□□□□ -0.12
CCDC88A-211ENST00000471947 ST3GAL5Q9UNP4 418 aa14.31□□□□□ -0.12
CCDC88A-211ENST00000471947 AP4E1Q9UPM8 1137 aa14.31□□□□□ -0.12
CCDC88A-211ENST00000471947 CYP3A5P20815 502 aa14.31□□□□□ -0.12
CCDC88A-211ENST00000471947 BDNFP23560 247 aa14.31□□□□□ -0.12
CCDC88A-211ENST00000471947 GPD2P43304 727 aa14.31□□□□□ -0.12
CCDC88A-211ENST00000471947 TKTL1P51854 596 aa14.31□□□□□ -0.12
CCDC88A-211ENST00000471947 RCN2Q14257 317 aa14.31□□□□□ -0.12
CCDC88A-211ENST00000471947 MSS51Q4VC12 460 aa14.31□□□□□ -0.12
CCDC88A-211ENST00000471947 DCLK2Q8N568 766 aa14.31□□□□□ -0.12
CCDC88A-211ENST00000471947 MS4A4AQ96JQ5 239 aa14.31□□□□□ -0.12
CCDC88A-211ENST00000471947 PLCD4Q9BRC7 762 aa14.31□□□□□ -0.12
CCDC88A-211ENST00000471947 SHCBP1LQ9BZQ2 653 aa14.31□□□□□ -0.12
CCDC88A-211ENST00000471947 TRIM33Q9UPN9 1127 aa14.31□□□□□ -0.12
CCDC88A-211ENST00000471947 IPPQ9Y573 584 aa14.31□□□□□ -0.12
CCDC88A-211ENST00000471947 SDK1Q7Z5N4 2213 aa14.31□□□□□ -0.12
CCDC88A-211ENST00000471947 DFFAO00273 331 aa14.31□□□□□ -0.12
CCDC88A-211ENST00000471947 PAPSS1O43252 624 aaPredicted RBP14.31□□□□□ -0.12
CCDC88A-211ENST00000471947 CYP2F1P24903 491 aa14.31□□□□□ -0.12
CCDC88A-211ENST00000471947 PDE1BQ01064 536 aa14.31□□□□□ -0.12
CCDC88A-211ENST00000471947 MAP2K5Q13163 448 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms