RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 SUCLG2Q96I99 432 aa7.42□□□□□ -1.22
VPS53-204ENST00000437048 NUAK2Q9H093 628 aa7.42□□□□□ -1.22
VPS53-204ENST00000437048 PCDH9Q9HC56 1237 aa7.42□□□□□ -1.22
VPS53-204ENST00000437048 DAPK2Q9UIK4 370 aa7.42□□□□□ -1.22
VPS53-204ENST00000437048 ZNF451Q9Y4E5 1061 aa7.42□□□□□ -1.22
VPS53-204ENST00000437048 PCDHGA3Q9Y5H0 932 aa7.42□□□□□ -1.22
VPS53-204ENST00000437048 SRGAP2O75044 1071 aa7.42□□□□□ -1.22
VPS53-204ENST00000437048 S100GP29377 79 aa7.42□□□□□ -1.22
VPS53-204ENST00000437048 DRAP1Q14919 205 aaPredicted RBP7.42□□□□□ -1.22
VPS53-204ENST00000437048 FBXO42Q6P3S6 717 aa7.42□□□□□ -1.22
VPS53-204ENST00000437048 IZUMO2Q6UXV1 221 aa7.42□□□□□ -1.22
VPS53-204ENST00000437048 TMEM79Q9BSE2 394 aa7.42□□□□□ -1.22
VPS53-204ENST00000437048 ERVK-7P63135 1459 aa7.42□□□□□ -1.22
VPS53-204ENST00000437048 MBD5Q9P267 1494 aa7.42□□□□□ -1.22
VPS53-204ENST00000437048 SDR42E2A6NKP2 422 aa7.42□□□□□ -1.22
VPS53-204ENST00000437048 UNC5CO95185 931 aa7.42□□□□□ -1.22
VPS53-204ENST00000437048 ASNSP08243 561 aa7.42□□□□□ -1.22
VPS53-204ENST00000437048 NCAM1P13591 858 aa7.42□□□□□ -1.22
VPS53-204ENST00000437048 PTH1RQ03431 593 aa7.42□□□□□ -1.22
VPS53-204ENST00000437048 SCARA3Q6AZY7 606 aa7.42□□□□□ -1.22
VPS53-204ENST00000437048 GPD1LQ8N335 351 aa7.42□□□□□ -1.22
VPS53-204ENST00000437048 SLC38A7Q9NVC3 462 aa7.42□□□□□ -1.22
VPS53-204ENST00000437048 BTNL10A8MVZ5 291 aa7.42□□□□□ -1.22
VPS53-204ENST00000437048 DLGAP5Q15398 846 aa7.42□□□□□ -1.22
VPS53-204ENST00000437048 NAIF1Q69YI7 327 aaPredicted RBP7.42□□□□□ -1.22
VPS53-204ENST00000437048 DPP8Q6V1X1 898 aaPredicted RBP7.42□□□□□ -1.22
VPS53-204ENST00000437048 CAPN12Q6ZSI9 719 aa7.42□□□□□ -1.22
VPS53-204ENST00000437048 CLK4Q9HAZ1 481 aaKnown RBP7.42□□□□□ -1.22
VPS53-204ENST00000437048 CD320Q9NPF0 282 aa7.42□□□□□ -1.22
VPS53-204ENST00000437048 XPO7Q9UIA9 1087 aaKnown RBP7.42□□□□□ -1.22
VPS53-204ENST00000437048 TNPO3Q9Y5L0 923 aaKnown RBP7.42□□□□□ -1.22
VPS53-204ENST00000437048 CHP2O43745 196 aa7.42□□□□□ -1.22
VPS53-204ENST00000437048 ALDH18A1P54886 795 aaKnown RBP7.42□□□□□ -1.22
VPS53-204ENST00000437048 CCNG2Q16589 344 aa7.42□□□□□ -1.22
VPS53-204ENST00000437048 USP39Q53GS9 565 aaKnown RBP7.42□□□□□ -1.22
VPS53-204ENST00000437048 EEF2KMTQ96G04 330 aa7.42□□□□□ -1.22
VPS53-204ENST00000437048 TMEM8AQ9HCN3 771 aa7.42□□□□□ -1.22
VPS53-204ENST00000437048 BBIP1A8MTZ0 92 aa7.42□□□□□ -1.22
VPS53-204ENST00000437048 NUDT17P0C025 328 aa7.42□□□□□ -1.22
VPS53-204ENST00000437048 ENO3P13929 434 aaPredicted RBP7.42□□□□□ -1.22
VPS53-204ENST00000437048 SCNN1DP51172 638 aa7.42□□□□□ -1.22
VPS53-204ENST00000437048 PRELPP51888 382 aa7.42□□□□□ -1.22
VPS53-204ENST00000437048 LGALS3BPQ08380 585 aa7.42□□□□□ -1.22
VPS53-204ENST00000437048 ACAP2Q15057 778 aa7.42□□□□□ -1.22
VPS53-204ENST00000437048 DHRSXQ8N5I4 330 aa7.42□□□□□ -1.22
VPS53-204ENST00000437048 LRRC1Q9BTT6 524 aa7.42□□□□□ -1.22
VPS53-204ENST00000437048 ATP9AO75110 1047 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 OXCT1P55809 520 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 METTL21CQ5VZV1 264 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 COX4I2Q96KJ9 171 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 HEXIM2Q96MH2 286 aaKnown RBP7.41□□□□□ -1.22
VPS53-204ENST00000437048 CAND2O75155 1236 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 CYP1A1P04798 512 aaPredicted RBP7.41□□□□□ -1.22
VPS53-204ENST00000437048 ATXN8OSP0DMR3 200 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 OR6B2Q6IFH4 312 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 ZIM3Q96PE6 472 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 TCF7L2Q9NQB0 619 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 PALD1Q9ULE6 856 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 KPNA1P52294 538 aaPredicted RBP7.41□□□□□ -1.22
VPS53-204ENST00000437048 COASYQ13057 564 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 TRPV1Q8NER1 839 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 GPR101Q96P66 508 aaPredicted RBP7.41□□□□□ -1.22
VPS53-204ENST00000437048 EXOSC4Q9NPD3 245 aaKnown RBP7.41□□□□□ -1.22
VPS53-204ENST00000437048 PCDHGC5Q9Y5F6 944 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 GOLGA8SH3BPF8 625 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 ZNF18P17022 549 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 ARHGDIBP52566 201 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 ADAM28Q9UKQ2 775 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 ATP1A1P05023 1023 aaKnown RBP7.41□□□□□ -1.22
VPS53-204ENST00000437048 QARSP47897 775 aaKnown RBP7.41□□□□□ -1.22
VPS53-204ENST00000437048 FMO5P49326 533 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 ITGB3BPQ13352 177 aaPredicted RBP7.41□□□□□ -1.22
VPS53-204ENST00000437048 EFR3AQ14156 821 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 BHLHB9Q6PI77 547 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 NSMFQ6X4W1 530 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 SLC13A5Q86YT5 568 aaPredicted RBP7.41□□□□□ -1.22
VPS53-204ENST00000437048 MMTAG2Q9BU76 263 aaKnown RBP7.41□□□□□ -1.22
VPS53-204ENST00000437048 LRMDAQ9H2I8 198 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 OLA1Q9NTK5 396 aaKnown RBP7.41□□□□□ -1.22
VPS53-204ENST00000437048 TMEM9Q9P0T7 183 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 CAMSAP3Q9P1Y5 1249 aaPredicted RBP7.41□□□□□ -1.22
VPS53-204ENST00000437048 GNPATO15228 680 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 PLOD1Q02809 727 aaPredicted RBP7.41□□□□□ -1.22
VPS53-204ENST00000437048 SUPT20HL1Q3ZLR7 823 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 RFTN2Q52LD8 501 aaPredicted RBP7.41□□□□□ -1.22
VPS53-204ENST00000437048 CYB5RLQ6IPT4 315 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.41□□□□□ -1.22
VPS53-204ENST00000437048 CDK20Q8IZL9 346 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 METTL13Q8N6R0 699 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 PROCA1Q8NCQ7 364 aaPredicted RBP7.41□□□□□ -1.22
VPS53-204ENST00000437048 TSPAN14Q8NG11 270 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 PROX1Q92786 737 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 SLC39A8Q9C0K1 460 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 GIN1Q9NXP7 522 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 IGSF9BQ9UPX0 1349 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 AKAP8O43823 692 aaKnown RBP7.41□□□□□ -1.22
VPS53-204ENST00000437048 TLR2O60603 784 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 TPBGLP0DKB5 382 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 RFC5P40937 340 aa7.41□□□□□ -1.22
VPS53-204ENST00000437048 NUDT2P50583 147 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms