RNA–Protein interactions for RNA: ENST00000557529.1

SHMT2-233, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,369 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-233ENST00000557529 SYN3O14994 580 aa13.08□□□□□ -0.31
SHMT2-233ENST00000557529 B4GALT3O60512 393 aa13.08□□□□□ -0.31
SHMT2-233ENST00000557529 HSF2BPO75031 334 aa13.08□□□□□ -0.31
SHMT2-233ENST00000557529 TADA2AO75478 443 aa13.08□□□□□ -0.31
SHMT2-233ENST00000557529 GRAP2O75791 330 aa13.08□□□□□ -0.31
SHMT2-233ENST00000557529 ZMYND10O75800 440 aa13.08□□□□□ -0.31
SHMT2-233ENST00000557529 TJP3O95049 919 aa13.08□□□□□ -0.31
SHMT2-233ENST00000557529 ITGB1P05556 798 aa13.08□□□□□ -0.31
SHMT2-233ENST00000557529 GLI1P08151 1106 aa13.08□□□□□ -0.31
SHMT2-233ENST00000557529 CLTBP09497 229 aa13.08□□□□□ -0.31
SHMT2-233ENST00000557529 TCF4P15884 667 aa13.08□□□□□ -0.31
SHMT2-233ENST00000557529 MIPP30301 263 aa13.08□□□□□ -0.31
SHMT2-233ENST00000557529 MRPS25P82663 173 aaKnown RBP13.08□□□□□ -0.31
SHMT2-233ENST00000557529 ADIGQ0VDE8 80 aa13.08□□□□□ -0.31
SHMT2-233ENST00000557529 CUL1Q13616 776 aa13.08□□□□□ -0.31
SHMT2-233ENST00000557529 IKBKEQ14164 716 aa13.08□□□□□ -0.31
SHMT2-233ENST00000557529 SIX1Q15475 284 aaPredicted RBP13.08□□□□□ -0.31
SHMT2-233ENST00000557529 BEND6Q5SZJ8 279 aaPredicted RBP13.08□□□□□ -0.31
SHMT2-233ENST00000557529 CNKSR3Q6P9H4 555 aa13.08□□□□□ -0.31
SHMT2-233ENST00000557529 SPOCD1Q6ZMY3 1216 aa13.08□□□□□ -0.31
SHMT2-233ENST00000557529 CRIPAKQ8N1N5 446 aa13.08□□□□□ -0.31
SHMT2-233ENST00000557529 ARFGAP1Q8N6T3 406 aa13.08□□□□□ -0.31
SHMT2-233ENST00000557529 DIS3LQ8TF46 1054 aaKnown RBP13.08□□□□□ -0.31
SHMT2-233ENST00000557529 KHSRPQ92945 711 aaKnown RBP eCLIP13.08□□□□□ -0.31
SHMT2-233ENST00000557529 MYLPFQ96A32 169 aa13.08□□□□□ -0.31
SHMT2-233ENST00000557529 RNF25Q96BH1 459 aaPredicted RBP13.08□□□□□ -0.31
SHMT2-233ENST00000557529 PIWIL1Q96J94 861 aaKnown RBP13.08□□□□□ -0.31
SHMT2-233ENST00000557529 TMEM175Q9BSA9 504 aa13.08□□□□□ -0.31
SHMT2-233ENST00000557529 LRRC19Q9H756 370 aa13.08□□□□□ -0.31
SHMT2-233ENST00000557529 NRDE2Q9H7Z3 1164 aa13.08□□□□□ -0.31
SHMT2-233ENST00000557529 ZNF446Q9NWS9 450 aa13.08□□□□□ -0.31
SHMT2-233ENST00000557529 FEZ2Q9UHY8 353 aaPredicted RBP13.08□□□□□ -0.31
SHMT2-233ENST00000557529 USP18Q9UMW8 372 aa13.08□□□□□ -0.31
SHMT2-233ENST00000557529 EFR3BQ9Y2G0 817 aa13.08□□□□□ -0.31
SHMT2-233ENST00000557529 PRG3Q9Y2Y8 225 aaPredicted RBP13.08□□□□□ -0.31
SHMT2-233ENST00000557529 UTP11Q9Y3A2 253 aaKnown RBP13.08□□□□□ -0.31
SHMT2-233ENST00000557529 TCRBV7S2A1N4TA0A589 114 aa13.07□□□□□ -0.32
SHMT2-233ENST00000557529 LRRD1A4D1F6 860 aa13.07□□□□□ -0.32
SHMT2-233ENST00000557529 PRPSAP2O60256 369 aa13.07□□□□□ -0.32
SHMT2-233ENST00000557529 DAB1O75553 588 aa13.07□□□□□ -0.32
SHMT2-233ENST00000557529 SEC31AO94979 1220 aaKnown RBP13.07□□□□□ -0.32
SHMT2-233ENST00000557529 OAZ2O95190 189 aa13.07□□□□□ -0.32
SHMT2-233ENST00000557529 TRUB2O95900 331 aaKnown RBP13.07□□□□□ -0.32
SHMT2-233ENST00000557529 ALDH2P05091 517 aa13.07□□□□□ -0.32
SHMT2-233ENST00000557529 COILP38432 576 aaPredicted RBP13.07□□□□□ -0.32
SHMT2-233ENST00000557529 TKTL1P51854 596 aa13.07□□□□□ -0.32
SHMT2-233ENST00000557529 MAP3K7CLP57077 242 aa13.07□□□□□ -0.32
SHMT2-233ENST00000557529 MRPS5P82675 430 aaKnown RBP13.07□□□□□ -0.32
SHMT2-233ENST00000557529 ELAVL2Q12926 359 aaKnown RBP13.07□□□□□ -0.32
SHMT2-233ENST00000557529 KLF1Q13351 362 aaPredicted RBP13.07□□□□□ -0.32
SHMT2-233ENST00000557529 CCDC142Q17RM4 750 aa13.07□□□□□ -0.32
SHMT2-233ENST00000557529 TCTN1Q2MV58 587 aa13.07□□□□□ -0.32
SHMT2-233ENST00000557529 CCDC14Q49A88 953 aa13.07□□□□□ -0.32
SHMT2-233ENST00000557529 ATP13A4Q4VNC1 1196 aa13.07□□□□□ -0.32
SHMT2-233ENST00000557529 BOLA3Q53S33 107 aa13.07□□□□□ -0.32
SHMT2-233ENST00000557529 TFDP3Q5H9I0 405 aa13.07□□□□□ -0.32
SHMT2-233ENST00000557529 TRNP1Q6NT89 227 aa13.07□□□□□ -0.32
SHMT2-233ENST00000557529 CCDC137Q6PK04 289 aaKnown RBP13.07□□□□□ -0.32
SHMT2-233ENST00000557529 MFSD7Q6UXD7 560 aa13.07□□□□□ -0.32
SHMT2-233ENST00000557529 C4orf50Q6ZRC1 276 aa13.07□□□□□ -0.32
SHMT2-233ENST00000557529 HDXQ7Z353 690 aa13.07□□□□□ -0.32
SHMT2-233ENST00000557529 DEFB128Q7Z7B8 93 aa13.07□□□□□ -0.32
SHMT2-233ENST00000557529 DCP1BQ8IZD4 617 aaKnown RBP13.07□□□□□ -0.32
SHMT2-233ENST00000557529 ZDHHC14Q8IZN3 488 aa13.07□□□□□ -0.32
SHMT2-233ENST00000557529 CMASQ8NFW8 434 aaPredicted RBP13.07□□□□□ -0.32
SHMT2-233ENST00000557529 TBCBQ99426 244 aa13.07□□□□□ -0.32
SHMT2-233ENST00000557529 PKMYT1Q99640 499 aa13.07□□□□□ -0.32
SHMT2-233ENST00000557529 SMOQ99835 787 aa13.07□□□□□ -0.32
SHMT2-233ENST00000557529 DDX23Q9BUQ8 820 aaKnown RBP13.07□□□□□ -0.32
SHMT2-233ENST00000557529 ZWILCHQ9H900 591 aa13.07□□□□□ -0.32
SHMT2-233ENST00000557529 CSNK1G1Q9HCP0 422 aa13.07□□□□□ -0.32
SHMT2-233ENST00000557529 CNGB3Q9NQW8 809 aa13.07□□□□□ -0.32
SHMT2-233ENST00000557529 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.07□□□□□ -0.32
SHMT2-233ENST00000557529 DNAJB4Q9UDY4 337 aa13.07□□□□□ -0.32
SHMT2-233ENST00000557529 ADAM28Q9UKQ2 775 aa13.07□□□□□ -0.32
SHMT2-233ENST00000557529 TSC2P49815 1807 aa13.07□□□□□ -0.32
SHMT2-233ENST00000557529 hCG_1818297A0A087WSY0 165 aa13.07□□□□□ -0.32
SHMT2-233ENST00000557529 TBKBP1A7MCY6 615 aa13.07□□□□□ -0.32
SHMT2-233ENST00000557529 BHMG1C9JSJ3 638 aaPredicted RBP13.07□□□□□ -0.32
SHMT2-233ENST00000557529 PI4K2BG5E9Z4 385 aa13.07□□□□□ -0.32
SHMT2-233ENST00000557529 NRP1O14786 923 aa13.07□□□□□ -0.32
SHMT2-233ENST00000557529 TTI1O43156 1089 aa13.07□□□□□ -0.32
SHMT2-233ENST00000557529 BEST1O76090 585 aa13.07□□□□□ -0.32
SHMT2-233ENST00000557529 IL1R2P27930 398 aa13.07□□□□□ -0.32
SHMT2-233ENST00000557529 MATKP42679 507 aa13.07□□□□□ -0.32
SHMT2-233ENST00000557529 CDKN2BP42772 138 aa13.07□□□□□ -0.32
SHMT2-233ENST00000557529 CTCFP49711 727 aaPredicted RBP13.07□□□□□ -0.32
SHMT2-233ENST00000557529 EPHB4P54760 987 aa13.07□□□□□ -0.32
SHMT2-233ENST00000557529 YWHAZP63104 245 aaKnown RBP13.07□□□□□ -0.32
SHMT2-233ENST00000557529 ADCY1Q08828 1119 aa13.07□□□□□ -0.32
SHMT2-233ENST00000557529 TAF5Q15542 800 aa13.07□□□□□ -0.32
SHMT2-233ENST00000557529 CCNG2Q16589 344 aa13.07□□□□□ -0.32
SHMT2-233ENST00000557529 TXNRD3NBQ6F5E7 133 aa13.07□□□□□ -0.32
SHMT2-233ENST00000557529 EMBQ6PCB8 327 aa13.07□□□□□ -0.32
SHMT2-233ENST00000557529 JAMLQ86YT9 394 aa13.07□□□□□ -0.32
SHMT2-233ENST00000557529 CCDC105Q8IYK2 499 aa13.07□□□□□ -0.32
SHMT2-233ENST00000557529 LRRC43Q8N309 656 aa13.07□□□□□ -0.32
SHMT2-233ENST00000557529 KCTD6Q8NC69 237 aa13.07□□□□□ -0.32
SHMT2-233ENST00000557529 OR10T2Q8NGX3 314 aa13.07□□□□□ -0.32
SHMT2-233ENST00000557529 AENQ8WTP8 325 aaKnown RBP13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms