RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 ZNF543Q08ER8 600 aa5.85□□□□□ -1.47
CSDE1-202ENST00000339438 ARSHQ5FYA8 562 aa5.85□□□□□ -1.47
CSDE1-202ENST00000339438 PACS1Q6VY07 963 aa5.85□□□□□ -1.47
CSDE1-202ENST00000339438 KYAT3Q6YP21 454 aaKnown RBP5.85□□□□□ -1.47
CSDE1-202ENST00000339438 RFX8Q6ZV50 586 aa5.85□□□□□ -1.47
CSDE1-202ENST00000339438 KCNK18Q7Z418 384 aa5.85□□□□□ -1.47
CSDE1-202ENST00000339438 NANOGNBQ7Z5D8 188 aa5.85□□□□□ -1.47
CSDE1-202ENST00000339438 TICAM1Q8IUC6 712 aa5.85□□□□□ -1.47
CSDE1-202ENST00000339438 ARHGAP24Q8N264 748 aa5.85□□□□□ -1.47
CSDE1-202ENST00000339438 SAMD3Q8N6K7 520 aa5.85□□□□□ -1.47
CSDE1-202ENST00000339438 ACTRT2Q8TDY3 377 aa5.85□□□□□ -1.47
CSDE1-202ENST00000339438 LRRC19Q9H756 370 aa5.85□□□□□ -1.47
CSDE1-202ENST00000339438 S100A14Q9HCY8 104 aa5.85□□□□□ -1.47
CSDE1-202ENST00000339438 NPHS2Q9NP85 383 aa5.85□□□□□ -1.47
CSDE1-202ENST00000339438 ANGPTL2Q9UKU9 493 aa5.85□□□□□ -1.47
CSDE1-202ENST00000339438 PCDHA4Q9UN74 947 aa5.85□□□□□ -1.47
CSDE1-202ENST00000339438 SSX2IPQ9Y2D8 614 aa5.85□□□□□ -1.47
CSDE1-202ENST00000339438 A0A1W2PQ67 120 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 USP17L5A8MUK1 530 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 KRT38O76015 456 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 TFPTP0C1Z6 253 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 XBP1P17861 261 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 PEX2P28328 305 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 ATP5DP30049 168 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 TCF7P36402 384 aaPredicted RBP5.84□□□□□ -1.47
CSDE1-202ENST00000339438 PHKA2P46019 1235 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 CCT8P50990 548 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 HUNKP57058 714 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 XIAPP98170 497 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 NR1H3Q13133 447 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 CCNIQ14094 377 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 PKN2Q16513 984 aaKnown RBP5.84□□□□□ -1.47
CSDE1-202ENST00000339438 ZNF423Q2M1K9 1284 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 FAM209AQ5JX71 171 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 CES4AQ5XG92 561 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 DCDC5Q6ZRR9 648 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 DHDDSQ86SQ9 333 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 C14orf80Q86SX3 495 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 NOP9Q86U38 636 aaKnown RBP5.84□□□□□ -1.47
CSDE1-202ENST00000339438 CABP7Q86V35 215 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 TDRPQ86YL5 185 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 ULK2Q8IYT8 1036 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 CPSF7Q8N684 471 aaKnown RBP5.84□□□□□ -1.47
CSDE1-202ENST00000339438 RBM15BQ8NDT2 890 aaKnown RBP5.84□□□□□ -1.47
CSDE1-202ENST00000339438 SLC2A11Q9BYW1 496 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 KIAA1586Q9HCI6 787 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 SRRDQ9UH36 339 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 TBK1Q9UHD2 729 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 GIT1Q9Y2X7 761 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 HBS1LQ9Y450 684 aaKnown RBP5.84□□□□□ -1.47
CSDE1-202ENST00000339438 CTDP1Q9Y5B0 961 aaPredicted RBP5.84□□□□□ -1.47
CSDE1-202ENST00000339438 CFAP69A5D8W1 941 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 TRIM64BA6NI03 449 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 MATN2O00339 956 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 PEX1O43933 1283 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 CBFA2T3O75081 653 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 CDH16O75309 829 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 SPAG7O75391 227 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 PDE5AO76074 875 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 SORBS2O94875 1100 aaKnown RBP5.84□□□□□ -1.47
CSDE1-202ENST00000339438 NDUFB10O96000 172 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 TMEM253P0C7T8 217 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 RBP3P10745 1247 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 HOXD13P35453 343 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 KCNJ1P48048 391 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 ENTPD1P49961 510 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 SNAP25P60880 206 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 SPP2Q13103 211 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 MED21Q13503 144 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 LRRC41Q15345 812 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 EPHA7Q15375 998 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 CLEC16AQ2KHT3 1053 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 GRAMD4Q6IC98 578 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 USP17L2Q6R6M4 530 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 PATL1Q86TB9 770 aaKnown RBP5.84□□□□□ -1.47
CSDE1-202ENST00000339438 CPNE8Q86YQ8 564 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 ERI1Q8IV48 349 aaKnown RBP5.84□□□□□ -1.47
CSDE1-202ENST00000339438 SYT2Q8N9I0 419 aaPredicted RBP5.84□□□□□ -1.47
CSDE1-202ENST00000339438 DAGLBQ8NCG7 672 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 U2AF1L4Q8WU68 220 aaKnown RBP5.84□□□□□ -1.47
CSDE1-202ENST00000339438 RFFLQ8WZ73 363 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 GPKOWQ92917 476 aaPredicted RBP eCLIP5.84□□□□□ -1.471e-7■□□□□ 10.5
CSDE1-202ENST00000339438 AK8Q96MA6 479 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 TMEM47Q9BQJ4 181 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 HERPUD2Q9BSE4 406 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 RIC8AQ9NPQ8 531 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 TAS2R14Q9NYV8 317 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 TMOD2Q9NZR1 351 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 HEY2Q9UBP5 337 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 MTRF1LQ9UGC7 380 aaKnown RBP5.84□□□□□ -1.47
CSDE1-202ENST00000339438 LZTS1Q9Y250 596 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 TTLL3Q9Y4R7 772 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 MYOCOSA0A1B0GUC4 107 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 DCAF8L1A6NGE4 600 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 C2orf71A6NGG8 1288 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 E5RJQ4 531 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 LAD1O00515 517 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 CYP2C8P10632 490 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 SLC16A2P36021 539 aa5.84□□□□□ -1.47
CSDE1-202ENST00000339438 ASPHQ12797 758 aa5.84□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms