RNA–Protein interactions for RNA: ENST00000338850.5

RTN3-201, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 493 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-201ENST00000338850 ELF3P78545 371 aaPredicted RBP11.32□□□□□ -0.6
RTN3-201ENST00000338850 ZNF200P98182 395 aaPredicted RBP11.32□□□□□ -0.6
RTN3-201ENST00000338850 IL9RQ01113 521 aa11.32□□□□□ -0.6
RTN3-201ENST00000338850 ACAP1Q15027 740 aa11.32□□□□□ -0.6
RTN3-201ENST00000338850 LONRF1Q17RB8 773 aa11.32□□□□□ -0.6
RTN3-201ENST00000338850 TCTN1Q2MV58 587 aa11.32□□□□□ -0.6
RTN3-201ENST00000338850 TJAP1Q5JTD0 557 aa11.32□□□□□ -0.6
RTN3-201ENST00000338850 SWSAP1Q6NVH7 229 aa11.32□□□□□ -0.6
RTN3-201ENST00000338850 TRABD2AQ86V40 505 aa11.32□□□□□ -0.6
RTN3-201ENST00000338850 CPNE8Q86YQ8 564 aa11.32□□□□□ -0.6
RTN3-201ENST00000338850 TMEM35BQ8NCS4 154 aa11.32□□□□□ -0.6
RTN3-201ENST00000338850 DEPTORQ8TB45 409 aa11.32□□□□□ -0.6
RTN3-201ENST00000338850 DYDC1Q8WWB3 177 aa11.32□□□□□ -0.6
RTN3-201ENST00000338850 C11orf70Q9BRQ4 267 aa11.32□□□□□ -0.6
RTN3-201ENST00000338850 HERPUD2Q9BSE4 406 aa11.32□□□□□ -0.6
RTN3-201ENST00000338850 C16orf70Q9BSU1 422 aa11.32□□□□□ -0.6
RTN3-201ENST00000338850 NIF3L1Q9GZT8 377 aa11.32□□□□□ -0.6
RTN3-201ENST00000338850 LHX5Q9H2C1 402 aa11.32□□□□□ -0.6
RTN3-201ENST00000338850 APOBEC3GQ9HC16 384 aaKnown RBP11.32□□□□□ -0.6
RTN3-201ENST00000338850 ZNF302Q9NR11 478 aa11.32□□□□□ -0.6
RTN3-201ENST00000338850 WDR35Q9P2L0 1181 aa11.32□□□□□ -0.6
RTN3-201ENST00000338850 TPX2Q9ULW0 747 aaKnown RBP11.32□□□□□ -0.6
RTN3-201ENST00000338850 PCDHB4Q9Y5E5 795 aa11.32□□□□□ -0.6
RTN3-201ENST00000338850 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.31□□□□□ -0.6
RTN3-201ENST00000338850 hCG_1818297A0A087WSY0 165 aa11.31□□□□□ -0.6
RTN3-201ENST00000338850 E7ESA3 106 aa11.31□□□□□ -0.6
RTN3-201ENST00000338850 K7ERI5 159 aa11.31□□□□□ -0.6
RTN3-201ENST00000338850 FAM189A1O60320 539 aa11.31□□□□□ -0.6
RTN3-201ENST00000338850 ACSL3O95573 720 aa11.31□□□□□ -0.6
RTN3-201ENST00000338850 IL1BP01584 269 aa11.31□□□□□ -0.6
RTN3-201ENST00000338850 EZRP15311 586 aaKnown RBP11.31□□□□□ -0.6
RTN3-201ENST00000338850 HOXC8P31273 242 aa11.31□□□□□ -0.6
RTN3-201ENST00000338850 MAGEA4P43358 317 aa11.31□□□□□ -0.6
RTN3-201ENST00000338850 NCALDP61601 193 aa11.31□□□□□ -0.6
RTN3-201ENST00000338850 WDR5P61964 334 aaKnown RBP11.31□□□□□ -0.6
RTN3-201ENST00000338850 MBTPS1Q14703 1052 aa11.31□□□□□ -0.6
RTN3-201ENST00000338850 CCDC85BQ15834 202 aaPredicted RBP11.31□□□□□ -0.6
RTN3-201ENST00000338850 TFDP3Q5H9I0 405 aa11.31□□□□□ -0.6
RTN3-201ENST00000338850 EFHC2Q5JST6 749 aa11.31□□□□□ -0.6
RTN3-201ENST00000338850 FAM160B1Q5W0V3 765 aa11.31□□□□□ -0.6
RTN3-201ENST00000338850 CNKSR3Q6P9H4 555 aa11.31□□□□□ -0.6
RTN3-201ENST00000338850 CCDC25Q86WR0 208 aa11.31□□□□□ -0.6
RTN3-201ENST00000338850 VSIG1Q86XK7 387 aa11.31□□□□□ -0.6
RTN3-201ENST00000338850 SLC35B2Q8TB61 432 aa11.31□□□□□ -0.6
RTN3-201ENST00000338850 DENND1AQ8TEH3 1009 aa11.31□□□□□ -0.6
RTN3-201ENST00000338850 TCP11Q8WWU5 503 aa11.31□□□□□ -0.6
RTN3-201ENST00000338850 ZNF606Q8WXB4 792 aa11.31□□□□□ -0.6
RTN3-201ENST00000338850 SLC7A3Q8WY07 619 aa11.31□□□□□ -0.6
RTN3-201ENST00000338850 ALKBH8Q96BT7 664 aaKnown RBP11.31□□□□□ -0.6
RTN3-201ENST00000338850 MYCBPQ99417 103 aaPredicted RBP11.31□□□□□ -0.6
RTN3-201ENST00000338850 ELAC2Q9BQ52 826 aaKnown RBP11.31□□□□□ -0.6
RTN3-201ENST00000338850 MSTO1Q9BUK6 570 aa11.31□□□□□ -0.6
RTN3-201ENST00000338850 TRIM7Q9C029 511 aa11.31□□□□□ -0.6
RTN3-201ENST00000338850 CCDC113Q9H0I3 377 aa11.31□□□□□ -0.6
RTN3-201ENST00000338850 C2orf40Q9H1Z8 148 aa11.31□□□□□ -0.6
RTN3-201ENST00000338850 THEGQ9P2T0 379 aa11.31□□□□□ -0.6
RTN3-201ENST00000338850 NAALADL1Q9UQQ1 740 aa11.31□□□□□ -0.6
RTN3-201ENST00000338850 R3HDM2Q9Y2K5 976 aaKnown RBP11.31□□□□□ -0.6
RTN3-201ENST00000338850 EPOPA6NHQ4 379 aa11.3□□□□□ -0.6
RTN3-201ENST00000338850 H3BRB1 525 aa11.3□□□□□ -0.6
RTN3-201ENST00000338850 RFXAPO00287 272 aa11.3□□□□□ -0.6
RTN3-201ENST00000338850 MAFO75444 373 aaPredicted RBP11.3□□□□□ -0.6
RTN3-201ENST00000338850 TOM1L1O75674 476 aa11.3□□□□□ -0.6
RTN3-201ENST00000338850 ATP6V1G2O95670 118 aa11.3□□□□□ -0.6
RTN3-201ENST00000338850 ASMTLO95671 621 aa11.3□□□□□ -0.6
RTN3-201ENST00000338850 LGALS2P05162 132 aa11.3□□□□□ -0.6
RTN3-201ENST00000338850 KRT7P08729 469 aa11.3□□□□□ -0.6
RTN3-201ENST00000338850 NQO1P15559 274 aaKnown RBP11.3□□□□□ -0.6
RTN3-201ENST00000338850 POLR2BP30876 1174 aaKnown RBP11.3□□□□□ -0.6
RTN3-201ENST00000338850 STX2P32856 288 aa11.3□□□□□ -0.6
RTN3-201ENST00000338850 SLCO1A2P46721 670 aa11.3□□□□□ -0.6
RTN3-201ENST00000338850 YARSP54577 528 aaKnown RBP11.3□□□□□ -0.6
RTN3-201ENST00000338850 DEFB103AP81534 67 aa11.3□□□□□ -0.6
RTN3-201ENST00000338850 NCOA4Q13772 614 aa11.3□□□□□ -0.6
RTN3-201ENST00000338850 KYNUQ16719 465 aa11.3□□□□□ -0.6
RTN3-201ENST00000338850 SGSM1Q2NKQ1 1148 aa11.3□□□□□ -0.6
RTN3-201ENST00000338850 PARP6Q2NL67 630 aa11.3□□□□□ -0.6
RTN3-201ENST00000338850 UBAP2Q5T6F2 1119 aaKnown RBP11.3□□□□□ -0.6
RTN3-201ENST00000338850 ZNF618Q5T7W0 954 aa11.3□□□□□ -0.6
RTN3-201ENST00000338850 RNASEH2BQ5TBB1 312 aaKnown RBP11.3□□□□□ -0.6
RTN3-201ENST00000338850 IER5Q5VY09 327 aa11.3□□□□□ -0.6
RTN3-201ENST00000338850 TMEM270Q6UE05 265 aa11.3□□□□□ -0.6
RTN3-201ENST00000338850 METTL7BQ6UX53 244 aa11.3□□□□□ -0.6
RTN3-201ENST00000338850 SPOCD1Q6ZMY3 1216 aa11.3□□□□□ -0.6
RTN3-201ENST00000338850 CENPUQ71F23 418 aa11.3□□□□□ -0.6
RTN3-201ENST00000338850 ASRGL1Q7L266 308 aa11.3□□□□□ -0.6
RTN3-201ENST00000338850 SERINC5Q86VE9 423 aa11.3□□□□□ -0.6
RTN3-201ENST00000338850 THNSL1Q8IYQ7 743 aa11.3□□□□□ -0.6
RTN3-201ENST00000338850 ASAP3Q8TDY4 903 aa11.3□□□□□ -0.6
RTN3-201ENST00000338850 FBF1Q8TES7 1133 aa11.3□□□□□ -0.6
RTN3-201ENST00000338850 CPA5Q8WXQ8 436 aa11.3□□□□□ -0.6
RTN3-201ENST00000338850 ATG4AQ8WYN0 398 aa11.3□□□□□ -0.6
RTN3-201ENST00000338850 TGS1Q96RS0 853 aaKnown RBP11.3□□□□□ -0.6
RTN3-201ENST00000338850 RBM15Q96T37 977 aaKnown RBP eCLIP11.3□□□□□ -0.6
RTN3-201ENST00000338850 PI4K2AQ9BTU6 479 aa11.3□□□□□ -0.6
RTN3-201ENST00000338850 DHRS4Q9BTZ2 278 aa11.3□□□□□ -0.6
RTN3-201ENST00000338850 MRPL4Q9BYD3 311 aaKnown RBP11.3□□□□□ -0.6
RTN3-201ENST00000338850 FRMD8Q9BZ67 464 aaPredicted RBP11.3□□□□□ -0.6
RTN3-201ENST00000338850 TUT1Q9H6E5 874 aaKnown RBP11.3□□□□□ -0.6
RTN3-201ENST00000338850 CERS4Q9HA82 394 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms