RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 CCDC134Q9H6E4 229 aa11.87□□□□□ -0.51
USP53-201ENST00000274030 KBTBD4Q9NVX7 518 aa11.87□□□□□ -0.51
USP53-201ENST00000274030 CD163L1Q9NR16 1453 aa11.87□□□□□ -0.51
USP53-201ENST00000274030 F5H5T6 163 aa11.87□□□□□ -0.51
USP53-201ENST00000274030 ARHGEF9O43307 516 aa11.87□□□□□ -0.51
USP53-201ENST00000274030 HERVK_113P62684 666 aa11.87□□□□□ -0.51
USP53-201ENST00000274030 CDC16Q13042 620 aa11.87□□□□□ -0.51
USP53-201ENST00000274030 NBPF20Q3BBV1 942 aa11.87□□□□□ -0.51
USP53-201ENST00000274030 POTEAQ6S8J7 498 aa11.87□□□□□ -0.51
USP53-201ENST00000274030 H2AFY2Q9P0M6 372 aaPredicted RBP11.87□□□□□ -0.51
USP53-201ENST00000274030 CPS1P31327 1500 aa11.87□□□□□ -0.51
USP53-201ENST00000274030 C2orf81A6NN90 581 aa11.87□□□□□ -0.51
USP53-201ENST00000274030 GRIN3BO60391 1043 aa11.87□□□□□ -0.51
USP53-201ENST00000274030 DAB1O75553 588 aa11.87□□□□□ -0.51
USP53-201ENST00000274030 COPAP53621 1224 aa11.87□□□□□ -0.51
USP53-201ENST00000274030 SERPINB12Q96P63 405 aa11.87□□□□□ -0.51
USP53-201ENST00000274030 CAAP1Q9H8G2 361 aa11.87□□□□□ -0.51
USP53-201ENST00000274030 PPCSQ9HAB8 311 aa11.87□□□□□ -0.51
USP53-201ENST00000274030 TSPAN3O60637 253 aa11.86□□□□□ -0.51
USP53-201ENST00000274030 CYP2C8P10632 490 aa11.86□□□□□ -0.51
USP53-201ENST00000274030 IMPDH2P12268 514 aa11.86□□□□□ -0.51
USP53-201ENST00000274030 BMPR2Q13873 1038 aa11.86□□□□□ -0.51
USP53-201ENST00000274030 CCDC157Q569K6 752 aa11.86□□□□□ -0.51
USP53-201ENST00000274030 ARHGAP18Q8N392 663 aa11.86□□□□□ -0.51
USP53-201ENST00000274030 CERKQ8TCT0 537 aa11.86□□□□□ -0.51
USP53-201ENST00000274030 ZDHHC15Q96MV8 337 aa11.86□□□□□ -0.51
USP53-201ENST00000274030 SETD4Q9NVD3 440 aa11.86□□□□□ -0.51
USP53-201ENST00000274030 DMGDHQ9UI17 866 aaKnown RBP11.86□□□□□ -0.51
USP53-201ENST00000274030 USP18Q9UMW8 372 aa11.86□□□□□ -0.51
USP53-201ENST00000274030 NEXMIFQ5QGS0 1516 aa11.86□□□□□ -0.51
USP53-201ENST00000274030 FDFT1P37268 417 aa11.86□□□□□ -0.51
USP53-201ENST00000274030 GCLCP48506 637 aaPredicted RBP11.86□□□□□ -0.51
USP53-201ENST00000274030 MRPS15P82914 257 aaKnown RBP11.86□□□□□ -0.51
USP53-201ENST00000274030 SKOR1P84550 965 aa11.86□□□□□ -0.51
USP53-201ENST00000274030 DYNC1I2Q13409 638 aaKnown RBP11.86□□□□□ -0.51
USP53-201ENST00000274030 SDE2Q6IQ49 451 aa11.86□□□□□ -0.51
USP53-201ENST00000274030 LRRC8BQ6P9F7 803 aa11.86□□□□□ -0.51
USP53-201ENST00000274030 SV2AQ7L0J3 742 aa11.86□□□□□ -0.51
USP53-201ENST00000274030 OTOAQ7RTW8 1153 aa11.86□□□□□ -0.51
USP53-201ENST00000274030 RIBC1Q8N443 379 aaPredicted RBP11.86□□□□□ -0.51
USP53-201ENST00000274030 DIS3LQ8TF46 1054 aaKnown RBP11.86□□□□□ -0.51
USP53-201ENST00000274030 RXFP2Q8WXD0 754 aa11.86□□□□□ -0.51
USP53-201ENST00000274030 EDEM1Q92611 657 aa11.86□□□□□ -0.51
USP53-201ENST00000274030 CNBD2Q96M20 576 aa11.86□□□□□ -0.51
USP53-201ENST00000274030 COLEC11Q9BWP8 271 aa11.86□□□□□ -0.51
USP53-201ENST00000274030 RERGLQ9H628 205 aa11.86□□□□□ -0.51
USP53-201ENST00000274030 SLC40A1Q9NP59 571 aa11.86□□□□□ -0.51
USP53-201ENST00000274030 PXMP2Q9NR77 195 aa11.86□□□□□ -0.51
USP53-201ENST00000274030 UTP6Q9NYH9 597 aaKnown RBP11.86□□□□□ -0.51
USP53-201ENST00000274030 ARHGAP20Q9P2F6 1191 aa11.86□□□□□ -0.51
USP53-201ENST00000274030 CROCC2H7BZ55 1655 aa11.86□□□□□ -0.51
USP53-201ENST00000274030 C16orf96A6NNT2 1141 aa11.86□□□□□ -0.51
USP53-201ENST00000274030 FCGRTP55899 365 aa11.86□□□□□ -0.51
USP53-201ENST00000274030 HPCAP84074 193 aa11.86□□□□□ -0.51
USP53-201ENST00000274030 MAPRE1Q15691 268 aaKnown RBP11.86□□□□□ -0.51
USP53-201ENST00000274030 CTXN3Q4LDR2 81 aa11.86□□□□□ -0.51
USP53-201ENST00000274030 PLEKHH3Q7Z736 793 aa11.86□□□□□ -0.51
USP53-201ENST00000274030 VPS37AQ8NEZ2 397 aa11.86□□□□□ -0.51
USP53-201ENST00000274030 GTF3C2Q8WUA4 911 aaPredicted RBP11.86□□□□□ -0.51
USP53-201ENST00000274030 AKT1S1Q96B36 256 aa11.86□□□□□ -0.51
USP53-201ENST00000274030 CCT7Q99832 543 aa11.86□□□□□ -0.51
USP53-201ENST00000274030 AP4E1Q9UPM8 1137 aa11.86□□□□□ -0.51
USP53-201ENST00000274030 SLC12A8A0AV02 714 aa11.86□□□□□ -0.51
USP53-201ENST00000274030 F8VZ95 297 aa11.86□□□□□ -0.51
USP53-201ENST00000274030 VWA5AO00534 786 aa11.86□□□□□ -0.51
USP53-201ENST00000274030 GPR182O15218 404 aa11.86□□□□□ -0.51
USP53-201ENST00000274030 KDM1AO60341 852 aa11.86□□□□□ -0.51
USP53-201ENST00000274030 GEMP55040 296 aa11.86□□□□□ -0.51
USP53-201ENST00000274030 POLD3Q15054 466 aaPredicted RBP11.86□□□□□ -0.51
USP53-201ENST00000274030 AGAP9Q5VTM2 703 aa11.86□□□□□ -0.51
USP53-201ENST00000274030 MRNIPQ6NTE8 343 aa11.86□□□□□ -0.51
USP53-201ENST00000274030 P3H2Q8IVL5 708 aa11.86□□□□□ -0.51
USP53-201ENST00000274030 CELF6Q96J87 481 aaKnown RBP11.86□□□□□ -0.51
USP53-201ENST00000274030 SPATA16Q9BXB7 569 aa11.86□□□□□ -0.51
USP53-201ENST00000274030 SLC25A13Q9UJS0 675 aa11.86□□□□□ -0.51
USP53-201ENST00000274030 ABCA6Q8N139 1617 aa11.86□□□□□ -0.51
USP53-201ENST00000274030 SDR42E2A6NKP2 422 aa11.85□□□□□ -0.51
USP53-201ENST00000274030 LRRIQ3A6PVS8 624 aaPredicted RBP11.85□□□□□ -0.51
USP53-201ENST00000274030 SMAPO00193 183 aa11.85□□□□□ -0.51
USP53-201ENST00000274030 POMCP01189 267 aa11.85□□□□□ -0.51
USP53-201ENST00000274030 MUTP22033 750 aa11.85□□□□□ -0.51
USP53-201ENST00000274030 ACAT1P24752 427 aaKnown RBP11.85□□□□□ -0.51
USP53-201ENST00000274030 SERPINB10P48595 397 aa11.85□□□□□ -0.51
USP53-201ENST00000274030 EARS2Q5JPH6 523 aaKnown RBP11.85□□□□□ -0.51
USP53-201ENST00000274030 PLEKHM3Q6ZWE6 761 aa11.85□□□□□ -0.51
USP53-201ENST00000274030 PIF1Q9H611 641 aa11.85□□□□□ -0.51
USP53-201ENST00000274030 PTPRHQ9HD43 1115 aa11.85□□□□□ -0.51
USP53-201ENST00000274030 IQSEC2Q5JU85 1478 aa11.85□□□□□ -0.51
USP53-201ENST00000274030 SPHKAPQ2M3C7 1700 aa11.85□□□□□ -0.51
USP53-201ENST00000274030 CHD1O14646 1710 aa11.85□□□□□ -0.51
USP53-201ENST00000274030 EFCAB14O75071 495 aa11.85□□□□□ -0.51
USP53-201ENST00000274030 AKAP5P24588 427 aa11.85□□□□□ -0.51
USP53-201ENST00000274030 PRIM2P49643 509 aa11.85□□□□□ -0.51
USP53-201ENST00000274030 CLK1P49759 484 aaKnown RBP11.85□□□□□ -0.51
USP53-201ENST00000274030 GTF2A2P52657 109 aa11.85□□□□□ -0.51
USP53-201ENST00000274030 CYP24A1Q07973 514 aa11.85□□□□□ -0.51
USP53-201ENST00000274030 SLC9A5Q14940 896 aa11.85□□□□□ -0.51
USP53-201ENST00000274030 SEC23AQ15436 765 aa11.85□□□□□ -0.51
USP53-201ENST00000274030 DDI1Q8WTU0 396 aa11.85□□□□□ -0.51
USP53-201ENST00000274030 PPP1R2P1Q96PQ5 205 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms