RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 EPHB3P54753 998 aa19.28■□□□□ 0.68
LIG1-216ENST00000598938 DDR2Q16832 855 aa19.28■□□□□ 0.68
LIG1-216ENST00000598938 ATAT1Q5SQI0 421 aa19.28■□□□□ 0.68
LIG1-216ENST00000598938 PPP1R26Q5T8A7 1209 aaPredicted RBP19.28■□□□□ 0.68
LIG1-216ENST00000598938 ARHGAP17Q68EM7 881 aa19.28■□□□□ 0.68
LIG1-216ENST00000598938 SMARCD1Q96GM5 515 aa19.28■□□□□ 0.68
LIG1-216ENST00000598938 C8orf48Q96LL4 319 aa19.28■□□□□ 0.68
LIG1-216ENST00000598938 GPR88Q9GZN0 384 aa19.28■□□□□ 0.68
LIG1-216ENST00000598938 PIDD1Q9HB75 910 aa19.28■□□□□ 0.68
LIG1-216ENST00000598938 FAM207AQ9NSI2 230 aaPredicted RBP19.28■□□□□ 0.68
LIG1-216ENST00000598938 DNMT3BQ9UBC3 853 aaKnown RBP19.28■□□□□ 0.68
LIG1-216ENST00000598938 KIAA1257Q9ULG3 409 aa19.28■□□□□ 0.68
LIG1-216ENST00000598938 C2orf16Q68DN1 1984 aa19.27■□□□□ 0.68
LIG1-216ENST00000598938 PRR23AA6NEV1 266 aa19.27■□□□□ 0.68
LIG1-216ENST00000598938 PDGFBP01127 241 aaPredicted RBP19.27■□□□□ 0.68
LIG1-216ENST00000598938 VDRP11473 427 aa19.27■□□□□ 0.68
LIG1-216ENST00000598938 KRT5P13647 590 aa19.27■□□□□ 0.68
LIG1-216ENST00000598938 UBASH3AP57075 661 aa19.27■□□□□ 0.68
LIG1-216ENST00000598938 SGO2Q562F6 1265 aa19.27■□□□□ 0.68
LIG1-216ENST00000598938 GRASPQ7Z6J2 395 aaPredicted RBP19.27■□□□□ 0.68
LIG1-216ENST00000598938 GAS2L3Q86XJ1 694 aa19.27■□□□□ 0.68
LIG1-216ENST00000598938 SCN4BQ8IWT1 228 aa19.27■□□□□ 0.68
LIG1-216ENST00000598938 ELMOD1Q8N336 334 aa19.27■□□□□ 0.68
LIG1-216ENST00000598938 NEK11Q8NG66 645 aa19.27■□□□□ 0.68
LIG1-216ENST00000598938 PSMG2Q969U7 264 aa19.27■□□□□ 0.68
LIG1-216ENST00000598938 SPATA17Q96L03 361 aa19.27■□□□□ 0.68
LIG1-216ENST00000598938 CEP295NLQ96MC4 621 aa19.27■□□□□ 0.68
LIG1-216ENST00000598938 ZNF512Q96ME7 567 aaPredicted RBP19.27■□□□□ 0.68
LIG1-216ENST00000598938 PCMTD1Q96MG8 357 aaPredicted RBP19.27■□□□□ 0.68
LIG1-216ENST00000598938 RBSNQ9H1K0 784 aa19.27■□□□□ 0.68
LIG1-216ENST00000598938 POMKQ9H5K3 350 aa19.27■□□□□ 0.68
LIG1-216ENST00000598938 CSNK1G1Q9HCP0 422 aa19.27■□□□□ 0.68
LIG1-216ENST00000598938 HCFC1R1Q9NWW0 138 aa19.27■□□□□ 0.68
LIG1-216ENST00000598938 IFNKQ9P0W0 207 aa19.27■□□□□ 0.68
LIG1-216ENST00000598938 FOXN3O00409 490 aaPredicted RBP19.26■□□□□ 0.67
LIG1-216ENST00000598938 TRIM66O15016 1216 aa19.26■□□□□ 0.67
LIG1-216ENST00000598938 AP1G2O75843 785 aa19.26■□□□□ 0.67
LIG1-216ENST00000598938 CD19P15391 556 aa19.26■□□□□ 0.67
LIG1-216ENST00000598938 PTPN2P17706 415 aa19.26■□□□□ 0.67
LIG1-216ENST00000598938 ADORA2BP29275 332 aa19.26■□□□□ 0.67
LIG1-216ENST00000598938 GRIK1P39086 918 aa19.26■□□□□ 0.67
LIG1-216ENST00000598938 RAPGEF1Q13905 1077 aa19.26■□□□□ 0.67
LIG1-216ENST00000598938 DRAP1Q14919 205 aaPredicted RBP19.26■□□□□ 0.67
LIG1-216ENST00000598938 VEPH1Q14D04 833 aa19.26■□□□□ 0.67
LIG1-216ENST00000598938 SDHAF4Q5VUM1 108 aa19.26■□□□□ 0.67
LIG1-216ENST00000598938 ITIH5Q86UX2 942 aa19.26■□□□□ 0.67
LIG1-216ENST00000598938 FAM71AQ8IYT1 594 aa19.26■□□□□ 0.67
LIG1-216ENST00000598938 ZDHHC14Q8IZN3 488 aa19.26■□□□□ 0.67
LIG1-216ENST00000598938 GIPC2Q8TF65 315 aa19.26■□□□□ 0.67
LIG1-216ENST00000598938 SMOQ99835 787 aa19.26■□□□□ 0.67
LIG1-216ENST00000598938 STK33Q9BYT3 514 aa19.26■□□□□ 0.67
LIG1-216ENST00000598938 WDR6Q9NNW5 1121 aaKnown RBP19.26■□□□□ 0.67
LIG1-216ENST00000598938 AVENQ9NQS1 362 aaPredicted RBP19.26■□□□□ 0.67
LIG1-216ENST00000598938 KRT82Q9NSB4 513 aa19.26■□□□□ 0.67
LIG1-216ENST00000598938 USTQ9Y2C2 406 aa19.26■□□□□ 0.67
LIG1-216ENST00000598938 CLUHO75153 1309 aa19.25■□□□□ 0.67
LIG1-216ENST00000598938 C2CD4DB7Z1M9 353 aa19.25■□□□□ 0.67
LIG1-216ENST00000598938 F8VP50 259 aa19.25■□□□□ 0.67
LIG1-216ENST00000598938 O00370 1275 aa19.25■□□□□ 0.67
LIG1-216ENST00000598938 RHOP08100 348 aa19.25■□□□□ 0.67
LIG1-216ENST00000598938 FAM200BP0CF97 657 aa19.25■□□□□ 0.67
LIG1-216ENST00000598938 PBX1P40424 430 aa19.25■□□□□ 0.67
LIG1-216ENST00000598938 EPHA5P54756 1037 aa19.25■□□□□ 0.67
LIG1-216ENST00000598938 POLR2FP61218 127 aaKnown RBP19.25■□□□□ 0.67
LIG1-216ENST00000598938 NTHL1P78549 312 aa19.25■□□□□ 0.67
LIG1-216ENST00000598938 ASCL5Q7RTU5 278 aa19.25■□□□□ 0.67
LIG1-216ENST00000598938 DNAJB7Q7Z6W7 309 aaPredicted RBP19.25■□□□□ 0.67
LIG1-216ENST00000598938 TMC8Q8IU68 726 aa19.25■□□□□ 0.67
LIG1-216ENST00000598938 PLCD3Q8N3E9 789 aa19.25■□□□□ 0.67
LIG1-216ENST00000598938 TMEM105Q8N8V8 129 aa19.25■□□□□ 0.67
LIG1-216ENST00000598938 ZMIZ2Q8NF64 920 aa19.25■□□□□ 0.67
LIG1-216ENST00000598938 GPR152Q8TDT2 470 aa19.25■□□□□ 0.67
LIG1-216ENST00000598938 TFAP2BQ92481 460 aa19.25■□□□□ 0.67
LIG1-216ENST00000598938 ZSWIM1Q9BR11 485 aa19.25■□□□□ 0.67
LIG1-216ENST00000598938 CORO1BQ9BR76 489 aa19.25■□□□□ 0.67
LIG1-216ENST00000598938 LRRC3Q9BY71 257 aa19.25■□□□□ 0.67
LIG1-216ENST00000598938 DMAP1Q9NPF5 467 aaPredicted RBP19.25■□□□□ 0.67
LIG1-216ENST00000598938 SLC38A8A6NNN8 435 aa19.24■□□□□ 0.67
LIG1-216ENST00000598938 F8VZ95 297 aa19.24■□□□□ 0.67
LIG1-216ENST00000598938 BEST1O76090 585 aa19.24■□□□□ 0.67
LIG1-216ENST00000598938 CALCAP01258 141 aa19.24■□□□□ 0.67
LIG1-216ENST00000598938 PNMA6AP0CW24 399 aaPredicted RBP19.24■□□□□ 0.67
LIG1-216ENST00000598938 CSH1P0DML2 217 aa19.24■□□□□ 0.67
LIG1-216ENST00000598938 CSH2P0DML3 217 aa19.24■□□□□ 0.67
LIG1-216ENST00000598938 HMGA1P17096 107 aaKnown RBP19.24■□□□□ 0.67
LIG1-216ENST00000598938 SP100P23497 879 aaPredicted RBP19.24■□□□□ 0.67
LIG1-216ENST00000598938 BRD2P25440 801 aaKnown RBP19.24■□□□□ 0.67
LIG1-216ENST00000598938 ANXA13P27216 316 aa19.24■□□□□ 0.67
LIG1-216ENST00000598938 CLCN5P51795 746 aa19.24■□□□□ 0.67
LIG1-216ENST00000598938 JAM2P57087 298 aa19.24■□□□□ 0.67
LIG1-216ENST00000598938 STILQ15468 1287 aa19.24■□□□□ 0.67
LIG1-216ENST00000598938 PABPC1LQ4VXU2 614 aaKnown RBP19.24■□□□□ 0.67
LIG1-216ENST00000598938 ASTLQ6HA08 431 aaPredicted RBP19.24■□□□□ 0.67
LIG1-216ENST00000598938 CLEC20AQ6ZU45 233 aa19.24■□□□□ 0.67
LIG1-216ENST00000598938 ERMP1Q7Z2K6 904 aa19.24■□□□□ 0.67
LIG1-216ENST00000598938 HS6ST3Q8IZP7 471 aa19.24■□□□□ 0.67
LIG1-216ENST00000598938 TDRD5Q8NAT2 981 aaKnown RBP19.24■□□□□ 0.67
LIG1-216ENST00000598938 LEMD2Q8NC56 503 aa19.24■□□□□ 0.67
LIG1-216ENST00000598938 KCNK16Q96T55 309 aa19.24■□□□□ 0.67
LIG1-216ENST00000598938 DUSP16Q9BY84 665 aa19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms