RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 CLEC16AQ2KHT3 1053 aa9.89□□□□□ -0.83
DDX55-208ENST00000541259 PKDCCQ504Y2 493 aa9.89□□□□□ -0.83
DDX55-208ENST00000541259 SWT1Q5T5J6 900 aaKnown RBP9.89□□□□□ -0.83
DDX55-208ENST00000541259 SPATA31D4Q6ZUB0 917 aa9.89□□□□□ -0.83
DDX55-208ENST00000541259 FAM35AQ86V20 835 aa9.89□□□□□ -0.83
DDX55-208ENST00000541259 ZNF677Q86XU0 584 aa9.89□□□□□ -0.83
DDX55-208ENST00000541259 TTC9BQ8N6N2 239 aa9.89□□□□□ -0.83
DDX55-208ENST00000541259 MRPL43Q8N983 215 aaKnown RBP9.89□□□□□ -0.83
DDX55-208ENST00000541259 ATAD1Q8NBU5 361 aa9.89□□□□□ -0.83
DDX55-208ENST00000541259 MICAL1Q8TDZ2 1067 aa9.89□□□□□ -0.83
DDX55-208ENST00000541259 CPA5Q8WXQ8 436 aa9.89□□□□□ -0.83
DDX55-208ENST00000541259 SECISBP2LQ93073 1101 aaKnown RBP9.89□□□□□ -0.83
DDX55-208ENST00000541259 CCDC42Q96M95 316 aa9.89□□□□□ -0.83
DDX55-208ENST00000541259 SMOQ99835 787 aa9.89□□□□□ -0.83
DDX55-208ENST00000541259 PDCL3Q9H2J4 239 aa9.89□□□□□ -0.83
DDX55-208ENST00000541259 ZNF576Q9H609 170 aa9.89□□□□□ -0.83
DDX55-208ENST00000541259 ABI2Q9NYB9 513 aaPredicted RBP9.89□□□□□ -0.83
DDX55-208ENST00000541259 FNIP2Q9P278 1114 aa9.89□□□□□ -0.83
DDX55-208ENST00000541259 STK39Q9UEW8 545 aa9.89□□□□□ -0.83
DDX55-208ENST00000541259 NENFQ9UMX5 172 aa9.89□□□□□ -0.83
DDX55-208ENST00000541259 SLC27A5Q9Y2P5 690 aa9.89□□□□□ -0.83
DDX55-208ENST00000541259 DENND4CQ5VZ89 1909 aa9.88□□□□□ -0.83
DDX55-208ENST00000541259 AKR1B10O60218 316 aa9.88□□□□□ -0.83
DDX55-208ENST00000541259 AP1G2O75843 785 aa9.88□□□□□ -0.83
DDX55-208ENST00000541259 SOAT2O75908 522 aa9.88□□□□□ -0.83
DDX55-208ENST00000541259 ABLIM3O94929 683 aa9.88□□□□□ -0.83
DDX55-208ENST00000541259 UNGP13051 313 aaPredicted RBP9.88□□□□□ -0.83
DDX55-208ENST00000541259 GPD2P43304 727 aa9.88□□□□□ -0.83
DDX55-208ENST00000541259 GPR15P49685 360 aa9.88□□□□□ -0.83
DDX55-208ENST00000541259 RGS7P49802 495 aa9.88□□□□□ -0.83
DDX55-208ENST00000541259 MAP3K7CLP57077 242 aa9.88□□□□□ -0.83
DDX55-208ENST00000541259 NOMO3P69849 1222 aa9.88□□□□□ -0.83
DDX55-208ENST00000541259 PDE4CQ08493 712 aa9.88□□□□□ -0.83
DDX55-208ENST00000541259 ADCY1Q08828 1119 aa9.88□□□□□ -0.83
DDX55-208ENST00000541259 DUSP4Q13115 394 aa9.88□□□□□ -0.83
DDX55-208ENST00000541259 RAB33AQ14088 237 aa9.88□□□□□ -0.83
DDX55-208ENST00000541259 BMS1Q14692 1282 aaKnown RBP9.88□□□□□ -0.83
DDX55-208ENST00000541259 STILQ15468 1287 aa9.88□□□□□ -0.83
DDX55-208ENST00000541259 MAPRE1Q15691 268 aaKnown RBP9.88□□□□□ -0.83
DDX55-208ENST00000541259 C2CD6Q53TS8 623 aa9.88□□□□□ -0.83
DDX55-208ENST00000541259 PRPF38BQ5VTL8 546 aaKnown RBP9.88□□□□□ -0.83
DDX55-208ENST00000541259 NAA35Q5VZE5 725 aa9.88□□□□□ -0.83
DDX55-208ENST00000541259 CLEC20AQ6ZU45 233 aa9.88□□□□□ -0.83
DDX55-208ENST00000541259 TOGARAM2Q6ZUX3 1019 aa9.88□□□□□ -0.83
DDX55-208ENST00000541259 ADGRD2Q7Z7M1 963 aa9.88□□□□□ -0.83
DDX55-208ENST00000541259 SPATA2LQ8IUW3 424 aaPredicted RBP9.88□□□□□ -0.83
DDX55-208ENST00000541259 GPR65Q8IYL9 337 aa9.88□□□□□ -0.83
DDX55-208ENST00000541259 ANKRD52Q8NB46 1076 aa9.88□□□□□ -0.83
DDX55-208ENST00000541259 C1orf131Q8NDD1 294 aaKnown RBP9.88□□□□□ -0.83
DDX55-208ENST00000541259 ACRBPQ8NEB7 543 aa9.88□□□□□ -0.83
DDX55-208ENST00000541259 ZMIZ2Q8NF64 920 aa9.88□□□□□ -0.83
DDX55-208ENST00000541259 KCNK16Q96T55 309 aa9.88□□□□□ -0.83
DDX55-208ENST00000541259 DESI2Q9BSY9 194 aa9.88□□□□□ -0.83
DDX55-208ENST00000541259 DUSP16Q9BY84 665 aa9.88□□□□□ -0.83
DDX55-208ENST00000541259 OXCT2Q9BYC2 517 aaPredicted RBP9.88□□□□□ -0.83
DDX55-208ENST00000541259 DNAI2Q9GZS0 605 aa9.88□□□□□ -0.83
DDX55-208ENST00000541259 LHX5Q9H2C1 402 aa9.88□□□□□ -0.83
DDX55-208ENST00000541259 TTYH1Q9H313 450 aaPredicted RBP9.88□□□□□ -0.83
DDX55-208ENST00000541259 DEF6Q9H4E7 631 aa9.88□□□□□ -0.83
DDX55-208ENST00000541259 NGRNQ9NPE2 291 aaKnown RBP9.88□□□□□ -0.83
DDX55-208ENST00000541259 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP9.88□□□□□ -0.83
DDX55-208ENST00000541259 KRT82Q9NSB4 513 aa9.88□□□□□ -0.83
DDX55-208ENST00000541259 TJP2Q9UDY2 1190 aa9.88□□□□□ -0.83
DDX55-208ENST00000541259 TFR2Q9UP52 801 aa9.88□□□□□ -0.83
DDX55-208ENST00000541259 SSX2IPQ9Y2D8 614 aa9.88□□□□□ -0.83
DDX55-208ENST00000541259 REXO2Q9Y3B8 237 aaKnown RBP9.88□□□□□ -0.83
DDX55-208ENST00000541259 PCDHB5Q9Y5E4 795 aa9.88□□□□□ -0.83
DDX55-208ENST00000541259 IRAK3Q9Y616 596 aa9.88□□□□□ -0.83
DDX55-208ENST00000541259 EPN1Q9Y6I3 576 aaPredicted RBP9.88□□□□□ -0.83
DDX55-208ENST00000541259 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP9.88□□□□□ -0.83
DDX55-208ENST00000541259 ANAPC1Q9H1A4 1944 aa9.88□□□□□ -0.83
DDX55-208ENST00000541259 OBSL1O75147 1896 aa9.87□□□□□ -0.83
DDX55-208ENST00000541259 A0A0U1RQJ8 604 aa9.87□□□□□ -0.83
DDX55-208ENST00000541259 HHLA1C9JL84 531 aa9.87□□□□□ -0.83
DDX55-208ENST00000541259 PIK3R2O00459 728 aa9.87□□□□□ -0.83
DDX55-208ENST00000541259 PER2O15055 1255 aa9.87□□□□□ -0.83
DDX55-208ENST00000541259 TGM5O43548 720 aa9.87□□□□□ -0.83
DDX55-208ENST00000541259 HRO43593 1189 aa9.87□□□□□ -0.83
DDX55-208ENST00000541259 CLASP2O75122 1294 aaKnown RBP9.87□□□□□ -0.83
DDX55-208ENST00000541259 RNF40O75150 1001 aa9.87□□□□□ -0.83
DDX55-208ENST00000541259 NDUFA10O95299 355 aa9.87□□□□□ -0.83
DDX55-208ENST00000541259 FAM200BP0CF97 657 aa9.87□□□□□ -0.83
DDX55-208ENST00000541259 KLRC2P26717 231 aa9.87□□□□□ -0.83
DDX55-208ENST00000541259 CDH5P33151 784 aaPredicted RBP9.87□□□□□ -0.83
DDX55-208ENST00000541259 NDUFV1P49821 464 aa9.87□□□□□ -0.83
DDX55-208ENST00000541259 BST2Q10589 180 aaKnown RBP9.87□□□□□ -0.83
DDX55-208ENST00000541259 SLC18A3Q16572 532 aa9.87□□□□□ -0.83
DDX55-208ENST00000541259 NFE2Q16621 373 aaPredicted RBP9.87□□□□□ -0.83
DDX55-208ENST00000541259 DDR2Q16832 855 aa9.87□□□□□ -0.83
DDX55-208ENST00000541259 CCDC122Q5T0U0 273 aa9.87□□□□□ -0.83
DDX55-208ENST00000541259 SDHAF4Q5VUM1 108 aa9.87□□□□□ -0.83
DDX55-208ENST00000541259 ACAD10Q6JQN1 1059 aa9.87□□□□□ -0.83
DDX55-208ENST00000541259 PMF1Q6P1K2 205 aa9.87□□□□□ -0.83
DDX55-208ENST00000541259 ALKBH5Q6P6C2 394 aaKnown RBP9.87□□□□□ -0.83
DDX55-208ENST00000541259 LILRA6Q6PI73 481 aa9.87□□□□□ -0.83
DDX55-208ENST00000541259 C4orf50Q6ZRC1 276 aa9.87□□□□□ -0.83
DDX55-208ENST00000541259 PHLDB2Q86SQ0 1253 aa9.87□□□□□ -0.83
DDX55-208ENST00000541259 RBM23Q86U06 439 aaKnown RBP9.87□□□□□ -0.83
DDX55-208ENST00000541259 CCDC170Q8IYT3 715 aa9.87□□□□□ -0.83
DDX55-208ENST00000541259 STKLD1Q8NE28 680 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms