RNA–Protein interactions for RNA: ENST00000538570.5

COL4A6-208, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,528 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-208ENST00000538570 CYP27B1O15528 508 aa10.31□□□□□ -0.76
COL4A6-208ENST00000538570 RGS5O15539 181 aa10.31□□□□□ -0.76
COL4A6-208ENST00000538570 CLPTM1O96005 669 aa10.31□□□□□ -0.76
COL4A6-208ENST00000538570 FCHO2Q0JRZ9 810 aa10.31□□□□□ -0.76
COL4A6-208ENST00000538570 SMTNL2Q2TAL5 461 aa10.31□□□□□ -0.76
COL4A6-208ENST00000538570 FUT11Q495W5 492 aa10.31□□□□□ -0.76
COL4A6-208ENST00000538570 THUMPD3Q9BV44 507 aaKnown RBP10.31□□□□□ -0.76
COL4A6-208ENST00000538570 KATNAL1Q9BW62 490 aa10.31□□□□□ -0.76
COL4A6-208ENST00000538570 SLC38A7Q9NVC3 462 aa10.31□□□□□ -0.76
COL4A6-208ENST00000538570 NFKBIL1Q9UBC1 381 aaPredicted RBP10.31□□□□□ -0.76
COL4A6-208ENST00000538570 ALG6Q9Y672 507 aa10.31□□□□□ -0.76
COL4A6-208ENST00000538570 CDC42BPGQ6DT37 1551 aa10.31□□□□□ -0.76
COL4A6-208ENST00000538570 MYMKA6NI61 221 aa10.31□□□□□ -0.76
COL4A6-208ENST00000538570 RARBP10826 455 aa10.31□□□□□ -0.76
COL4A6-208ENST00000538570 FDFT1P37268 417 aa10.31□□□□□ -0.76
COL4A6-208ENST00000538570 RFC5P40937 340 aa10.31□□□□□ -0.76
COL4A6-208ENST00000538570 PRIM2P49643 509 aa10.31□□□□□ -0.76
COL4A6-208ENST00000538570 MKRN4PQ13434 485 aaPredicted RBP10.31□□□□□ -0.76
COL4A6-208ENST00000538570 EMC2Q15006 297 aa10.31□□□□□ -0.76
COL4A6-208ENST00000538570 C12orf60Q5U649 245 aa10.31□□□□□ -0.76
COL4A6-208ENST00000538570 CACHD1Q5VU97 1274 aa10.31□□□□□ -0.76
COL4A6-208ENST00000538570 RAD9BQ6WBX8 426 aa10.31□□□□□ -0.76
COL4A6-208ENST00000538570 TC2NQ8N9U0 490 aa10.31□□□□□ -0.76
COL4A6-208ENST00000538570 FAR2Q96K12 515 aa10.31□□□□□ -0.76
COL4A6-208ENST00000538570 ATAD3AQ9NVI7 634 aa10.31□□□□□ -0.76
COL4A6-208ENST00000538570 ATMINO43313 823 aaPredicted RBP10.31□□□□□ -0.76
COL4A6-208ENST00000538570 EXOSC10Q01780 885 aaKnown RBP10.31□□□□□ -0.76
COL4A6-208ENST00000538570 CNTN1Q12860 1018 aa10.31□□□□□ -0.76
COL4A6-208ENST00000538570 DCAF6Q58WW2 860 aa10.31□□□□□ -0.76
COL4A6-208ENST00000538570 AGAP9Q5VTM2 703 aa10.31□□□□□ -0.76
COL4A6-208ENST00000538570 GPAT2Q6NUI2 795 aa10.31□□□□□ -0.76
COL4A6-208ENST00000538570 RSPH1Q8WYR4 309 aa10.31□□□□□ -0.76
COL4A6-208ENST00000538570 GORASP1Q9BQQ3 440 aa10.31□□□□□ -0.76
COL4A6-208ENST00000538570 WWOXQ9NZC7 414 aa10.31□□□□□ -0.76
COL4A6-208ENST00000538570 FAM153AQ9UHL3 310 aa10.31□□□□□ -0.76
COL4A6-208ENST00000538570 SH3BP1Q9Y3L3 701 aa10.31□□□□□ -0.76
COL4A6-208ENST00000538570 RBP3P10745 1247 aa10.3□□□□□ -0.76
COL4A6-208ENST00000538570 ALDH6A1Q02252 535 aaKnown RBP10.3□□□□□ -0.76
COL4A6-208ENST00000538570 PRKCQQ04759 706 aa10.3□□□□□ -0.76
COL4A6-208ENST00000538570 KHDRBS1Q07666 443 aaKnown RBP eCLIP10.3□□□□□ -0.76
COL4A6-208ENST00000538570 DNAJC3Q13217 504 aa10.3□□□□□ -0.76
COL4A6-208ENST00000538570 TUBA3CQ13748 450 aa10.3□□□□□ -0.76
COL4A6-208ENST00000538570 ARID3BQ8IVW6 561 aaPredicted RBP10.3□□□□□ -0.76
COL4A6-208ENST00000538570 SYN2Q92777 582 aaPredicted RBP10.3□□□□□ -0.76
COL4A6-208ENST00000538570 SEPT5Q99719 369 aaPredicted RBP10.3□□□□□ -0.76
COL4A6-208ENST00000538570 TUBGCP4Q9UGJ1 667 aa10.3□□□□□ -0.76
COL4A6-208ENST00000538570 PHTF1Q9UMS5 762 aa10.3□□□□□ -0.76
COL4A6-208ENST00000538570 PDS5AQ29RF7 1337 aaKnown RBP10.3□□□□□ -0.76
COL4A6-208ENST00000538570 TRIM49D1C9J1S8 452 aa10.3□□□□□ -0.76
COL4A6-208ENST00000538570 GLRA3O75311 464 aa10.3□□□□□ -0.76
COL4A6-208ENST00000538570 MFN2O95140 757 aa10.3□□□□□ -0.76
COL4A6-208ENST00000538570 THRAP10827 490 aa10.3□□□□□ -0.76
COL4A6-208ENST00000538570 GTF2H1P32780 548 aa10.3□□□□□ -0.76
COL4A6-208ENST00000538570 ETFBP38117 255 aa10.3□□□□□ -0.76
COL4A6-208ENST00000538570 LAMC2Q13753 1193 aa10.3□□□□□ -0.76
COL4A6-208ENST00000538570 C11orf96Q7Z7L8 435 aa10.3□□□□□ -0.76
COL4A6-208ENST00000538570 CENPLQ8N0S6 344 aaPredicted RBP10.3□□□□□ -0.76
COL4A6-208ENST00000538570 C19orf60Q96EN9 201 aa10.3□□□□□ -0.76
COL4A6-208ENST00000538570 B3GALT6Q96L58 329 aa10.3□□□□□ -0.76
COL4A6-208ENST00000538570 ZNF512Q96ME7 567 aaPredicted RBP10.3□□□□□ -0.76
COL4A6-208ENST00000538570 KRT84Q9NSB2 600 aa10.3□□□□□ -0.76
COL4A6-208ENST00000538570 EXTL3O43909 919 aa10.3□□□□□ -0.76
COL4A6-208ENST00000538570 ANXA9O76027 345 aa10.3□□□□□ -0.76
COL4A6-208ENST00000538570 ALOX15P16050 662 aaPredicted RBP10.3□□□□□ -0.76
COL4A6-208ENST00000538570 PSMC3P17980 439 aa10.3□□□□□ -0.76
COL4A6-208ENST00000538570 ANXA11P50995 505 aaKnown RBP10.3□□□□□ -0.76
COL4A6-208ENST00000538570 TKFCQ3LXA3 575 aa10.3□□□□□ -0.76
COL4A6-208ENST00000538570 DCP1BQ8IZD4 617 aaKnown RBP10.3□□□□□ -0.76
COL4A6-208ENST00000538570 RIN3Q8TB24 985 aa10.3□□□□□ -0.76
COL4A6-208ENST00000538570 FUT8Q9BYC5 575 aa10.3□□□□□ -0.76
COL4A6-208ENST00000538570 S100A1P23297 94 aa10.3□□□□□ -0.76
COL4A6-208ENST00000538570 RRM2P31350 389 aa10.3□□□□□ -0.76
COL4A6-208ENST00000538570 PTGS2P35354 604 aa10.3□□□□□ -0.76
COL4A6-208ENST00000538570 HSD17B3P37058 310 aa10.3□□□□□ -0.76
COL4A6-208ENST00000538570 NUP62P37198 522 aaPredicted RBP10.3□□□□□ -0.76
COL4A6-208ENST00000538570 IL12RB1P42701 662 aa10.3□□□□□ -0.76
COL4A6-208ENST00000538570 CCT3P49368 545 aaKnown RBP10.3□□□□□ -0.76
COL4A6-208ENST00000538570 PWP1Q13610 501 aa10.3□□□□□ -0.76
COL4A6-208ENST00000538570 ARMC6Q6NXE6 501 aa10.3□□□□□ -0.76
COL4A6-208ENST00000538570 LRRC34Q8IZ02 419 aa10.3□□□□□ -0.76
COL4A6-208ENST00000538570 UBA3Q8TBC4 463 aa10.3□□□□□ -0.76
COL4A6-208ENST00000538570 MDM1Q8TC05 714 aa10.3□□□□□ -0.76
COL4A6-208ENST00000538570 GLMNQ92990 594 aa10.3□□□□□ -0.76
COL4A6-208ENST00000538570 FHDC1Q9C0D6 1143 aaPredicted RBP10.3□□□□□ -0.76
COL4A6-208ENST00000538570 RMND5AQ9H871 391 aa10.3□□□□□ -0.76
COL4A6-208ENST00000538570 DMAP1Q9NPF5 467 aaPredicted RBP10.3□□□□□ -0.76
COL4A6-208ENST00000538570 FAM49BQ9NUQ9 324 aa10.3□□□□□ -0.76
COL4A6-208ENST00000538570 TRMT6Q9UJA5 497 aaKnown RBP10.3□□□□□ -0.76
COL4A6-208ENST00000538570 MAGEB2O15479 319 aa10.3□□□□□ -0.76
COL4A6-208ENST00000538570 KCNJ1P48048 391 aa10.3□□□□□ -0.76
COL4A6-208ENST00000538570 ZNF543Q08ER8 600 aa10.3□□□□□ -0.76
COL4A6-208ENST00000538570 ATF7IP2Q5U623 682 aa10.3□□□□□ -0.76
COL4A6-208ENST00000538570 NMRK1Q9NWW6 199 aa10.3□□□□□ -0.76
COL4A6-208ENST00000538570 CRLS1Q9UJA2 301 aa10.3□□□□□ -0.76
COL4A6-208ENST00000538570 KPNA4O00629 521 aaPredicted RBP10.29□□□□□ -0.76
COL4A6-208ENST00000538570 EPB42P16452 691 aa10.29□□□□□ -0.76
COL4A6-208ENST00000538570 ZNF23P17027 643 aa10.29□□□□□ -0.76
COL4A6-208ENST00000538570 PCSK1P29120 753 aa10.29□□□□□ -0.76
COL4A6-208ENST00000538570 FNTAP49354 379 aa10.29□□□□□ -0.76
COL4A6-208ENST00000538570 TTLL9Q3SXZ7 439 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms