RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 CPB1P15086 417 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 PAX3P23760 479 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 CYP2F1P24903 491 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 PSMA2P25787 234 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 CA8P35219 290 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 GRIK1P39086 918 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 NDUFV1P49821 464 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 HADHBP55084 474 aaKnown RBP3.9□□□□□ -1.78
RTN4-208ENST00000404909 PLCB3Q01970 1234 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 ZNF268Q14587 947 aaPredicted RBP3.9□□□□□ -1.78
RTN4-208ENST00000404909 NAA30Q147X3 362 aaPredicted RBP3.9□□□□□ -1.78
RTN4-208ENST00000404909 CDO1Q16878 200 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 RTP2Q5QGT7 225 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 KCNT2Q6UVM3 1135 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 PRSS55Q6UWB4 352 aaPredicted RBP3.9□□□□□ -1.78
RTN4-208ENST00000404909 FAM43BQ6ZT52 329 aaPredicted RBP3.9□□□□□ -1.78
RTN4-208ENST00000404909 SCN4BQ8IWT1 228 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 SIX6OS1Q8N1H7 587 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 UBL4BQ8N7F7 174 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 GADD45GIP1Q8TAE8 222 aaPredicted RBP3.9□□□□□ -1.78
RTN4-208ENST00000404909 SMARCD1Q96GM5 515 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 TMEM169Q96HH4 297 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 HES6Q96HZ4 224 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 BUD13Q9BRD0 619 aaKnown RBP eCLIP3.9□□□□□ -1.787e-8■■□□□ 13.4
RTN4-208ENST00000404909 TTPALQ9BTX7 342 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 CWH43Q9H720 699 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 TMEM30AQ9NV96 361 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 WDR35Q9P2L0 1181 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 IP6K2Q9UHH9 426 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 CTAGE15A4D2H0 777 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 CCDC85CA6NKD9 419 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 PDE2AO00408 941 aaPredicted RBP3.9□□□□□ -1.78
RTN4-208ENST00000404909 XPO1O14980 1071 aaKnown RBP3.9□□□□□ -1.78
RTN4-208ENST00000404909 SYN3O14994 580 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 GABBR2O75899 941 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 BAIAP3O94812 1187 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 PROSCO94903 275 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 OAZ2O95190 189 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 CTAGE8P0CG41 777 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 PDGFRAP16234 1089 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 RPL17P18621 184 aaKnown RBP3.9□□□□□ -1.78
RTN4-208ENST00000404909 DNAJB2P25686 324 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 PAFAH1B1P43034 410 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 PLA2G4AP47712 749 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 GABRB2P47870 512 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 TKTL1P51854 596 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 ATP11AP98196 1134 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 OGDHQ02218 1023 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 TCEAL1Q15170 157 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 MAPRE1Q15691 268 aaKnown RBP3.9□□□□□ -1.78
RTN4-208ENST00000404909 WHAMMP3Q1A5X7 153 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 SMYD5Q6GMV2 418 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 ZNF280DQ6N043 979 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 ADAT2Q7Z6V5 191 aaKnown RBP3.9□□□□□ -1.78
RTN4-208ENST00000404909 TMEM110Q86TL2 294 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 CTAGE6Q86UF2 777 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 CREG2Q8IUH2 290 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 CTAGE4Q8IX94 777 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 ATAD1Q8NBU5 361 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 MYRIPQ8NFW9 859 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 RIN2Q8WYP3 895 aaPredicted RBP3.9□□□□□ -1.78
RTN4-208ENST00000404909 ALG3Q92685 438 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 IGSF21Q96ID5 467 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 CALR3Q96L12 384 aaKnown RBP3.9□□□□□ -1.78
RTN4-208ENST00000404909 SMOQ99835 787 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 LBHD1Q9BQE6 289 aaPredicted RBP3.9□□□□□ -1.78
RTN4-208ENST00000404909 TMEM175Q9BSA9 504 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 SLC4A5Q9BY07 1137 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 ABCB6Q9NP58 842 aa3.9□□□□□ -1.78
RTN4-208ENST00000404909 MRPL42Q9Y6G3 142 aaKnown RBP3.9□□□□□ -1.78
RTN4-208ENST00000404909 TCRBV5S1A1TA0A578 114 aa3.9□□□□□ -1.79
RTN4-208ENST00000404909 USP17L7P0C7H9 530 aa3.9□□□□□ -1.79
RTN4-208ENST00000404909 TCF4P15884 667 aa3.9□□□□□ -1.79
RTN4-208ENST00000404909 FLT3P36888 993 aa3.9□□□□□ -1.79
RTN4-208ENST00000404909 SLC1A1P43005 524 aa3.9□□□□□ -1.79
RTN4-208ENST00000404909 ACADSBP45954 432 aa3.9□□□□□ -1.79
RTN4-208ENST00000404909 SLC6A3Q01959 620 aa3.9□□□□□ -1.79
RTN4-208ENST00000404909 ELAVL2Q12926 359 aaKnown RBP3.9□□□□□ -1.79
RTN4-208ENST00000404909 TUBB2AQ13885 445 aa3.9□□□□□ -1.79
RTN4-208ENST00000404909 SMTNL2Q2TAL5 461 aa3.9□□□□□ -1.79
RTN4-208ENST00000404909 CFAP221Q4G0U5 840 aa3.9□□□□□ -1.79
RTN4-208ENST00000404909 ODF2Q5BJF6 829 aa3.9□□□□□ -1.79
RTN4-208ENST00000404909 TMEM240Q5SV17 173 aa3.9□□□□□ -1.79
RTN4-208ENST00000404909 PPP1R15BQ5SWA1 713 aa3.9□□□□□ -1.79
RTN4-208ENST00000404909 TEX35Q5T0J7 233 aa3.9□□□□□ -1.79
RTN4-208ENST00000404909 SDHAF4Q5VUM1 108 aa3.9□□□□□ -1.79
RTN4-208ENST00000404909 AADACL2Q6P093 401 aa3.9□□□□□ -1.79
RTN4-208ENST00000404909 CC2D1AQ6P1N0 951 aaPredicted RBP3.9□□□□□ -1.79
RTN4-208ENST00000404909 FAM171BQ6P995 826 aa3.9□□□□□ -1.79
RTN4-208ENST00000404909 OLFML1Q6UWY5 402 aa3.9□□□□□ -1.79
RTN4-208ENST00000404909 C4orf50Q6ZRC1 276 aa3.9□□□□□ -1.79
RTN4-208ENST00000404909 GPRIN1Q7Z2K8 1008 aa3.9□□□□□ -1.79
RTN4-208ENST00000404909 CCDC50Q8IVM0 306 aa3.9□□□□□ -1.79
RTN4-208ENST00000404909 DCP1BQ8IZD4 617 aaKnown RBP3.9□□□□□ -1.79
RTN4-208ENST00000404909 CEP112Q8N8E3 955 aa3.9□□□□□ -1.79
RTN4-208ENST00000404909 STKLD1Q8NE28 680 aa3.9□□□□□ -1.79
RTN4-208ENST00000404909 STK32AQ8WU08 396 aa3.9□□□□□ -1.79
RTN4-208ENST00000404909 ACSF2Q96CM8 615 aaPredicted RBP3.9□□□□□ -1.79
RTN4-208ENST00000404909 MCRS1Q96EZ8 462 aa3.9□□□□□ -1.79
RTN4-208ENST00000404909 HSFY1Q96LI6 401 aa3.9□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms