RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 TTF1Q15361 905 aaPredicted RBP5.28□□□□□ -1.56
CD44-239ENST00000639002 SUPT20HL1Q3ZLR7 823 aa5.28□□□□□ -1.56
CD44-239ENST00000639002 Q6ZWC4 215 aa5.28□□□□□ -1.56
CD44-239ENST00000639002 YTHDF3Q7Z739 585 aaKnown RBP5.28□□□□□ -1.56
CD44-239ENST00000639002 LRRC71Q8N4P6 559 aa5.28□□□□□ -1.56
CD44-239ENST00000639002 RP9Q8TA86 221 aaKnown RBP5.28□□□□□ -1.56
CD44-239ENST00000639002 LENG8Q96PV6 779 aaPredicted RBP5.28□□□□□ -1.56
CD44-239ENST00000639002 GABRQQ9UN88 632 aa5.28□□□□□ -1.56
CD44-239ENST00000639002 ADAMTS5Q9UNA0 930 aa5.28□□□□□ -1.56
CD44-239ENST00000639002 TMX2Q9Y320 296 aa5.28□□□□□ -1.56
CD44-239ENST00000639002 A0A087WWL8 130 aa5.27□□□□□ -1.57
CD44-239ENST00000639002 H3BML4 177 aa5.27□□□□□ -1.57
CD44-239ENST00000639002 PPP6CO00743 305 aa5.27□□□□□ -1.57
CD44-239ENST00000639002 AKAP10O43572 662 aa5.27□□□□□ -1.57
CD44-239ENST00000639002 PDE8BO95263 885 aa5.27□□□□□ -1.57
CD44-239ENST00000639002 THP07101 528 aa5.27□□□□□ -1.57
CD44-239ENST00000639002 HTR1BP28222 390 aa5.27□□□□□ -1.57
CD44-239ENST00000639002 CTGFP29279 349 aa5.27□□□□□ -1.57
CD44-239ENST00000639002 LY6KQ17RY6 165 aa5.27□□□□□ -1.57
CD44-239ENST00000639002 ZNF804AQ7Z570 1209 aa5.27□□□□□ -1.57
CD44-239ENST00000639002 TPH2Q8IWU9 490 aa5.27□□□□□ -1.57
CD44-239ENST00000639002 CYP2W1Q8TAV3 490 aa5.27□□□□□ -1.57
CD44-239ENST00000639002 SLC35G2Q8TBE7 412 aa5.27□□□□□ -1.57
CD44-239ENST00000639002 SOCS4Q8WXH5 440 aa5.27□□□□□ -1.57
CD44-239ENST00000639002 MOGAT1Q96PD6 335 aa5.27□□□□□ -1.57
CD44-239ENST00000639002 ACO2Q99798 780 aaKnown RBP5.27□□□□□ -1.57
CD44-239ENST00000639002 TRIM54Q9BYV2 358 aa5.27□□□□□ -1.57
CD44-239ENST00000639002 PNMA8BQ9ULN7 279 aaPredicted RBP5.27□□□□□ -1.57
CD44-239ENST00000639002 SHOC2Q9UQ13 582 aa5.27□□□□□ -1.57
CD44-239ENST00000639002 KCNA3P22001 575 aa5.26□□□□□ -1.57
CD44-239ENST00000639002 CERS1P27544 350 aa5.26□□□□□ -1.57
CD44-239ENST00000639002 LRPAP1P30533 357 aa5.26□□□□□ -1.57
CD44-239ENST00000639002 RAB27AP51159 221 aa5.26□□□□□ -1.57
CD44-239ENST00000639002 DGKEP52429 567 aa5.26□□□□□ -1.57
CD44-239ENST00000639002 CTBP1Q13363 440 aa5.26□□□□□ -1.57
CD44-239ENST00000639002 PIN1Q13526 163 aaPredicted RBP5.26□□□□□ -1.57
CD44-239ENST00000639002 DEPDC1Q5TB30 811 aa5.26□□□□□ -1.57
CD44-239ENST00000639002 SLC18B1Q6NT16 456 aa5.26□□□□□ -1.57
CD44-239ENST00000639002 CATSPERGQ6ZRH7 1159 aa5.26□□□□□ -1.57
CD44-239ENST00000639002 GAS2L3Q86XJ1 694 aa5.26□□□□□ -1.57
CD44-239ENST00000639002 DENND1CQ8IV53 801 aa5.26□□□□□ -1.57
CD44-239ENST00000639002 SLC15A4Q8N697 577 aa5.26□□□□□ -1.57
CD44-239ENST00000639002 DNAJC5GQ8N7S2 189 aa5.26□□□□□ -1.57
CD44-239ENST00000639002 C9orf106Q8NAJ2 232 aa5.26□□□□□ -1.57
CD44-239ENST00000639002 XAGE5Q8WWM1 108 aa5.26□□□□□ -1.57
CD44-239ENST00000639002 JPH3Q8WXH2 748 aaPredicted RBP5.26□□□□□ -1.57
CD44-239ENST00000639002 MTFMTQ96DP5 389 aaKnown RBP5.26□□□□□ -1.57
CD44-239ENST00000639002 RITA1Q96K30 269 aa5.26□□□□□ -1.57
CD44-239ENST00000639002 TAAR9Q96RI9 348 aa5.26□□□□□ -1.57
CD44-239ENST00000639002 DPH1Q9BZG8 443 aa5.26□□□□□ -1.57
CD44-239ENST00000639002 ZMAT3Q9HA38 289 aaKnown RBP5.26□□□□□ -1.57
CD44-239ENST00000639002 SMURF2Q9HAU4 748 aa5.26□□□□□ -1.57
CD44-239ENST00000639002 ATP6V0A4Q9HBG4 840 aa5.26□□□□□ -1.57
CD44-239ENST00000639002 ANLNQ9NQW6 1124 aa5.26□□□□□ -1.57
CD44-239ENST00000639002 TYW1Q9NV66 732 aaKnown RBP5.26□□□□□ -1.57
CD44-239ENST00000639002 PIH1D1Q9NWS0 290 aaKnown RBP5.26□□□□□ -1.57
CD44-239ENST00000639002 DDX56Q9NY93 547 aaKnown RBP5.26□□□□□ -1.57
CD44-239ENST00000639002 CAMSAP3Q9P1Y5 1249 aaPredicted RBP5.26□□□□□ -1.57
CD44-239ENST00000639002 VNN1O95497 513 aa5.25□□□□□ -1.57
CD44-239ENST00000639002 TUBB4AP04350 444 aa5.25□□□□□ -1.57
CD44-239ENST00000639002 PDGFRBP09619 1106 aa5.25□□□□□ -1.57
CD44-239ENST00000639002 CYP2C9P11712 490 aa5.25□□□□□ -1.57
CD44-239ENST00000639002 PDE6CP51160 858 aa5.25□□□□□ -1.57
CD44-239ENST00000639002 WNT3P56703 355 aa5.25□□□□□ -1.57
CD44-239ENST00000639002 ETFDHQ16134 617 aa5.25□□□□□ -1.57
CD44-239ENST00000639002 CYP1B1Q16678 543 aa5.25□□□□□ -1.57
CD44-239ENST00000639002 FCRL6Q6DN72 434 aa5.25□□□□□ -1.57
CD44-239ENST00000639002 EPM2AIP1Q7L775 607 aaPredicted RBP5.25□□□□□ -1.57
CD44-239ENST00000639002 ABRAQ8N0Z2 381 aa5.25□□□□□ -1.57
CD44-239ENST00000639002 C8orf58Q8NAV2 365 aa5.25□□□□□ -1.57
CD44-239ENST00000639002 AIFM3Q96NN9 605 aa5.25□□□□□ -1.57
CD44-239ENST00000639002 CAMKK2Q96RR4 588 aa5.25□□□□□ -1.57
CD44-239ENST00000639002 BHMT2Q9H2M3 363 aa5.25□□□□□ -1.57
CD44-239ENST00000639002 SNX14Q9Y5W7 946 aa5.25□□□□□ -1.57
CD44-239ENST00000639002 ANKRD62A6NC57 917 aa5.24□□□□□ -1.57
CD44-239ENST00000639002 TMEM233B4DJY2 109 aa5.24□□□□□ -1.57
CD44-239ENST00000639002 BTN3A1O00481 513 aa5.24□□□□□ -1.57
CD44-239ENST00000639002 NPSP0C0P6 89 aa5.24□□□□□ -1.57
CD44-239ENST00000639002 MYBP10242 640 aa5.24□□□□□ -1.57
CD44-239ENST00000639002 KITP10721 976 aa5.24□□□□□ -1.57
CD44-239ENST00000639002 IBSPP21815 317 aaPredicted RBP5.24□□□□□ -1.57
CD44-239ENST00000639002 AGFG1P52594 562 aaKnown RBP5.24□□□□□ -1.57
CD44-239ENST00000639002 PTCHD3Q3KNS1 767 aa5.24□□□□□ -1.57
CD44-239ENST00000639002 MORN5Q5VZ52 161 aa5.24□□□□□ -1.57
CD44-239ENST00000639002 SLC2A7Q6PXP3 512 aa5.24□□□□□ -1.57
CD44-239ENST00000639002 TRIM72Q6ZMU5 477 aa5.24□□□□□ -1.57
CD44-239ENST00000639002 SLC15A3Q8IY34 581 aa5.24□□□□□ -1.57
CD44-239ENST00000639002 PNLDC1Q8NA58 520 aaKnown RBP5.24□□□□□ -1.57
CD44-239ENST00000639002 KBTBD7Q8WVZ9 684 aa5.24□□□□□ -1.57
CD44-239ENST00000639002 RPL36ALQ969Q0 106 aaKnown RBP5.24□□□□□ -1.57
CD44-239ENST00000639002 LRGUKQ96M69 825 aa5.24□□□□□ -1.57
CD44-239ENST00000639002 ZNF48Q96MX3 618 aaPredicted RBP5.24□□□□□ -1.57
CD44-239ENST00000639002 ZNF180Q9UJW8 692 aa5.24□□□□□ -1.57
CD44-239ENST00000639002 SMIM35A0A1B0GVV1 85 aa5.23□□□□□ -1.57
CD44-239ENST00000639002 TCRBV5S1A1TA0A578 114 aa5.23□□□□□ -1.57
CD44-239ENST00000639002 KRTAP29-1A8MX34 341 aaPredicted RBP5.23□□□□□ -1.57
CD44-239ENST00000639002 MOSPD3O75425 235 aa5.23□□□□□ -1.57
CD44-239ENST00000639002 DAZAP2Q15038 168 aaPredicted RBP5.23□□□□□ -1.57
CD44-239ENST00000639002 TBC1D25Q3MII6 688 aa5.23□□□□□ -1.57
CD44-239ENST00000639002 RNASE12Q5GAN4 147 aaKnown RBP5.23□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms