RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 ZSWIM3Q96MP5 696 aa17.06■□□□□ 0.32
BRCA1-228ENST00000618469 ASB16Q96NS5 453 aa17.06■□□□□ 0.32
BRCA1-228ENST00000618469 ATXN3LQ9H3M9 355 aa17.06■□□□□ 0.32
BRCA1-228ENST00000618469 TMEM8AQ9HCN3 771 aa17.06■□□□□ 0.32
BRCA1-228ENST00000618469 DLGAP2Q9P1A6 1054 aa17.06■□□□□ 0.32
BRCA1-228ENST00000618469 ECI2O75521 394 aa17.05■□□□□ 0.32
BRCA1-228ENST00000618469 FGF19O95750 216 aa17.05■□□□□ 0.32
BRCA1-228ENST00000618469 BMP6P22004 513 aa17.05■□□□□ 0.32
BRCA1-228ENST00000618469 FCARP24071 287 aa17.05■□□□□ 0.32
BRCA1-228ENST00000618469 CDC25CP30307 473 aa17.05■□□□□ 0.32
BRCA1-228ENST00000618469 CDH8P55286 799 aa17.05■□□□□ 0.32
BRCA1-228ENST00000618469 RPL10AP62906 217 aaKnown RBP17.05■□□□□ 0.32
BRCA1-228ENST00000618469 CYP4F8P98187 520 aa17.05■□□□□ 0.32
BRCA1-228ENST00000618469 DDR2Q16832 855 aa17.05■□□□□ 0.32
BRCA1-228ENST00000618469 SGSM1Q2NKQ1 1148 aa17.05■□□□□ 0.32
BRCA1-228ENST00000618469 TCERG1LQ5VWI1 586 aa17.05■□□□□ 0.32
BRCA1-228ENST00000618469 GAREM2Q75VX8 874 aa17.05■□□□□ 0.32
BRCA1-228ENST00000618469 SCN4BQ8IWT1 228 aa17.05■□□□□ 0.32
BRCA1-228ENST00000618469 ZSCAN18Q8TBC5 510 aaPredicted RBP17.05■□□□□ 0.32
BRCA1-228ENST00000618469 TAF4BQ92750 862 aa17.05■□□□□ 0.32
BRCA1-228ENST00000618469 SMARCD2Q92925 531 aa17.05■□□□□ 0.32
BRCA1-228ENST00000618469 PCED1BQ96HM7 432 aa17.05■□□□□ 0.32
BRCA1-228ENST00000618469 DHTKD1Q96HY7 919 aaPredicted RBP17.05■□□□□ 0.32
BRCA1-228ENST00000618469 SDCBP2Q9H190 292 aa17.05■□□□□ 0.32
BRCA1-228ENST00000618469 IL21Q9HBE4 155 aa17.05■□□□□ 0.32
BRCA1-228ENST00000618469 ARHGEF3Q9NR81 526 aa17.05■□□□□ 0.32
BRCA1-228ENST00000618469 DLL3Q9NYJ7 618 aa17.05■□□□□ 0.32
BRCA1-228ENST00000618469 MAGEC2Q9UBF1 373 aaPredicted RBP17.05■□□□□ 0.32
BRCA1-228ENST00000618469 MAGED2Q9UNF1 606 aaPredicted RBP17.05■□□□□ 0.32
BRCA1-228ENST00000618469 FAM163BP0C2L3 166 aa17.04■□□□□ 0.32
BRCA1-228ENST00000618469 CSH1P0DML2 217 aa17.04■□□□□ 0.32
BRCA1-228ENST00000618469 CSH2P0DML3 217 aa17.04■□□□□ 0.32
BRCA1-228ENST00000618469 BDNFP23560 247 aa17.04■□□□□ 0.32
BRCA1-228ENST00000618469 MAGEA11P43364 429 aa17.04■□□□□ 0.32
BRCA1-228ENST00000618469 ASPAP45381 313 aa17.04■□□□□ 0.32
BRCA1-228ENST00000618469 ARHGAP15Q53QZ3 475 aa17.04■□□□□ 0.32
BRCA1-228ENST00000618469 GPR158Q5T848 1215 aa17.04■□□□□ 0.32
BRCA1-228ENST00000618469 KRT39Q6A163 491 aa17.04■□□□□ 0.32
BRCA1-228ENST00000618469 TANGO2Q6ICL3 276 aa17.04■□□□□ 0.32
BRCA1-228ENST00000618469 MAML2Q8IZL2 1156 aaPredicted RBP17.04■□□□□ 0.32
BRCA1-228ENST00000618469 SUMF1Q8NBK3 374 aa17.04■□□□□ 0.32
BRCA1-228ENST00000618469 B3GALNT2Q8NCR0 500 aa17.04■□□□□ 0.32
BRCA1-228ENST00000618469 MYCBPAPQ8TBZ2 947 aa17.04■□□□□ 0.32
BRCA1-228ENST00000618469 NELFBQ8WX92 580 aa17.04■□□□□ 0.32
BRCA1-228ENST00000618469 ELSPBP1Q96BH3 223 aa17.04■□□□□ 0.32
BRCA1-228ENST00000618469 ZFP14Q9HCL3 533 aa17.04■□□□□ 0.32
BRCA1-228ENST00000618469 SLC2A4RGQ9NR83 387 aa17.04■□□□□ 0.32
BRCA1-228ENST00000618469 TPRP12270 2363 aaKnown RBP17.04■□□□□ 0.32
BRCA1-228ENST00000618469 GPR179Q6PRD1 2367 aa17.04■□□□□ 0.32
BRCA1-228ENST00000618469 DENND4CQ5VZ89 1909 aa17.04■□□□□ 0.32
BRCA1-228ENST00000618469 STX10O60499 249 aa17.03■□□□□ 0.32
BRCA1-228ENST00000618469 HMGA1P17096 107 aaKnown RBP17.03■□□□□ 0.32
BRCA1-228ENST00000618469 PTPN1P18031 435 aaKnown RBP17.03■□□□□ 0.32
BRCA1-228ENST00000618469 GTF2H1P32780 548 aa17.03■□□□□ 0.32
BRCA1-228ENST00000618469 GPC5P78333 572 aa17.03■□□□□ 0.32
BRCA1-228ENST00000618469 GRM2Q14416 872 aa17.03■□□□□ 0.32
BRCA1-228ENST00000618469 ZC3H14Q6PJT7 736 aaKnown RBP17.03■□□□□ 0.32
BRCA1-228ENST00000618469 CCDC150Q8NCX0 1101 aa17.03■□□□□ 0.32
BRCA1-228ENST00000618469 PLA2G2FQ9BZM2 168 aa17.03■□□□□ 0.32
BRCA1-228ENST00000618469 GPR88Q9GZN0 384 aa17.03■□□□□ 0.32
BRCA1-228ENST00000618469 NIF3L1Q9GZT8 377 aa17.03■□□□□ 0.32
BRCA1-228ENST00000618469 APOBEC3GQ9HC16 384 aaKnown RBP17.03■□□□□ 0.32
BRCA1-228ENST00000618469 HMGXB4Q9UGU5 601 aa17.03■□□□□ 0.32
BRCA1-228ENST00000618469 NCANO14594 1321 aa17.02■□□□□ 0.32
BRCA1-228ENST00000618469 GREB1Q4ZG55 1949 aa17.02■□□□□ 0.32
BRCA1-228ENST00000618469 BICDL2A1A5D9 508 aa17.02■□□□□ 0.32
BRCA1-228ENST00000618469 SLC38A8A6NNN8 435 aa17.02■□□□□ 0.32
BRCA1-228ENST00000618469 PPP1R3GB7ZBB8 358 aa17.02■□□□□ 0.32
BRCA1-228ENST00000618469 NOL4O94818 638 aa17.02■□□□□ 0.32
BRCA1-228ENST00000618469 ANXA13P27216 316 aa17.02■□□□□ 0.32
BRCA1-228ENST00000618469 GRIK1P39086 918 aa17.02■□□□□ 0.32
BRCA1-228ENST00000618469 VIPR2P41587 438 aa17.02■□□□□ 0.32
BRCA1-228ENST00000618469 STX17P56962 302 aa17.02■□□□□ 0.32
BRCA1-228ENST00000618469 PAK1Q13153 545 aa17.02■□□□□ 0.32
BRCA1-228ENST00000618469 ORC1Q13415 861 aa17.02■□□□□ 0.32
BRCA1-228ENST00000618469 CCDC40Q4G0X9 1142 aa17.02■□□□□ 0.32
BRCA1-228ENST00000618469 TTI2Q6NXR4 508 aa17.02■□□□□ 0.32
BRCA1-228ENST00000618469 VSTM1Q6UX27 236 aa17.02■□□□□ 0.32
BRCA1-228ENST00000618469 TRIML1Q8N9V2 468 aa17.02■□□□□ 0.32
BRCA1-228ENST00000618469 TNIP3Q96KP6 325 aa17.02■□□□□ 0.32
BRCA1-228ENST00000618469 CEP63Q96MT8 703 aa17.02■□□□□ 0.32
BRCA1-228ENST00000618469 ZNF518BQ9C0D4 1074 aa17.02■□□□□ 0.32
BRCA1-228ENST00000618469 ELOVL4Q9GZR5 314 aa17.02■□□□□ 0.32
BRCA1-228ENST00000618469 KIAA1468Q9P260 1216 aa17.02■□□□□ 0.32
BRCA1-228ENST00000618469 NCDNQ9UBB6 729 aa17.02■□□□□ 0.32
BRCA1-228ENST00000618469 ARMCX3Q9UH62 379 aaPredicted RBP17.02■□□□□ 0.32
BRCA1-228ENST00000618469 MTF2Q9Y483 593 aaPredicted RBP17.02■□□□□ 0.32
BRCA1-228ENST00000618469 COL4A2P08572 1712 aa17.01■□□□□ 0.31
BRCA1-228ENST00000618469 ATP8B3O60423 1300 aa17.01■□□□□ 0.31
BRCA1-228ENST00000618469 TRIM66O15016 1216 aa17.01■□□□□ 0.31
BRCA1-228ENST00000618469 CD72P21854 359 aa17.01■□□□□ 0.31
BRCA1-228ENST00000618469 NDST1P52848 882 aa17.01■□□□□ 0.31
BRCA1-228ENST00000618469 NLRP12P59046 1061 aa17.01■□□□□ 0.31
BRCA1-228ENST00000618469 CBWD6Q4V339 395 aa17.01■□□□□ 0.31
BRCA1-228ENST00000618469 CBWD3Q5JTY5 395 aa17.01■□□□□ 0.31
BRCA1-228ENST00000618469 CBWD5Q5RIA9 395 aa17.01■□□□□ 0.31
BRCA1-228ENST00000618469 PHLDB3Q6NSJ2 640 aa17.01■□□□□ 0.31
BRCA1-228ENST00000618469 VITQ6UXI7 678 aa17.01■□□□□ 0.31
BRCA1-228ENST00000618469 CLEC17AQ6ZS10 378 aa17.01■□□□□ 0.31
BRCA1-228ENST00000618469 FAM35AQ86V20 835 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms