RNA–Protein interactions for RNA: ENST00000558827.1

SMAD3-208, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 552 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-208ENST00000558827 C2orf78A6NCI8 922 aa13.35□□□□□ -0.27
SMAD3-208ENST00000558827 F8VP50 259 aa13.35□□□□□ -0.27
SMAD3-208ENST00000558827 TACC1O75410 805 aa13.35□□□□□ -0.27
SMAD3-208ENST00000558827 NOL4O94818 638 aa13.35□□□□□ -0.27
SMAD3-208ENST00000558827 AVPR1AP37288 418 aa13.35□□□□□ -0.27
SMAD3-208ENST00000558827 PIK3CAP42336 1068 aa13.35□□□□□ -0.27
SMAD3-208ENST00000558827 CSTF1Q05048 431 aaKnown RBP13.35□□□□□ -0.27
SMAD3-208ENST00000558827 PPP3CAQ08209 521 aa13.35□□□□□ -0.27
SMAD3-208ENST00000558827 KCNB1Q14721 858 aa13.35□□□□□ -0.27
SMAD3-208ENST00000558827 TXNDC11Q6PKC3 985 aa13.35□□□□□ -0.27
SMAD3-208ENST00000558827 ACOT1Q86TX2 421 aa13.35□□□□□ -0.27
SMAD3-208ENST00000558827 FAM186BQ8IYM0 893 aa13.35□□□□□ -0.27
SMAD3-208ENST00000558827 CMTM8Q8IZV2 173 aa13.35□□□□□ -0.27
SMAD3-208ENST00000558827 ARL14EPQ8N8R7 260 aaPredicted RBP13.35□□□□□ -0.27
SMAD3-208ENST00000558827 ENGASEQ8NFI3 743 aa13.35□□□□□ -0.27
SMAD3-208ENST00000558827 MYCBPAPQ8TBZ2 947 aa13.35□□□□□ -0.27
SMAD3-208ENST00000558827 DNASE1L2Q92874 299 aa13.35□□□□□ -0.27
SMAD3-208ENST00000558827 USP13Q92995 863 aaPredicted RBP13.35□□□□□ -0.27
SMAD3-208ENST00000558827 IRF2BPLQ9H1B7 796 aa13.35□□□□□ -0.27
SMAD3-208ENST00000558827 ABCB6Q9NP58 842 aa13.35□□□□□ -0.27
SMAD3-208ENST00000558827 TRAF3IP3Q9Y228 551 aa13.35□□□□□ -0.27
SMAD3-208ENST00000558827 WDR87Q6ZQQ6 2873 aa13.34□□□□□ -0.27
SMAD3-208ENST00000558827 ARNTLO00327 626 aa13.34□□□□□ -0.27
SMAD3-208ENST00000558827 SCAMP3O14828 347 aaKnown RBP13.34□□□□□ -0.27
SMAD3-208ENST00000558827 CHADO15335 359 aa13.34□□□□□ -0.27
SMAD3-208ENST00000558827 SP9P0CG40 484 aa13.34□□□□□ -0.27
SMAD3-208ENST00000558827 KRT13P13646 458 aa13.34□□□□□ -0.27
SMAD3-208ENST00000558827 ARSAP15289 507 aa13.34□□□□□ -0.27
SMAD3-208ENST00000558827 ANXA13P27216 316 aa13.34□□□□□ -0.27
SMAD3-208ENST00000558827 HOXC13P31276 330 aa13.34□□□□□ -0.27
SMAD3-208ENST00000558827 ATICP31939 592 aa13.34□□□□□ -0.27
SMAD3-208ENST00000558827 PRCPP42785 496 aa13.34□□□□□ -0.27
SMAD3-208ENST00000558827 FZD5Q13467 585 aa13.34□□□□□ -0.27
SMAD3-208ENST00000558827 ZACNQ401N2 412 aa13.34□□□□□ -0.27
SMAD3-208ENST00000558827 CFAP221Q4G0U5 840 aa13.34□□□□□ -0.27
SMAD3-208ENST00000558827 MON1AQ86VX9 555 aa13.34□□□□□ -0.27
SMAD3-208ENST00000558827 MAML2Q8IZL2 1156 aaPredicted RBP13.34□□□□□ -0.27
SMAD3-208ENST00000558827 GUF1Q8N442 669 aaKnown RBP13.34□□□□□ -0.27
SMAD3-208ENST00000558827 B3GALNT2Q8NCR0 500 aa13.34□□□□□ -0.27
SMAD3-208ENST00000558827 SPATA18Q8TC71 538 aa13.34□□□□□ -0.27
SMAD3-208ENST00000558827 TMC2Q8TDI7 906 aa13.34□□□□□ -0.27
SMAD3-208ENST00000558827 E2F7Q96AV8 911 aa13.34□□□□□ -0.27
SMAD3-208ENST00000558827 FUBP3Q96I24 572 aaKnown RBP eCLIP13.34□□□□□ -0.27
SMAD3-208ENST00000558827 EBF3Q9H4W6 596 aa13.34□□□□□ -0.27
SMAD3-208ENST00000558827 HMGXB4Q9UGU5 601 aa13.34□□□□□ -0.27
SMAD3-208ENST00000558827 PCDHA5Q9Y5H7 936 aa13.34□□□□□ -0.27
SMAD3-208ENST00000558827 OBSL1O75147 1896 aa13.33□□□□□ -0.27
SMAD3-208ENST00000558827 NUP210Q8TEM1 1887 aaPredicted RBP13.33□□□□□ -0.27
SMAD3-208ENST00000558827 MYH10P35580 1976 aa13.33□□□□□ -0.28
SMAD3-208ENST00000558827 TRIM49BA6NDI0 452 aa13.33□□□□□ -0.28
SMAD3-208ENST00000558827 MAN2B1O00754 1011 aa13.33□□□□□ -0.28
SMAD3-208ENST00000558827 LAMTOR5O43504 91 aa13.33□□□□□ -0.28
SMAD3-208ENST00000558827 KIF20AO95235 890 aa13.33□□□□□ -0.28
SMAD3-208ENST00000558827 CKMP06732 381 aa13.33□□□□□ -0.28
SMAD3-208ENST00000558827 CCDC130P13994 396 aa13.33□□□□□ -0.28
SMAD3-208ENST00000558827 PSMC2P35998 433 aaKnown RBP13.33□□□□□ -0.28
SMAD3-208ENST00000558827 MAGEA11P43364 429 aa13.33□□□□□ -0.28
SMAD3-208ENST00000558827 NDST1P52848 882 aa13.33□□□□□ -0.28
SMAD3-208ENST00000558827 AP3M2P53677 418 aa13.33□□□□□ -0.28
SMAD3-208ENST00000558827 CLDN10P78369 228 aa13.33□□□□□ -0.28
SMAD3-208ENST00000558827 FAM160A1Q05DH4 1040 aa13.33□□□□□ -0.28
SMAD3-208ENST00000558827 FCHO2Q0JRZ9 810 aa13.33□□□□□ -0.28
SMAD3-208ENST00000558827 MTAPQ13126 283 aa13.33□□□□□ -0.28
SMAD3-208ENST00000558827 PON2Q15165 354 aa13.33□□□□□ -0.28
SMAD3-208ENST00000558827 MAPRE1Q15691 268 aaKnown RBP13.33□□□□□ -0.28
SMAD3-208ENST00000558827 SGSM1Q2NKQ1 1148 aa13.33□□□□□ -0.28
SMAD3-208ENST00000558827 ARHGAP29Q52LW3 1261 aa13.33□□□□□ -0.28
SMAD3-208ENST00000558827 DENND5BQ6ZUT9 1274 aa13.33□□□□□ -0.28
SMAD3-208ENST00000558827 CELF5Q8N6W0 485 aaKnown RBP13.33□□□□□ -0.28
SMAD3-208ENST00000558827 TAS1R2Q8TE23 839 aa13.33□□□□□ -0.28
SMAD3-208ENST00000558827 SMARCE1Q969G3 411 aa13.33□□□□□ -0.28
SMAD3-208ENST00000558827 JAKMIP2Q96AA8 810 aa13.33□□□□□ -0.28
SMAD3-208ENST00000558827 KCNK16Q96T55 309 aa13.33□□□□□ -0.28
SMAD3-208ENST00000558827 APOBEC3GQ9HC16 384 aaKnown RBP13.33□□□□□ -0.28
SMAD3-208ENST00000558827 FAM49BQ9NUQ9 324 aa13.33□□□□□ -0.28
SMAD3-208ENST00000558827 TDP1Q9NUW8 608 aa13.33□□□□□ -0.28
SMAD3-208ENST00000558827 MRPS17Q9Y2R5 130 aaKnown RBP13.33□□□□□ -0.28
SMAD3-208ENST00000558827 FAM186AA6NE01 2351 aa13.33□□□□□ -0.28
SMAD3-208ENST00000558827 EP300Q09472 2414 aaPredicted RBP13.33□□□□□ -0.28
SMAD3-208ENST00000558827 GREB1Q4ZG55 1949 aa13.33□□□□□ -0.28
SMAD3-208ENST00000558827 ANAPC1Q9H1A4 1944 aa13.33□□□□□ -0.28
SMAD3-208ENST00000558827 TRAV19A0A0A6YYK7 116 aa13.32□□□□□ -0.28
SMAD3-208ENST00000558827 OTOL1A6NHN0 477 aaPredicted RBP13.32□□□□□ -0.28
SMAD3-208ENST00000558827 SPECC1L-ADORA2AF8WAN1 911 aa13.32□□□□□ -0.28
SMAD3-208ENST00000558827 NCAM2O15394 837 aa13.32□□□□□ -0.28
SMAD3-208ENST00000558827 STAU1O95793 577 aaKnown RBP13.32□□□□□ -0.28
SMAD3-208ENST00000558827 HDCP19113 662 aa13.32□□□□□ -0.28
SMAD3-208ENST00000558827 CD58P19256 250 aa13.32□□□□□ -0.28
SMAD3-208ENST00000558827 RPL13P26373 211 aaKnown RBP13.32□□□□□ -0.28
SMAD3-208ENST00000558827 ADORA2BP29275 332 aa13.32□□□□□ -0.28
SMAD3-208ENST00000558827 NBL1P41271 181 aa13.32□□□□□ -0.28
SMAD3-208ENST00000558827 PMS1P54277 932 aaKnown RBP13.32□□□□□ -0.28
SMAD3-208ENST00000558827 TAF10Q12962 218 aa13.32□□□□□ -0.28
SMAD3-208ENST00000558827 ZCWPW2Q504Y3 356 aa13.32□□□□□ -0.28
SMAD3-208ENST00000558827 WDR44Q5JSH3 913 aa13.32□□□□□ -0.28
SMAD3-208ENST00000558827 NAIF1Q69YI7 327 aaPredicted RBP13.32□□□□□ -0.28
SMAD3-208ENST00000558827 ANKRD40Q6AI12 368 aa13.32□□□□□ -0.28
SMAD3-208ENST00000558827 VSTM1Q6UX27 236 aa13.32□□□□□ -0.28
SMAD3-208ENST00000558827 PAQR9Q6ZVX9 377 aa13.32□□□□□ -0.28
SMAD3-208ENST00000558827 C12orf29Q8N999 325 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms