RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 SLC2A4RGQ9NR83 387 aa12.34□□□□□ -0.43
CCDC88C-208ENST00000554165 FAM49BQ9NUQ9 324 aa12.34□□□□□ -0.43
CCDC88C-208ENST00000554165 WNT16Q9UBV4 365 aa12.34□□□□□ -0.43
CCDC88C-208ENST00000554165 ARMCX3Q9UH62 379 aaPredicted RBP12.34□□□□□ -0.43
CCDC88C-208ENST00000554165 PTPRDP23468 1912 aa12.34□□□□□ -0.43
CCDC88C-208ENST00000554165 HEPACAM2A8MVW5 462 aa12.33□□□□□ -0.44
CCDC88C-208ENST00000554165 CSH1P0DML2 217 aa12.33□□□□□ -0.44
CCDC88C-208ENST00000554165 CSH2P0DML3 217 aa12.33□□□□□ -0.44
CCDC88C-208ENST00000554165 CD72P21854 359 aa12.33□□□□□ -0.44
CCDC88C-208ENST00000554165 AVPR2P30518 371 aa12.33□□□□□ -0.44
CCDC88C-208ENST00000554165 ENPEPQ07075 957 aa12.33□□□□□ -0.44
CCDC88C-208ENST00000554165 LRMPQ12912 555 aa12.33□□□□□ -0.44
CCDC88C-208ENST00000554165 PAK1Q13153 545 aa12.33□□□□□ -0.44
CCDC88C-208ENST00000554165 MAPRE1Q15691 268 aaKnown RBP12.33□□□□□ -0.44
CCDC88C-208ENST00000554165 FILIP1Q7Z7B0 1213 aa12.33□□□□□ -0.44
CCDC88C-208ENST00000554165 FAM35AQ86V20 835 aa12.33□□□□□ -0.44
CCDC88C-208ENST00000554165 SUGP1Q8IWZ8 645 aaKnown RBP12.33□□□□□ -0.44
CCDC88C-208ENST00000554165 FUKQ8N0W3 1084 aa12.33□□□□□ -0.44
CCDC88C-208ENST00000554165 MAB21L3Q8N8X9 362 aa12.33□□□□□ -0.44
CCDC88C-208ENST00000554165 RIN3Q8TB24 985 aa12.33□□□□□ -0.44
CCDC88C-208ENST00000554165 GPT2Q8TD30 523 aa12.33□□□□□ -0.44
CCDC88C-208ENST00000554165 ZFYVE19Q96K21 471 aa12.33□□□□□ -0.44
CCDC88C-208ENST00000554165 CEP63Q96MT8 703 aa12.33□□□□□ -0.44
CCDC88C-208ENST00000554165 SLC22A12Q96S37 553 aa12.33□□□□□ -0.44
CCDC88C-208ENST00000554165 CYP2S1Q96SQ9 504 aa12.33□□□□□ -0.44
CCDC88C-208ENST00000554165 SRRTQ9BXP5 876 aaKnown RBP12.33□□□□□ -0.44
CCDC88C-208ENST00000554165 ELOVL4Q9GZR5 314 aa12.33□□□□□ -0.44
CCDC88C-208ENST00000554165 NIF3L1Q9GZT8 377 aa12.33□□□□□ -0.44
CCDC88C-208ENST00000554165 MFSD1Q9H3U5 465 aa12.33□□□□□ -0.44
CCDC88C-208ENST00000554165 TASP1Q9H6P5 420 aa12.33□□□□□ -0.44
CCDC88C-208ENST00000554165 TRPV4Q9HBA0 871 aa12.33□□□□□ -0.44
CCDC88C-208ENST00000554165 RAB20Q9NX57 234 aa12.33□□□□□ -0.44
CCDC88C-208ENST00000554165 CCL26Q9Y258 94 aa12.33□□□□□ -0.44
CCDC88C-208ENST00000554165 WDFY4Q6ZS81 3184 aa12.33□□□□□ -0.44
CCDC88C-208ENST00000554165 SHISA7A6NL88 538 aa12.32□□□□□ -0.44
CCDC88C-208ENST00000554165 STK25O00506 426 aa12.32□□□□□ -0.44
CCDC88C-208ENST00000554165 BEST1O76090 585 aa12.32□□□□□ -0.44
CCDC88C-208ENST00000554165 P4HA1P13674 534 aa12.32□□□□□ -0.44
CCDC88C-208ENST00000554165 CDC25CP30307 473 aa12.32□□□□□ -0.44
CCDC88C-208ENST00000554165 GDI1P31150 447 aa12.32□□□□□ -0.44
CCDC88C-208ENST00000554165 CCDC40Q4G0X9 1142 aa12.32□□□□□ -0.44
CCDC88C-208ENST00000554165 SLC44A4Q53GD3 710 aa12.32□□□□□ -0.44
CCDC88C-208ENST00000554165 ZNF394Q53GI3 561 aa12.32□□□□□ -0.44
CCDC88C-208ENST00000554165 ARHGAP15Q53QZ3 475 aa12.32□□□□□ -0.44
CCDC88C-208ENST00000554165 VSTM1Q6UX27 236 aa12.32□□□□□ -0.44
CCDC88C-208ENST00000554165 CRYBG2Q8N1P7 616 aa12.32□□□□□ -0.44
CCDC88C-208ENST00000554165 FBXL13Q8NEE6 735 aa12.32□□□□□ -0.44
CCDC88C-208ENST00000554165 ZMIZ2Q8NF64 920 aa12.32□□□□□ -0.44
CCDC88C-208ENST00000554165 SLC2A14Q8TDB8 520 aa12.32□□□□□ -0.44
CCDC88C-208ENST00000554165 SPATA17Q96L03 361 aa12.32□□□□□ -0.44
CCDC88C-208ENST00000554165 MYRFLQ96LU7 910 aa12.32□□□□□ -0.44
CCDC88C-208ENST00000554165 SMOQ99835 787 aa12.32□□□□□ -0.44
CCDC88C-208ENST00000554165 MED10Q9BTT4 135 aa12.32□□□□□ -0.44
CCDC88C-208ENST00000554165 TRMT61BQ9BVS5 477 aaKnown RBP12.32□□□□□ -0.44
CCDC88C-208ENST00000554165 FOXQ1Q9C009 403 aa12.32□□□□□ -0.44
CCDC88C-208ENST00000554165 TBC1D17Q9HA65 648 aa12.32□□□□□ -0.44
CCDC88C-208ENST00000554165 ARHGEF3Q9NR81 526 aa12.32□□□□□ -0.44
CCDC88C-208ENST00000554165 MTF2Q9Y483 593 aaPredicted RBP12.32□□□□□ -0.44
CCDC88C-208ENST00000554165 GREB1Q4ZG55 1949 aa12.32□□□□□ -0.44
CCDC88C-208ENST00000554165 DENND4CQ5VZ89 1909 aa12.31□□□□□ -0.44
CCDC88C-208ENST00000554165 BICDL2A1A5D9 508 aa12.31□□□□□ -0.44
CCDC88C-208ENST00000554165 C2orf78A6NCI8 922 aa12.31□□□□□ -0.44
CCDC88C-208ENST00000554165 STX10O60499 249 aa12.31□□□□□ -0.44
CCDC88C-208ENST00000554165 CILPO75339 1184 aa12.31□□□□□ -0.44
CCDC88C-208ENST00000554165 FGF19O95750 216 aa12.31□□□□□ -0.44
CCDC88C-208ENST00000554165 ADORA2BP29275 332 aa12.31□□□□□ -0.44
CCDC88C-208ENST00000554165 PPP1R2P41236 205 aa12.31□□□□□ -0.44
CCDC88C-208ENST00000554165 FMO5P49326 533 aa12.31□□□□□ -0.44
CCDC88C-208ENST00000554165 PGFP49763 221 aa12.31□□□□□ -0.44
CCDC88C-208ENST00000554165 INCA1Q0VD86 236 aa12.31□□□□□ -0.44
CCDC88C-208ENST00000554165 IFRD2Q12894 506 aaPredicted RBP12.31□□□□□ -0.44
CCDC88C-208ENST00000554165 DPCR1Q3MIW9 517 aa12.31□□□□□ -0.44
CCDC88C-208ENST00000554165 ASTLQ6HA08 431 aaPredicted RBP12.31□□□□□ -0.44
CCDC88C-208ENST00000554165 FRMD5Q7Z6J6 570 aa12.31□□□□□ -0.44
CCDC88C-208ENST00000554165 IRF2BP1Q8IU81 584 aa12.31□□□□□ -0.44
CCDC88C-208ENST00000554165 MFSD6LQ8IWD5 586 aa12.31□□□□□ -0.44
CCDC88C-208ENST00000554165 TRIM59Q8IWR1 403 aa12.31□□□□□ -0.44
CCDC88C-208ENST00000554165 TRIML1Q8N9V2 468 aa12.31□□□□□ -0.44
CCDC88C-208ENST00000554165 PRSS33Q8NF86 280 aa12.31□□□□□ -0.44
CCDC88C-208ENST00000554165 SCAMP5Q8TAC9 235 aa12.31□□□□□ -0.44
CCDC88C-208ENST00000554165 TTC8Q8TAM2 541 aa12.31□□□□□ -0.44
CCDC88C-208ENST00000554165 USP13Q92995 863 aaPredicted RBP12.31□□□□□ -0.44
CCDC88C-208ENST00000554165 JAKMIP2Q96AA8 810 aa12.31□□□□□ -0.44
CCDC88C-208ENST00000554165 TRMT2BQ96GJ1 504 aaKnown RBP12.31□□□□□ -0.44
CCDC88C-208ENST00000554165 C8orf48Q96LL4 319 aa12.31□□□□□ -0.44
CCDC88C-208ENST00000554165 GCNAQ96QF7 691 aa12.31□□□□□ -0.44
CCDC88C-208ENST00000554165 IMPG2Q9BZV3 1241 aa12.31□□□□□ -0.44
CCDC88C-208ENST00000554165 GPR88Q9GZN0 384 aa12.31□□□□□ -0.44
CCDC88C-208ENST00000554165 NUP62CLQ9H1M0 184 aa12.31□□□□□ -0.44
CCDC88C-208ENST00000554165 BRD9Q9H8M2 597 aa12.31□□□□□ -0.44
CCDC88C-208ENST00000554165 CYP3A43Q9HB55 503 aa12.31□□□□□ -0.44
CCDC88C-208ENST00000554165 TRPC7Q9HCX4 862 aa12.31□□□□□ -0.44
CCDC88C-208ENST00000554165 HEBP1Q9NRV9 189 aa12.31□□□□□ -0.44
CCDC88C-208ENST00000554165 KRT82Q9NSB4 513 aa12.31□□□□□ -0.44
CCDC88C-208ENST00000554165 COQ4Q9Y3A0 265 aa12.31□□□□□ -0.44
CCDC88C-208ENST00000554165 OBSL1O75147 1896 aa12.31□□□□□ -0.44
CCDC88C-208ENST00000554165 KMT2EQ8IZD2 1858 aa12.31□□□□□ -0.44
CCDC88C-208ENST00000554165 AP1G2O75843 785 aa12.3□□□□□ -0.44
CCDC88C-208ENST00000554165 CALCAP01258 141 aa12.3□□□□□ -0.44
CCDC88C-208ENST00000554165 DCNP07585 359 aaKnown RBP12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms