RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 C15orf59Q2T9L4 293 aaPredicted RBP10.65□□□□□ -0.71
MCF2-209ENST00000520602 PTPN20Q4JDL3 420 aa10.65□□□□□ -0.71
MCF2-209ENST00000520602 C1orf127Q8N9H9 656 aa10.65□□□□□ -0.71
MCF2-209ENST00000520602 FBXO41Q8TF61 875 aa10.65□□□□□ -0.71
MCF2-209ENST00000520602 DDX1Q92499 740 aaKnown RBP10.65□□□□□ -0.71
MCF2-209ENST00000520602 TINF2Q9BSI4 451 aa10.65□□□□□ -0.71
MCF2-209ENST00000520602 ANKRD31Q8N7Z5 1873 aa10.64□□□□□ -0.71
MCF2-209ENST00000520602 TMEM191CA6NGB0 347 aa10.64□□□□□ -0.71
MCF2-209ENST00000520602 BTBD19C9JJ37 291 aa10.64□□□□□ -0.71
MCF2-209ENST00000520602 CYP1A1P04798 512 aaPredicted RBP10.64□□□□□ -0.71
MCF2-209ENST00000520602 SAT1P21673 171 aa10.64□□□□□ -0.71
MCF2-209ENST00000520602 VCPP55072 806 aaKnown RBP10.64□□□□□ -0.71
MCF2-209ENST00000520602 FBXW10Q5XX13 1052 aa10.64□□□□□ -0.71
MCF2-209ENST00000520602 PLEKHA7Q6IQ23 1121 aa10.64□□□□□ -0.71
MCF2-209ENST00000520602 TBC1D1Q86TI0 1168 aaPredicted RBP10.64□□□□□ -0.71
MCF2-209ENST00000520602 FAM172AQ8WUF8 416 aa10.64□□□□□ -0.71
MCF2-209ENST00000520602 TTC17Q96AE7 1141 aa10.64□□□□□ -0.71
MCF2-209ENST00000520602 ZNF560Q96MR9 790 aa10.64□□□□□ -0.71
MCF2-209ENST00000520602 SLITRK1Q96PX8 696 aa10.64□□□□□ -0.71
MCF2-209ENST00000520602 CYP3A43Q9HB55 503 aa10.64□□□□□ -0.71
MCF2-209ENST00000520602 TROVE2P10155 538 aaKnown RBP eCLIP10.64□□□□□ -0.71
MCF2-209ENST00000520602 PTGIRP43119 386 aa10.64□□□□□ -0.71
MCF2-209ENST00000520602 DCAF6Q58WW2 860 aa10.64□□□□□ -0.71
MCF2-209ENST00000520602 TSHZ1Q6ZSZ6 1077 aa10.64□□□□□ -0.71
MCF2-209ENST00000520602 DNAAF3Q8N9W5 541 aa10.64□□□□□ -0.71
MCF2-209ENST00000520602 CCDC110Q8TBZ0 833 aa10.64□□□□□ -0.71
MCF2-209ENST00000520602 DDX27Q96GQ7 796 aaKnown RBP10.64□□□□□ -0.71
MCF2-209ENST00000520602 SERPINB12Q96P63 405 aa10.64□□□□□ -0.71
MCF2-209ENST00000520602 HAPLN2Q9GZV7 340 aa10.64□□□□□ -0.71
MCF2-209ENST00000520602 NINJ2Q9NZG7 142 aa10.64□□□□□ -0.71
MCF2-209ENST00000520602 ATG7O95352 703 aa10.64□□□□□ -0.71
MCF2-209ENST00000520602 CORO7P57737 925 aa10.64□□□□□ -0.71
MCF2-209ENST00000520602 PDE1BQ01064 536 aa10.64□□□□□ -0.71
MCF2-209ENST00000520602 GHRHRQ02643 423 aa10.64□□□□□ -0.71
MCF2-209ENST00000520602 FAM182AQ5T1J6 154 aa10.64□□□□□ -0.71
MCF2-209ENST00000520602 ANKRD20A3Q5VUR7 823 aa10.64□□□□□ -0.71
MCF2-209ENST00000520602 HEATR6Q6AI08 1181 aaKnown RBP10.64□□□□□ -0.71
MCF2-209ENST00000520602 MTHFD1LQ6UB35 978 aa10.64□□□□□ -0.71
MCF2-209ENST00000520602 GPR142Q7Z601 462 aa10.64□□□□□ -0.71
MCF2-209ENST00000520602 LRRN4Q8WUT4 740 aa10.64□□□□□ -0.71
MCF2-209ENST00000520602 ART4Q93070 314 aa10.64□□□□□ -0.71
MCF2-209ENST00000520602 KLHL29Q96CT2 875 aa10.64□□□□□ -0.71
MCF2-209ENST00000520602 TNIP3Q96KP6 325 aa10.64□□□□□ -0.71
MCF2-209ENST00000520602 TSNARE1Q96NA8 513 aa10.64□□□□□ -0.71
MCF2-209ENST00000520602 CPXM1Q96SM3 734 aa10.64□□□□□ -0.71
MCF2-209ENST00000520602 CNPY3Q9BT09 278 aa10.64□□□□□ -0.71
MCF2-209ENST00000520602 NAALADL1Q9UQQ1 740 aa10.64□□□□□ -0.71
MCF2-209ENST00000520602 BRWD3Q6RI45 1802 aa10.63□□□□□ -0.71
MCF2-209ENST00000520602 FOXO6A8MYZ6 492 aa10.63□□□□□ -0.71
MCF2-209ENST00000520602 I3L4J1 428 aa10.63□□□□□ -0.71
MCF2-209ENST00000520602 MTA2O94776 668 aa10.63□□□□□ -0.71
MCF2-209ENST00000520602 TCF4P15884 667 aa10.63□□□□□ -0.71
MCF2-209ENST00000520602 ATICP31939 592 aa10.63□□□□□ -0.71
MCF2-209ENST00000520602 AP1B1Q10567 949 aa10.63□□□□□ -0.71
MCF2-209ENST00000520602 PTK6Q13882 451 aa10.63□□□□□ -0.71
MCF2-209ENST00000520602 STILQ15468 1287 aa10.63□□□□□ -0.71
MCF2-209ENST00000520602 PDLIM7Q9NR12 457 aa10.63□□□□□ -0.71
MCF2-209ENST00000520602 TJP2Q9UDY2 1190 aa10.63□□□□□ -0.71
MCF2-209ENST00000520602 STBD1O95210 358 aa10.63□□□□□ -0.71
MCF2-209ENST00000520602 ACAT1P24752 427 aaKnown RBP10.63□□□□□ -0.71
MCF2-209ENST00000520602 GTF2A1P52655 376 aaPredicted RBP10.63□□□□□ -0.71
MCF2-209ENST00000520602 DCAF4L1Q3SXM0 396 aa10.63□□□□□ -0.71
MCF2-209ENST00000520602 CCDC14Q49A88 953 aa10.63□□□□□ -0.71
MCF2-209ENST00000520602 PAN2Q504Q3 1202 aaKnown RBP10.63□□□□□ -0.71
MCF2-209ENST00000520602 GRHL1Q9NZI5 618 aa10.63□□□□□ -0.71
MCF2-209ENST00000520602 DCTN4Q9UJW0 460 aa10.63□□□□□ -0.71
MCF2-209ENST00000520602 UBQLN1Q9UMX0 589 aaKnown RBP10.63□□□□□ -0.71
MCF2-209ENST00000520602 SIGLEC16A6NMB1 481 aa10.63□□□□□ -0.71
MCF2-209ENST00000520602 B4GALT4O60513 344 aa10.63□□□□□ -0.71
MCF2-209ENST00000520602 RECQL4O94761 1208 aa10.63□□□□□ -0.71
MCF2-209ENST00000520602 CD4P01730 458 aa10.63□□□□□ -0.71
MCF2-209ENST00000520602 PAEPP09466 180 aa10.63□□□□□ -0.71
MCF2-209ENST00000520602 ACO1P21399 889 aaKnown RBP10.63□□□□□ -0.71
MCF2-209ENST00000520602 MBTD1Q05BQ5 628 aa10.63□□□□□ -0.71
MCF2-209ENST00000520602 ZNF268Q14587 947 aaPredicted RBP10.63□□□□□ -0.71
MCF2-209ENST00000520602 PPIL6Q8IXY8 311 aa10.63□□□□□ -0.71
MCF2-209ENST00000520602 VPS52Q8N1B4 723 aa10.63□□□□□ -0.71
MCF2-209ENST00000520602 ZC3H15Q8WU90 426 aaKnown RBP10.63□□□□□ -0.71
MCF2-209ENST00000520602 PIK3R5Q8WYR1 880 aa10.63□□□□□ -0.71
MCF2-209ENST00000520602 LENG1Q96BZ8 264 aaPredicted RBP10.63□□□□□ -0.71
MCF2-209ENST00000520602 RRAGCQ9HB90 399 aa10.63□□□□□ -0.71
MCF2-209ENST00000520602 ITGA11Q9UKX5 1188 aa10.63□□□□□ -0.71
MCF2-209ENST00000520602 C11orf97A0A1B0GVM6 126 aaPredicted RBP10.62□□□□□ -0.71
MCF2-209ENST00000520602 HOXC6P09630 235 aa10.62□□□□□ -0.71
MCF2-209ENST00000520602 SSTR1P30872 391 aa10.62□□□□□ -0.71
MCF2-209ENST00000520602 MMRN1Q13201 1228 aa10.62□□□□□ -0.71
MCF2-209ENST00000520602 AUHQ13825 339 aaKnown RBP10.62□□□□□ -0.71
MCF2-209ENST00000520602 TARBP2Q15633 366 aaKnown RBP10.62□□□□□ -0.71
MCF2-209ENST00000520602 BOLA3Q53S33 107 aa10.62□□□□□ -0.71
MCF2-209ENST00000520602 SLC27A1Q6PCB7 646 aa10.62□□□□□ -0.71
MCF2-209ENST00000520602 PDZD4Q76G19 769 aaPredicted RBP10.62□□□□□ -0.71
MCF2-209ENST00000520602 TLK2Q86UE8 772 aa10.62□□□□□ -0.71
MCF2-209ENST00000520602 FAM131BQ86XD5 332 aa10.62□□□□□ -0.71
MCF2-209ENST00000520602 TMEM130Q8N3G9 435 aa10.62□□□□□ -0.71
MCF2-209ENST00000520602 RILPQ96NA2 401 aa10.62□□□□□ -0.71
MCF2-209ENST00000520602 SYT11Q9BT88 431 aa10.62□□□□□ -0.71
MCF2-209ENST00000520602 SLC13A1Q9BZW2 595 aa10.62□□□□□ -0.71
MCF2-209ENST00000520602 TIMM13Q9Y5L4 95 aaPredicted RBP10.62□□□□□ -0.71
MCF2-209ENST00000520602 CNTNAP2Q9UHC6 1331 aa10.62□□□□□ -0.71
MCF2-209ENST00000520602 IQANK1A0A1B0GTG1 560 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms