RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 TPD52L1Q16890 204 aaPredicted RBP19.24■□□□□ 0.67
SQSTM1-209ENST00000504627 KNOP1Q1ED39 458 aaKnown RBP19.24■□□□□ 0.67
SQSTM1-209ENST00000504627 SDHAF4Q5VUM1 108 aa19.24■□□□□ 0.67
SQSTM1-209ENST00000504627 TRAPPC11Q7Z392 1133 aa19.24■□□□□ 0.67
SQSTM1-209ENST00000504627 KCTD10Q9H3F6 313 aa19.24■□□□□ 0.67
SQSTM1-209ENST00000504627 ABCB6Q9NP58 842 aa19.24■□□□□ 0.67
SQSTM1-209ENST00000504627 OBP2AQ9NY56 170 aa19.24■□□□□ 0.67
SQSTM1-209ENST00000504627 ZMYM5Q9UJ78 669 aa19.24■□□□□ 0.67
SQSTM1-209ENST00000504627 CACNA1IQ9P0X4 2223 aa19.23■□□□□ 0.67
SQSTM1-209ENST00000504627 TRIM49BA6NDI0 452 aa19.23■□□□□ 0.67
SQSTM1-209ENST00000504627 GABRDO14764 452 aa19.23■□□□□ 0.67
SQSTM1-209ENST00000504627 EXOC3O60645 756 aa19.23■□□□□ 0.67
SQSTM1-209ENST00000504627 LMNAP02545 664 aaKnown RBP19.23■□□□□ 0.67
SQSTM1-209ENST00000504627 ZNF18P17022 549 aa19.23■□□□□ 0.67
SQSTM1-209ENST00000504627 AVPR1AP37288 418 aa19.23■□□□□ 0.67
SQSTM1-209ENST00000504627 PMS1P54277 932 aaKnown RBP19.23■□□□□ 0.67
SQSTM1-209ENST00000504627 CYP24A1Q07973 514 aa19.23■□□□□ 0.67
SQSTM1-209ENST00000504627 PSMD6Q15008 389 aa19.23■□□□□ 0.67
SQSTM1-209ENST00000504627 EDRF1Q3B7T1 1238 aa19.23■□□□□ 0.67
SQSTM1-209ENST00000504627 ARHGAP29Q52LW3 1261 aa19.23■□□□□ 0.67
SQSTM1-209ENST00000504627 SARM1Q6SZW1 724 aa19.23■□□□□ 0.67
SQSTM1-209ENST00000504627 GOLGA5Q8TBA6 731 aa19.23■□□□□ 0.67
SQSTM1-209ENST00000504627 BPIFB1Q8TDL5 484 aa19.23■□□□□ 0.67
SQSTM1-209ENST00000504627 MRPS31Q92665 395 aaKnown RBP19.23■□□□□ 0.67
SQSTM1-209ENST00000504627 CGRRF1Q99675 332 aa19.23■□□□□ 0.67
SQSTM1-209ENST00000504627 SLC46A2Q9BY10 475 aa19.23■□□□□ 0.67
SQSTM1-209ENST00000504627 HSD3B7Q9H2F3 369 aa19.23■□□□□ 0.67
SQSTM1-209ENST00000504627 THG1LQ9NWX6 298 aaKnown RBP19.23■□□□□ 0.67
SQSTM1-209ENST00000504627 FBXO4Q9UKT5 387 aa19.23■□□□□ 0.67
SQSTM1-209ENST00000504627 F5P12259 2224 aa19.23■□□□□ 0.67
SQSTM1-209ENST00000504627 MYBPHLA2RUH7 354 aa19.22■□□□□ 0.67
SQSTM1-209ENST00000504627 SHISA7A6NL88 538 aa19.22■□□□□ 0.67
SQSTM1-209ENST00000504627 SLC38A8A6NNN8 435 aa19.22■□□□□ 0.67
SQSTM1-209ENST00000504627 PDXKO00764 312 aa19.22■□□□□ 0.67
SQSTM1-209ENST00000504627 HCRTO43612 131 aa19.22■□□□□ 0.67
SQSTM1-209ENST00000504627 PRAMEF12O95522 483 aa19.22■□□□□ 0.67
SQSTM1-209ENST00000504627 FGFR1OPO95684 399 aaKnown RBP19.22■□□□□ 0.67
SQSTM1-209ENST00000504627 HMGA1P17096 107 aaKnown RBP19.22■□□□□ 0.67
SQSTM1-209ENST00000504627 WEE1P30291 646 aa19.22■□□□□ 0.67
SQSTM1-209ENST00000504627 TRPC3Q13507 836 aa19.22■□□□□ 0.67
SQSTM1-209ENST00000504627 ZNF528Q3MIS6 628 aa19.22■□□□□ 0.67
SQSTM1-209ENST00000504627 CDKAL1Q5VV42 579 aa19.22■□□□□ 0.67
SQSTM1-209ENST00000504627 C1orf228Q6PIY5 440 aa19.22■□□□□ 0.67
SQSTM1-209ENST00000504627 C4orf50Q6ZRC1 276 aa19.22■□□□□ 0.67
SQSTM1-209ENST00000504627 SCN4BQ8IWT1 228 aa19.22■□□□□ 0.67
SQSTM1-209ENST00000504627 MAML2Q8IZL2 1156 aaPredicted RBP19.22■□□□□ 0.67
SQSTM1-209ENST00000504627 CMTM8Q8IZV2 173 aa19.22■□□□□ 0.67
SQSTM1-209ENST00000504627 CELF5Q8N6W0 485 aaKnown RBP19.22■□□□□ 0.67
SQSTM1-209ENST00000504627 MAB21L3Q8N8X9 362 aa19.22■□□□□ 0.67
SQSTM1-209ENST00000504627 STKLD1Q8NE28 680 aa19.22■□□□□ 0.67
SQSTM1-209ENST00000504627 TTC8Q8TAM2 541 aa19.22■□□□□ 0.67
SQSTM1-209ENST00000504627 MSANTD3Q96H12 275 aa19.22■□□□□ 0.67
SQSTM1-209ENST00000504627 ZFYVE19Q96K21 471 aa19.22■□□□□ 0.67
SQSTM1-209ENST00000504627 SYT15Q9BQS2 421 aa19.22■□□□□ 0.67
SQSTM1-209ENST00000504627 SMG9Q9H0W8 520 aaKnown RBP19.22■□□□□ 0.67
SQSTM1-209ENST00000504627 SNX25Q9H3E2 840 aa19.22■□□□□ 0.67
SQSTM1-209ENST00000504627 THAP9Q9H5L6 903 aa19.22■□□□□ 0.67
SQSTM1-209ENST00000504627 C8orf33Q9H7E9 229 aaPredicted RBP19.22■□□□□ 0.67
SQSTM1-209ENST00000504627 LMAN1LQ9HAT1 526 aa19.22■□□□□ 0.67
SQSTM1-209ENST00000504627 UXTQ9UBK9 157 aaPredicted RBP19.22■□□□□ 0.67
SQSTM1-209ENST00000504627 CDH9Q9ULB4 789 aa19.22■□□□□ 0.67
SQSTM1-209ENST00000504627 TRAF3IP3Q9Y228 551 aa19.22■□□□□ 0.67
SQSTM1-209ENST00000504627 ARNTLO00327 626 aa19.21■□□□□ 0.67
SQSTM1-209ENST00000504627 CALUO43852 315 aaPredicted RBP19.21■□□□□ 0.67
SQSTM1-209ENST00000504627 PHACTR2O75167 634 aa19.21■□□□□ 0.67
SQSTM1-209ENST00000504627 CLSTN1O94985 981 aa19.21■□□□□ 0.67
SQSTM1-209ENST00000504627 CST3P01034 146 aaPredicted RBP19.21■□□□□ 0.67
SQSTM1-209ENST00000504627 F11P03951 625 aa19.21■□□□□ 0.67
SQSTM1-209ENST00000504627 PDGFRBP09619 1106 aa19.21■□□□□ 0.67
SQSTM1-209ENST00000504627 LMO2P25791 158 aa19.21■□□□□ 0.67
SQSTM1-209ENST00000504627 DDX6P26196 483 aaKnown RBP eCLIP19.21■□□□□ 0.671e-6■□□□□ 10.6
SQSTM1-209ENST00000504627 MLLT6P55198 1093 aaPredicted RBP19.21■□□□□ 0.67
SQSTM1-209ENST00000504627 PSMC1P62191 440 aaKnown RBP19.21■□□□□ 0.67
SQSTM1-209ENST00000504627 TNNC1P63316 161 aa19.21■□□□□ 0.67
SQSTM1-209ENST00000504627 PLCB2Q00722 1185 aa19.21■□□□□ 0.67
SQSTM1-209ENST00000504627 FZD5Q13467 585 aa19.21■□□□□ 0.67
SQSTM1-209ENST00000504627 MAPRE1Q15691 268 aaKnown RBP19.21■□□□□ 0.67
SQSTM1-209ENST00000504627 NFIL3Q16649 462 aa19.21■□□□□ 0.67
SQSTM1-209ENST00000504627 CFAP221Q4G0U5 840 aa19.21■□□□□ 0.67
SQSTM1-209ENST00000504627 ANKRD40Q6AI12 368 aa19.21■□□□□ 0.67
SQSTM1-209ENST00000504627 C12orf56Q8IXR9 622 aa19.21■□□□□ 0.67
SQSTM1-209ENST00000504627 ZC3H3Q8IXZ2 948 aaKnown RBP19.21■□□□□ 0.67
SQSTM1-209ENST00000504627 KBTBD7Q8WVZ9 684 aa19.21■□□□□ 0.67
SQSTM1-209ENST00000504627 FUBP3Q96I24 572 aaKnown RBP eCLIP19.21■□□□□ 0.67
SQSTM1-209ENST00000504627 LRRC3BQ96PB8 259 aa19.21■□□□□ 0.67
SQSTM1-209ENST00000504627 PKMYT1Q99640 499 aa19.21■□□□□ 0.67
SQSTM1-209ENST00000504627 DUSP9Q99956 384 aaKnown RBP19.21■□□□□ 0.67
SQSTM1-209ENST00000504627 FANCLQ9NW38 375 aa19.21■□□□□ 0.67
SQSTM1-209ENST00000504627 MAGEC2Q9UBF1 373 aaPredicted RBP19.21■□□□□ 0.67
SQSTM1-209ENST00000504627 FAM186AA6NE01 2351 aa19.2■□□□□ 0.66
SQSTM1-209ENST00000504627 TICRRQ7Z2Z1 1910 aa19.2■□□□□ 0.66
SQSTM1-209ENST00000504627 ATP2C2O75185 946 aa19.2■□□□□ 0.66
SQSTM1-209ENST00000504627 WARSP23381 471 aaKnown RBP19.2■□□□□ 0.66
SQSTM1-209ENST00000504627 SOX9P48436 509 aa19.2■□□□□ 0.66
SQSTM1-209ENST00000504627 FKBP3Q00688 224 aaKnown RBP19.2■□□□□ 0.66
SQSTM1-209ENST00000504627 MTAPQ13126 283 aa19.2■□□□□ 0.66
SQSTM1-209ENST00000504627 CCDC142Q17RM4 750 aa19.2■□□□□ 0.66
SQSTM1-209ENST00000504627 WDR72Q3MJ13 1102 aa19.2■□□□□ 0.66
SQSTM1-209ENST00000504627 TXNDC8Q6A555 127 aa19.2■□□□□ 0.66
SQSTM1-209ENST00000504627 FAM171BQ6P995 826 aa19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms