RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 NAALADL1Q9UQQ1 740 aa9.97□□□□□ -0.81
CUX1-206ENST00000437600 MYADML2A6NDP7 307 aa9.97□□□□□ -0.81
CUX1-206ENST00000437600 PGK1P00558 417 aa9.97□□□□□ -0.81
CUX1-206ENST00000437600 KRT3P12035 628 aa9.97□□□□□ -0.81
CUX1-206ENST00000437600 DRD4P21917 467 aa9.97□□□□□ -0.81
CUX1-206ENST00000437600 PSMA2P25787 234 aa9.97□□□□□ -0.81
CUX1-206ENST00000437600 RGS2P41220 211 aa9.97□□□□□ -0.81
CUX1-206ENST00000437600 SLC1A1P43005 524 aa9.97□□□□□ -0.81
CUX1-206ENST00000437600 FCGRTP55899 365 aa9.97□□□□□ -0.81
CUX1-206ENST00000437600 PSMC1P62191 440 aaKnown RBP9.97□□□□□ -0.81
CUX1-206ENST00000437600 SWT1Q5T5J6 900 aaKnown RBP9.97□□□□□ -0.81
CUX1-206ENST00000437600 TSHZ1Q6ZSZ6 1077 aa9.97□□□□□ -0.81
CUX1-206ENST00000437600 ZC3H18Q86VM9 953 aaKnown RBP9.97□□□□□ -0.81
CUX1-206ENST00000437600 CCDC13Q8IYE1 715 aa9.97□□□□□ -0.81
CUX1-206ENST00000437600 ATXN2LQ8WWM7 1075 aaKnown RBP9.97□□□□□ -0.81
CUX1-206ENST00000437600 HEXIM2Q96MH2 286 aaKnown RBP9.97□□□□□ -0.81
CUX1-206ENST00000437600 CALN1Q9BXU9 219 aa9.97□□□□□ -0.81
CUX1-206ENST00000437600 RPF1Q9H9Y2 349 aaKnown RBP9.97□□□□□ -0.81
CUX1-206ENST00000437600 PTPRHQ9HD43 1115 aa9.97□□□□□ -0.81
CUX1-206ENST00000437600 FGFR1OP2Q9NVK5 253 aa9.97□□□□□ -0.81
CUX1-206ENST00000437600 TCP11X1B4DZS4 312 aa9.96□□□□□ -0.81
CUX1-206ENST00000437600 ZNF865P0CJ78 1059 aaPredicted RBP9.96□□□□□ -0.81
CUX1-206ENST00000437600 TBXAS1P24557 533 aaPredicted RBP9.96□□□□□ -0.81
CUX1-206ENST00000437600 PHKA2P46019 1235 aa9.96□□□□□ -0.81
CUX1-206ENST00000437600 ATP11AP98196 1134 aa9.96□□□□□ -0.81
CUX1-206ENST00000437600 DGKDQ16760 1214 aa9.96□□□□□ -0.81
CUX1-206ENST00000437600 GKAP1Q5VSY0 366 aaPredicted RBP9.96□□□□□ -0.81
CUX1-206ENST00000437600 RHBDF2Q6PJF5 856 aa9.96□□□□□ -0.81
CUX1-206ENST00000437600 NPNTQ6UXI9 565 aa9.96□□□□□ -0.81
CUX1-206ENST00000437600 FAM47EQ6ZV65 393 aa9.96□□□□□ -0.81
CUX1-206ENST00000437600 TLK2Q86UE8 772 aa9.96□□□□□ -0.81
CUX1-206ENST00000437600 ZNF677Q86XU0 584 aa9.96□□□□□ -0.81
CUX1-206ENST00000437600 PHF13Q86YI8 300 aaPredicted RBP9.96□□□□□ -0.81
CUX1-206ENST00000437600 TMEM35BQ8NCS4 154 aa9.96□□□□□ -0.81
CUX1-206ENST00000437600 ZNF296Q8WUU4 475 aaPredicted RBP9.96□□□□□ -0.81
CUX1-206ENST00000437600 PGM2Q96G03 612 aa9.96□□□□□ -0.81
CUX1-206ENST00000437600 SLITRK1Q96PX8 696 aa9.96□□□□□ -0.81
CUX1-206ENST00000437600 KLF6Q99612 283 aaPredicted RBP9.96□□□□□ -0.81
CUX1-206ENST00000437600 APBA2Q99767 749 aa9.96□□□□□ -0.81
CUX1-206ENST00000437600 NIF3L1Q9GZT8 377 aa9.96□□□□□ -0.81
CUX1-206ENST00000437600 C2orf40Q9H1Z8 148 aa9.96□□□□□ -0.81
CUX1-206ENST00000437600 PARP2Q9UGN5 583 aa9.96□□□□□ -0.81
CUX1-206ENST00000437600 NEU2Q9Y3R4 380 aa9.96□□□□□ -0.81
CUX1-206ENST00000437600 NR2E3Q9Y5X4 410 aa9.96□□□□□ -0.81
CUX1-206ENST00000437600 CST8O60676 142 aa9.96□□□□□ -0.82
CUX1-206ENST00000437600 BRAFP15056 766 aa9.96□□□□□ -0.82
CUX1-206ENST00000437600 PECAM1P16284 738 aaPredicted RBP9.96□□□□□ -0.82
CUX1-206ENST00000437600 CCNG2Q16589 344 aa9.96□□□□□ -0.82
CUX1-206ENST00000437600 C15orf59Q2T9L4 293 aaPredicted RBP9.96□□□□□ -0.82
CUX1-206ENST00000437600 ZNF484Q5JVG2 852 aa9.96□□□□□ -0.82
CUX1-206ENST00000437600 NUGGCQ68CJ6 796 aa9.96□□□□□ -0.82
CUX1-206ENST00000437600 CCDC121Q6ZUS5 278 aa9.96□□□□□ -0.82
CUX1-206ENST00000437600 WDR49Q8IV35 697 aa9.96□□□□□ -0.82
CUX1-206ENST00000437600 ZBED8Q8IZ13 594 aa9.96□□□□□ -0.82
CUX1-206ENST00000437600 CACNA2D3Q8IZS8 1091 aa9.96□□□□□ -0.82
CUX1-206ENST00000437600 C4orf33Q8N1A6 199 aa9.96□□□□□ -0.82
CUX1-206ENST00000437600 SPOCK2Q92563 424 aa9.96□□□□□ -0.82
CUX1-206ENST00000437600 FAM81BQ96LP2 452 aa9.96□□□□□ -0.82
CUX1-206ENST00000437600 ZNF317Q96PQ6 595 aaPredicted RBP9.96□□□□□ -0.82
CUX1-206ENST00000437600 TRAIPQ9BWF2 469 aa9.96□□□□□ -0.82
CUX1-206ENST00000437600 PDZD7Q9H5P4 517 aa9.96□□□□□ -0.82
CUX1-206ENST00000437600 METTL5Q9NRN9 209 aaKnown RBP9.96□□□□□ -0.82
CUX1-206ENST00000437600 AGAP1Q9UPQ3 857 aa9.96□□□□□ -0.82
CUX1-206ENST00000437600 TCRBV7S3A2A0A539 114 aa9.96□□□□□ -0.82
CUX1-206ENST00000437600 F5H423 210 aaPredicted RBP9.96□□□□□ -0.82
CUX1-206ENST00000437600 GOLGA8RI6L899 631 aa9.96□□□□□ -0.82
CUX1-206ENST00000437600 ALDH1A1P00352 501 aa9.96□□□□□ -0.82
CUX1-206ENST00000437600 MYL3P08590 195 aa9.96□□□□□ -0.82
CUX1-206ENST00000437600 MYBL1P10243 752 aa9.96□□□□□ -0.82
CUX1-206ENST00000437600 CCND3P30281 292 aaPredicted RBP9.96□□□□□ -0.82
CUX1-206ENST00000437600 POLR2BP30876 1174 aaKnown RBP9.96□□□□□ -0.82
CUX1-206ENST00000437600 TMED2Q15363 201 aa9.96□□□□□ -0.82
CUX1-206ENST00000437600 SMAD1Q15797 465 aaKnown RBP9.96□□□□□ -0.82
CUX1-206ENST00000437600 CNGA2Q16280 664 aa9.96□□□□□ -0.82
CUX1-206ENST00000437600 SCYL2Q6P3W7 929 aa9.96□□□□□ -0.82
CUX1-206ENST00000437600 C6orf89Q6UWU4 347 aa9.96□□□□□ -0.82
CUX1-206ENST00000437600 ZNF513Q8N8E2 541 aaPredicted RBP9.96□□□□□ -0.82
CUX1-206ENST00000437600 C12orf50Q8NA57 414 aaPredicted RBP9.96□□□□□ -0.82
CUX1-206ENST00000437600 ACTL9Q8TC94 416 aa9.96□□□□□ -0.82
CUX1-206ENST00000437600 DNAJB3Q8WWF6 145 aa9.96□□□□□ -0.82
CUX1-206ENST00000437600 VPS37BQ9H9H4 285 aa9.96□□□□□ -0.82
CUX1-206ENST00000437600 GPATCH2LQ9NWQ4 482 aa9.96□□□□□ -0.82
CUX1-206ENST00000437600 IP6K2Q9UHH9 426 aa9.96□□□□□ -0.82
CUX1-206ENST00000437600 PPEF2O14830 753 aa9.95□□□□□ -0.82
CUX1-206ENST00000437600 LIASO43766 372 aa9.95□□□□□ -0.82
CUX1-206ENST00000437600 GAS2O43903 313 aaKnown RBP9.95□□□□□ -0.82
CUX1-206ENST00000437600 ERBB2P04626 1255 aa9.95□□□□□ -0.82
CUX1-206ENST00000437600 PROZP22891 400 aa9.95□□□□□ -0.82
CUX1-206ENST00000437600 SSTR1P30872 391 aa9.95□□□□□ -0.82
CUX1-206ENST00000437600 MAGEA4P43358 317 aa9.95□□□□□ -0.82
CUX1-206ENST00000437600 GSCP56915 257 aaPredicted RBP9.95□□□□□ -0.82
CUX1-206ENST00000437600 MCCD1P59942 119 aaPredicted RBP9.95□□□□□ -0.82
CUX1-206ENST00000437600 SLC10A6Q3KNW5 377 aa9.95□□□□□ -0.82
CUX1-206ENST00000437600 ANKRD22Q5VYY1 191 aa9.95□□□□□ -0.82
CUX1-206ENST00000437600 VSTM1Q6UX27 236 aa9.95□□□□□ -0.82
CUX1-206ENST00000437600 SPOCD1Q6ZMY3 1216 aa9.95□□□□□ -0.82
CUX1-206ENST00000437600 FAM129AQ9BZQ8 928 aa9.95□□□□□ -0.82
CUX1-206ENST00000437600 FAM49BQ9NUQ9 324 aa9.95□□□□□ -0.82
CUX1-206ENST00000437600 WHRNQ9P202 907 aa9.95□□□□□ -0.82
CUX1-206ENST00000437600 PCDH10Q9P2E7 1040 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms