RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 PPM1AP35813 382 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 LHX1P48742 406 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 RGS7P49802 495 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 MAP3K7CLP57077 242 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 GFPT1Q06210 699 aaPredicted RBP4.27□□□□□ -1.73
LIG4-201ENST00000356922 RAB6CQ53S08 254 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 ANKS3Q6ZW76 656 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 CACNA2D4Q7Z3S7 1137 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 SCUBE3Q8IX30 993 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 TMEM86AQ8N2M4 240 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 GIPC2Q8TF65 315 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 SLC35F5Q8WV83 523 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 SPAG5Q96R06 1193 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 CPXM1Q96SM3 734 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 ZMYND15Q9H091 742 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 RAB6CQ9H0N0 254 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 MTMR10Q9NXD2 777 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 CLEC1BQ9P126 229 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 WDR3Q9UNX4 943 aaKnown RBP eCLIP4.27□□□□□ -1.73
LIG4-201ENST00000356922 LZTS1Q9Y250 596 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 REXO2Q9Y3B8 237 aaKnown RBP4.27□□□□□ -1.73
LIG4-201ENST00000356922 BACE2Q9Y5Z0 518 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 DUSP10Q9Y6W6 482 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 PTPRDP23468 1912 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 MYH10P35580 1976 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 A0A1W2PPC1 479 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 TNFRSF10BO14763 440 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 URODP06132 367 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 GJA1P17302 382 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 TBXAS1P24557 533 aaPredicted RBP4.27□□□□□ -1.73
LIG4-201ENST00000356922 KLRC2P26717 231 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 HNRNPH3P31942 346 aaKnown RBP4.27□□□□□ -1.73
LIG4-201ENST00000356922 EIF4A3P38919 411 aaKnown RBP4.27□□□□□ -1.73
LIG4-201ENST00000356922 CCR2P41597 374 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 NTHL1P78549 312 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 RAB33AQ14088 237 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 BHLHA9Q7RTU4 235 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 TMEM150AQ86TG1 271 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 CCDC150Q8NCX0 1101 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 PPM1EQ8WY54 764 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 MRPL38Q96DV4 380 aaKnown RBP4.27□□□□□ -1.73
LIG4-201ENST00000356922 TRIM7Q9C029 511 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 OSER1Q9NX31 292 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 SALL4Q9UJQ4 1053 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 CDH9Q9ULB4 789 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 AKR1B15C9JRZ8 316 aaPredicted RBP4.27□□□□□ -1.73
LIG4-201ENST00000356922 THAP12O43422 761 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 CBFA2T2O43439 604 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 UNGP13051 313 aaPredicted RBP4.27□□□□□ -1.73
LIG4-201ENST00000356922 CPB1P15086 417 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 HMGA1P17096 107 aaKnown RBP4.27□□□□□ -1.73
LIG4-201ENST00000356922 STAT1P42224 750 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 ZXDBP98169 803 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 PTP4A2Q12974 167 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 CNGA2Q16280 664 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 MEA1Q16626 185 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 SYCE2Q6PIF2 218 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 LCLAT1Q6UWP7 414 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 HFE2Q6ZVN8 426 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 UNC93AQ86WB7 457 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 CPNE8Q86YQ8 564 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 HS6ST3Q8IZP7 471 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 MICALL1Q8N3F8 863 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 OR8K1Q8NGG5 319 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 SECISBP2LQ93073 1101 aaKnown RBP4.27□□□□□ -1.73
LIG4-201ENST00000356922 HNRNPABQ99729 332 aaKnown RBP4.27□□□□□ -1.73
LIG4-201ENST00000356922 CALCOCO1Q9P1Z2 691 aa4.27□□□□□ -1.73
LIG4-201ENST00000356922 ATMINO43313 823 aaPredicted RBP4.26□□□□□ -1.73
LIG4-201ENST00000356922 TBX10O75333 385 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 CDC25BP30305 580 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 CCZ1BP86790 482 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 CCZ1P86791 482 aaPredicted RBP4.26□□□□□ -1.73
LIG4-201ENST00000356922 CLUL1Q15846 466 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 GOLGA7BQ2TAP0 167 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 PTPN20Q4JDL3 420 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 STXBP5Q5T5C0 1151 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 CYP4A22Q5TCH4 519 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 SFMBT2Q5VUG0 894 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 DAB2IPQ5VWQ8 1189 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 ZNF280DQ6N043 979 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 TRNP1Q6NT89 227 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 TMC5Q6UXY8 1006 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 TOGARAM2Q6ZUX3 1019 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 FAM35AQ86V20 835 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 PIGZQ86VD9 579 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 LRRC8AQ8IWT6 810 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 C17orf53Q8N3J3 647 aaPredicted RBP4.26□□□□□ -1.73
LIG4-201ENST00000356922 C1orf131Q8NDD1 294 aaKnown RBP4.26□□□□□ -1.73
LIG4-201ENST00000356922 SLC7A14Q8TBB6 771 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 ZNF707Q96C28 371 aaPredicted RBP4.26□□□□□ -1.73
LIG4-201ENST00000356922 TCEAL4Q96EI5 215 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 AGPAT1Q99943 283 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 DESI2Q9BSY9 194 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 TLE6Q9H808 572 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 NHEJ1Q9H9Q4 299 aaPredicted RBP4.26□□□□□ -1.73
LIG4-201ENST00000356922 CYP4F11Q9HBI6 524 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 CSNK1G1Q9HCP0 422 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 ZNF334Q9HCZ1 680 aaPredicted RBP4.26□□□□□ -1.73
LIG4-201ENST00000356922 KRT82Q9NSB4 513 aa4.26□□□□□ -1.73
LIG4-201ENST00000356922 FNIP2Q9P278 1114 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms