RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 LDHAP00338 332 aaKnown RBP4.03□□□□□ -1.76
HMGB1-201ENST00000326004 ADH4P08319 380 aa4.03□□□□□ -1.76
HMGB1-201ENST00000326004 HKR1P10072 659 aa4.03□□□□□ -1.76
HMGB1-201ENST00000326004 HARSP12081 509 aaKnown RBP4.03□□□□□ -1.76
HMGB1-201ENST00000326004 INSRRP14616 1297 aa4.03□□□□□ -1.76
HMGB1-201ENST00000326004 IDEP14735 1019 aa4.03□□□□□ -1.76
HMGB1-201ENST00000326004 ABCB4P21439 1286 aa4.03□□□□□ -1.76
HMGB1-201ENST00000326004 KCNA3P22001 575 aa4.03□□□□□ -1.76
HMGB1-201ENST00000326004 ZEB1P37275 1124 aaPredicted RBP4.03□□□□□ -1.76
HMGB1-201ENST00000326004 AVPR1BP47901 424 aa4.03□□□□□ -1.76
HMGB1-201ENST00000326004 PTDSS1P48651 473 aaKnown RBP4.03□□□□□ -1.76
HMGB1-201ENST00000326004 PDE6CP51160 858 aa4.03□□□□□ -1.76
HMGB1-201ENST00000326004 PRKAG1P54619 331 aa4.03□□□□□ -1.76
HMGB1-201ENST00000326004 SF3B3Q15393 1217 aaKnown RBP4.03□□□□□ -1.76
HMGB1-201ENST00000326004 NPY5RQ15761 445 aa4.03□□□□□ -1.76
HMGB1-201ENST00000326004 SLC35G1Q2M3R5 365 aa4.03□□□□□ -1.76
HMGB1-201ENST00000326004 ZXDCQ2QGD7 858 aaPredicted RBP4.03□□□□□ -1.76
HMGB1-201ENST00000326004 NBPF8Q3BBV2 869 aa4.03□□□□□ -1.76
HMGB1-201ENST00000326004 CERCAMQ5T4B2 595 aa4.03□□□□□ -1.76
HMGB1-201ENST00000326004 VPS53Q5VIR6 699 aa4.03□□□□□ -1.76
HMGB1-201ENST00000326004 CACHD1Q5VU97 1274 aa4.03□□□□□ -1.76
HMGB1-201ENST00000326004 PLAG1Q6DJT9 500 aa4.03□□□□□ -1.76
HMGB1-201ENST00000326004 FCRL6Q6DN72 434 aa4.03□□□□□ -1.76
HMGB1-201ENST00000326004 RGS7BPQ6MZT1 257 aaPredicted RBP4.03□□□□□ -1.76
HMGB1-201ENST00000326004 MZT2AQ6P582 158 aa4.03□□□□□ -1.76
HMGB1-201ENST00000326004 VWA1Q6PCB0 445 aa4.03□□□□□ -1.76
HMGB1-201ENST00000326004 CRIP3Q6Q6R5 217 aa4.03□□□□□ -1.76
HMGB1-201ENST00000326004 KRT73Q86Y46 540 aa4.03□□□□□ -1.76
HMGB1-201ENST00000326004 SLC15A3Q8IY34 581 aa4.03□□□□□ -1.76
HMGB1-201ENST00000326004 SPARTQ8N0X7 666 aa4.03□□□□□ -1.76
HMGB1-201ENST00000326004 TXLNBQ8N3L3 684 aa4.03□□□□□ -1.76
HMGB1-201ENST00000326004 LCORLQ8N3X6 602 aa4.03□□□□□ -1.76
HMGB1-201ENST00000326004 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP4.03□□□□□ -1.76
HMGB1-201ENST00000326004 CCDC150Q8NCX0 1101 aa4.03□□□□□ -1.76
HMGB1-201ENST00000326004 SLC30A5Q8TAD4 765 aa4.03□□□□□ -1.76
HMGB1-201ENST00000326004 KIAA1191Q96A73 305 aa4.03□□□□□ -1.76
HMGB1-201ENST00000326004 PGBD1Q96JS3 809 aa4.03□□□□□ -1.76
HMGB1-201ENST00000326004 COQ10AQ96MF6 247 aa4.03□□□□□ -1.76
HMGB1-201ENST00000326004 MLST8Q9BVC4 326 aa4.03□□□□□ -1.76
HMGB1-201ENST00000326004 ACTRT3Q9BYD9 372 aa4.03□□□□□ -1.76
HMGB1-201ENST00000326004 TPSD1Q9BZJ3 242 aa4.03□□□□□ -1.76
HMGB1-201ENST00000326004 ZCWPW1Q9H0M4 648 aa4.03□□□□□ -1.76
HMGB1-201ENST00000326004 CXorf36Q9H7Y0 433 aa4.03□□□□□ -1.76
HMGB1-201ENST00000326004 MMRN2Q9H8L6 949 aa4.03□□□□□ -1.76
HMGB1-201ENST00000326004 HEYLQ9NQ87 328 aaPredicted RBP4.03□□□□□ -1.76
HMGB1-201ENST00000326004 TRMT13Q9NUP7 481 aaKnown RBP4.03□□□□□ -1.76
HMGB1-201ENST00000326004 TBC1D23Q9NUY8 699 aa4.03□□□□□ -1.76
HMGB1-201ENST00000326004 DNMT3BQ9UBC3 853 aaKnown RBP4.03□□□□□ -1.76
HMGB1-201ENST00000326004 DKK4Q9UBT3 224 aa4.03□□□□□ -1.76
HMGB1-201ENST00000326004 SSX2IPQ9Y2D8 614 aa4.03□□□□□ -1.76
HMGB1-201ENST00000326004 LRCH1Q9Y2L9 728 aa4.03□□□□□ -1.76
HMGB1-201ENST00000326004 DAAM1Q9Y4D1 1078 aa4.03□□□□□ -1.76
HMGB1-201ENST00000326004 CEP83Q9Y592 693 aa4.03□□□□□ -1.76
HMGB1-201ENST00000326004 NPIPB8E9PQR5 432 aa4.02□□□□□ -1.77
HMGB1-201ENST00000326004 H7C4K7 107 aa4.02□□□□□ -1.77
HMGB1-201ENST00000326004 hCG_1984214I3L0E3 225 aa4.02□□□□□ -1.77
HMGB1-201ENST00000326004 CD3EAPO15446 510 aaKnown RBP4.02□□□□□ -1.77
HMGB1-201ENST00000326004 NARSO43776 548 aaKnown RBP4.02□□□□□ -1.77
HMGB1-201ENST00000326004 TLR5O60602 858 aa4.02□□□□□ -1.77
HMGB1-201ENST00000326004 PIAS2O75928 621 aa4.02□□□□□ -1.77
HMGB1-201ENST00000326004 CSF1RP07333 972 aa4.02□□□□□ -1.77
HMGB1-201ENST00000326004 TGM1P22735 817 aa4.02□□□□□ -1.77
HMGB1-201ENST00000326004 EEF1GP26641 437 aaKnown RBP4.02□□□□□ -1.77
HMGB1-201ENST00000326004 PPM1AP35813 382 aa4.02□□□□□ -1.77
HMGB1-201ENST00000326004 BUD31P41223 144 aaPredicted RBP4.02□□□□□ -1.77
HMGB1-201ENST00000326004 TECP42680 631 aa4.02□□□□□ -1.77
HMGB1-201ENST00000326004 HSPA7P48741 367 aa4.02□□□□□ -1.77
HMGB1-201ENST00000326004 COPAP53621 1224 aa4.02□□□□□ -1.77
HMGB1-201ENST00000326004 KRTAP10-2P60368 255 aa4.02□□□□□ -1.77
HMGB1-201ENST00000326004 ABHD18Q0P651 414 aa4.02□□□□□ -1.77
HMGB1-201ENST00000326004 KRT72Q14CN4 511 aa4.02□□□□□ -1.77
HMGB1-201ENST00000326004 PTPRRQ15256 657 aa4.02□□□□□ -1.77
HMGB1-201ENST00000326004 MPEG1Q2M385 716 aa4.02□□□□□ -1.77
HMGB1-201ENST00000326004 ZNF750Q32MQ0 723 aa4.02□□□□□ -1.77
HMGB1-201ENST00000326004 C1orf228Q6PIY5 440 aa4.02□□□□□ -1.77
HMGB1-201ENST00000326004 DTX2Q86UW9 622 aa4.02□□□□□ -1.77
HMGB1-201ENST00000326004 MYLK4Q86YV6 388 aaPredicted RBP4.02□□□□□ -1.77
HMGB1-201ENST00000326004 ENAHQ8N8S7 591 aaPredicted RBP4.02□□□□□ -1.77
HMGB1-201ENST00000326004 CYP2W1Q8TAV3 490 aa4.02□□□□□ -1.77
HMGB1-201ENST00000326004 ZNF384Q8TF68 577 aa4.02□□□□□ -1.77
HMGB1-201ENST00000326004 LPIN2Q92539 896 aa4.02□□□□□ -1.77
HMGB1-201ENST00000326004 PPP2R3CQ969Q6 453 aa4.02□□□□□ -1.77
HMGB1-201ENST00000326004 ZNF566Q969W8 418 aa4.02□□□□□ -1.77
HMGB1-201ENST00000326004 ZNF668Q96K58 619 aaPredicted RBP4.02□□□□□ -1.77
HMGB1-201ENST00000326004 AIFM2Q9BRQ8 373 aa4.02□□□□□ -1.77
HMGB1-201ENST00000326004 ALG8Q9BVK2 526 aa4.02□□□□□ -1.77
HMGB1-201ENST00000326004 MAGEB5Q9BZ81 275 aa4.02□□□□□ -1.77
HMGB1-201ENST00000326004 TRIM5Q9C035 493 aa4.02□□□□□ -1.77
HMGB1-201ENST00000326004 CYP4F11Q9HBI6 524 aa4.02□□□□□ -1.77
HMGB1-201ENST00000326004 TM7SF3Q9NS93 570 aa4.02□□□□□ -1.77
HMGB1-201ENST00000326004 SERTAD3Q9UJW9 196 aa4.02□□□□□ -1.77
HMGB1-201ENST00000326004 TBC1D30Q9Y2I9 924 aa4.02□□□□□ -1.77
HMGB1-201ENST00000326004 MRPS17Q9Y2R5 130 aaKnown RBP4.02□□□□□ -1.77
HMGB1-201ENST00000326004 MAST3O60307 1309 aa4.01□□□□□ -1.77
HMGB1-201ENST00000326004 ADAMTS3O15072 1205 aa4.01□□□□□ -1.77
HMGB1-201ENST00000326004 YY2O15391 372 aa4.01□□□□□ -1.77
HMGB1-201ENST00000326004 SLC16A3O15427 465 aaKnown RBP4.01□□□□□ -1.77
HMGB1-201ENST00000326004 MPPED1O15442 326 aa4.01□□□□□ -1.77
HMGB1-201ENST00000326004 KCNQ3O43525 872 aa4.01□□□□□ -1.77
HMGB1-201ENST00000326004 RGS10O43665 173 aa4.01□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms