RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	ZNF268	Q14587	947 aa	Predicted RBP	12.45	□□□□□ -0.42
CLN6-223	ENST00000637823	MDH1B	Q5I0G3	518 aa		12.45	□□□□□ -0.42
CLN6-223	ENST00000637823	KIAA0319	Q5VV43	1072 aa		12.45	□□□□□ -0.42
CLN6-223	ENST00000637823	PLEKHA7	Q6IQ23	1121 aa		12.45	□□□□□ -0.42
CLN6-223	ENST00000637823	FAM171B	Q6P995	826 aa		12.45	□□□□□ -0.42
CLN6-223	ENST00000637823	ZNF365	Q70YC5	407 aa		12.45	□□□□□ -0.42
CLN6-223	ENST00000637823	OTOP2	Q7RTS6	562 aa		12.45	□□□□□ -0.42
CLN6-223	ENST00000637823	SLFN11	Q7Z7L1	901 aa		12.45	□□□□□ -0.42
CLN6-223	ENST00000637823	TTC30A	Q86WT1	665 aa		12.45	□□□□□ -0.42
CLN6-223	ENST00000637823	CMTR2	Q8IYT2	770 aa	Known RBP	12.45	□□□□□ -0.42
CLN6-223	ENST00000637823	LRRC57	Q8N9N7	239 aa		12.45	□□□□□ -0.42
CLN6-223	ENST00000637823	MYCBPAP	Q8TBZ2	947 aa		12.45	□□□□□ -0.42
CLN6-223	ENST00000637823	SLC35F5	Q8WV83	523 aa		12.45	□□□□□ -0.42
CLN6-223	ENST00000637823	C18orf8	Q96DM3	657 aa		12.45	□□□□□ -0.42
CLN6-223	ENST00000637823	RTP3	Q9BQQ7	232 aa		12.45	□□□□□ -0.42
CLN6-223	ENST00000637823	C11orf70	Q9BRQ4	267 aa		12.45	□□□□□ -0.42
CLN6-223	ENST00000637823	TUBB2B	Q9BVA1	445 aa		12.45	□□□□□ -0.42
CLN6-223	ENST00000637823	NUP85	Q9BW27	656 aa		12.45	□□□□□ -0.42
CLN6-223	ENST00000637823	DUSP16	Q9BY84	665 aa		12.45	□□□□□ -0.42
CLN6-223	ENST00000637823	OSGEP	Q9NPF4	335 aa		12.45	□□□□□ -0.42
CLN6-223	ENST00000637823	CRTAC1	Q9NQ79	661 aa		12.45	□□□□□ -0.42
CLN6-223	ENST00000637823	CYLD	Q9NQC7	956 aa		12.45	□□□□□ -0.42
CLN6-223	ENST00000637823	PARVA	Q9NVD7	372 aa		12.45	□□□□□ -0.42
CLN6-223	ENST00000637823	WDR35	Q9P2L0	1181 aa		12.45	□□□□□ -0.42
CLN6-223	ENST00000637823	COG5	Q9UP83	839 aa		12.45	□□□□□ -0.42
CLN6-223	ENST00000637823	SCIN	Q9Y6U3	715 aa		12.45	□□□□□ -0.42
CLN6-223	ENST00000637823	COL4A6	Q14031	1691 aa		12.45	□□□□□ -0.42
CLN6-223	ENST00000637823	KIAA1671	Q9BY89	1806 aa		12.44	□□□□□ -0.42
CLN6-223	ENST00000637823	SF3B1	O75533	1304 aa	Known RBP eCLIP	12.44	□□□□□ -0.42	8e-9	■■■■■ 155.1
CLN6-223	ENST00000637823	FANCG	O15287	622 aa		12.44	□□□□□ -0.42
CLN6-223	ENST00000637823	ATMIN	O43313	823 aa	Predicted RBP	12.44	□□□□□ -0.42
CLN6-223	ENST00000637823	FGFR3	P22607	806 aa		12.44	□□□□□ -0.42
CLN6-223	ENST00000637823	ADORA2B	P29275	332 aa		12.44	□□□□□ -0.42
CLN6-223	ENST00000637823	BCAT1	P54687	386 aa		12.44	□□□□□ -0.42
CLN6-223	ENST00000637823	GSC	P56915	257 aa	Predicted RBP	12.44	□□□□□ -0.42
CLN6-223	ENST00000637823	SLC8A3	P57103	927 aa		12.44	□□□□□ -0.42
CLN6-223	ENST00000637823	PSMC1	P62191	440 aa	Known RBP	12.44	□□□□□ -0.42
CLN6-223	ENST00000637823	TSPY1	Q01534	308 aa		12.44	□□□□□ -0.42
CLN6-223	ENST00000637823	PLCB3	Q01970	1234 aa		12.44	□□□□□ -0.42
CLN6-223	ENST00000637823	TAP1	Q03518	808 aa		12.44	□□□□□ -0.42
CLN6-223	ENST00000637823	YWHAH	Q04917	246 aa	Predicted RBP	12.44	□□□□□ -0.42
CLN6-223	ENST00000637823	PDCL	Q13371	301 aa		12.44	□□□□□ -0.42
CLN6-223	ENST00000637823	MAMLD1	Q13495	774 aa		12.44	□□□□□ -0.42
CLN6-223	ENST00000637823	MAPRE1	Q15691	268 aa	Known RBP	12.44	□□□□□ -0.42
CLN6-223	ENST00000637823	INTS6L	Q5JSJ4	861 aa	Known RBP	12.44	□□□□□ -0.42
CLN6-223	ENST00000637823	TMEM240	Q5SV17	173 aa		12.44	□□□□□ -0.42
CLN6-223	ENST00000637823	PAPD7	Q5XG87	772 aa	Known RBP	12.44	□□□□□ -0.42
CLN6-223	ENST00000637823	PSRC1	Q6PGN9	363 aa	Predicted RBP	12.44	□□□□□ -0.42
CLN6-223	ENST00000637823	DAAM2	Q86T65	1068 aa		12.44	□□□□□ -0.42
CLN6-223	ENST00000637823	FUK	Q8N0W3	1084 aa		12.44	□□□□□ -0.42
CLN6-223	ENST00000637823	ZNF564	Q8TBZ8	553 aa	Predicted RBP	12.44	□□□□□ -0.42
CLN6-223	ENST00000637823	SLC2A14	Q8TDB8	520 aa		12.44	□□□□□ -0.42
CLN6-223	ENST00000637823	MED10	Q9BTT4	135 aa		12.44	□□□□□ -0.42
CLN6-223	ENST00000637823	SLC4A5	Q9BY07	1137 aa		12.44	□□□□□ -0.42
CLN6-223	ENST00000637823	B3GNT5	Q9BYG0	378 aa		12.44	□□□□□ -0.42
CLN6-223	ENST00000637823	RC3H2	Q9HBD1	1191 aa	Known RBP	12.44	□□□□□ -0.42
CLN6-223	ENST00000637823	MARCH5	Q9NX47	278 aa		12.44	□□□□□ -0.42
CLN6-223	ENST00000637823	LCMT1	Q9UIC8	334 aa		12.44	□□□□□ -0.42
CLN6-223	ENST00000637823	MYBPHL	A2RUH7	354 aa		12.43	□□□□□ -0.42
CLN6-223	ENST00000637823	ZBBX	A8MT70	800 aa		12.43	□□□□□ -0.42
CLN6-223	ENST00000637823	BUB1B	O60566	1050 aa	Predicted RBP	12.43	□□□□□ -0.42
CLN6-223	ENST00000637823	URI1	O94763	535 aa	Predicted RBP	12.43	□□□□□ -0.42
CLN6-223	ENST00000637823	PRLR	P16471	622 aa		12.43	□□□□□ -0.42
CLN6-223	ENST00000637823	TKT	P29401	623 aa	Known RBP	12.43	□□□□□ -0.42
CLN6-223	ENST00000637823	ACADSB	P45954	432 aa		12.43	□□□□□ -0.42
CLN6-223	ENST00000637823	RPL34	P49207	117 aa	Known RBP	12.43	□□□□□ -0.42
CLN6-223	ENST00000637823	PDE4C	Q08493	712 aa		12.43	□□□□□ -0.42
CLN6-223	ENST00000637823	MRPL58	Q14197	206 aa	Known RBP	12.43	□□□□□ -0.42
CLN6-223	ENST00000637823	BTG3	Q14201	252 aa	Predicted RBP	12.43	□□□□□ -0.42
CLN6-223	ENST00000637823	PTPN20	Q4JDL3	420 aa		12.43	□□□□□ -0.42
CLN6-223	ENST00000637823	C2CD6	Q53TS8	623 aa		12.43	□□□□□ -0.42
CLN6-223	ENST00000637823	SPOUT1	Q5T280	376 aa	Known RBP	12.43	□□□□□ -0.42
CLN6-223	ENST00000637823	MEI1	Q5TIA1	1274 aa		12.43	□□□□□ -0.42
CLN6-223	ENST00000637823	FAM171A1	Q5VUB5	890 aa		12.43	□□□□□ -0.42
CLN6-223	ENST00000637823	C11orf63	Q6NUN7	778 aa		12.43	□□□□□ -0.42
CLN6-223	ENST00000637823	PMF1	Q6P1K2	205 aa		12.43	□□□□□ -0.42
CLN6-223	ENST00000637823	FAM117B	Q6P1L5	589 aa		12.43	□□□□□ -0.42
CLN6-223	ENST00000637823	DNAJC24	Q6P3W2	148 aa		12.43	□□□□□ -0.42
CLN6-223	ENST00000637823	FUT10	Q6P4F1	479 aa		12.43	□□□□□ -0.42
CLN6-223	ENST00000637823	PAQR9	Q6ZVX9	377 aa		12.43	□□□□□ -0.42
CLN6-223	ENST00000637823	TMEM110	Q86TL2	294 aa		12.43	□□□□□ -0.42
CLN6-223	ENST00000637823	XYLT1	Q86Y38	959 aa		12.43	□□□□□ -0.42
CLN6-223	ENST00000637823	C3orf20	Q8ND61	904 aa		12.43	□□□□□ -0.42
CLN6-223	ENST00000637823	FEZF2	Q8TBJ5	459 aa		12.43	□□□□□ -0.42
CLN6-223	ENST00000637823	IPO4	Q8TEX9	1081 aa	Known RBP	12.43	□□□□□ -0.42
CLN6-223	ENST00000637823	HERVK_113	Q902F9	699 aa		12.43	□□□□□ -0.42
CLN6-223	ENST00000637823	MCRS1	Q96EZ8	462 aa		12.43	□□□□□ -0.42
CLN6-223	ENST00000637823	ZNF558	Q96NG5	402 aa		12.43	□□□□□ -0.42
CLN6-223	ENST00000637823	CPXM1	Q96SM3	734 aa		12.43	□□□□□ -0.42
CLN6-223	ENST00000637823	PKMYT1	Q99640	499 aa		12.43	□□□□□ -0.42
CLN6-223	ENST00000637823	OXCT2	Q9BYC2	517 aa	Predicted RBP	12.43	□□□□□ -0.42
CLN6-223	ENST00000637823	GPR62	Q9BZJ7	368 aa		12.43	□□□□□ -0.42
CLN6-223	ENST00000637823	UBXN6	Q9BZV1	441 aa		12.43	□□□□□ -0.42
CLN6-223	ENST00000637823	SYNC	Q9H7C4	482 aa		12.43	□□□□□ -0.42
CLN6-223	ENST00000637823	ABCB6	Q9NP58	842 aa		12.43	□□□□□ -0.42
CLN6-223	ENST00000637823	HCST	Q9UBK5	93 aa		12.43	□□□□□ -0.42
CLN6-223	ENST00000637823	CHORDC1	Q9UHD1	332 aa	Predicted RBP	12.43	□□□□□ -0.42
CLN6-223	ENST00000637823	AMFR	Q9UKV5	643 aa		12.43	□□□□□ -0.42
CLN6-223	ENST00000637823	TCRBV5S1A1T	A0A578	114 aa		12.42	□□□□□ -0.42
CLN6-223	ENST00000637823	OR6C75	A6NL08	312 aa		12.42	□□□□□ -0.42

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