RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 LDHAP00338 332 aaKnown RBP12.5□□□□□ -0.41
USP3-220ENST00000561381 HOXD13P35453 343 aa12.5□□□□□ -0.41
USP3-220ENST00000561381 NASPP49321 788 aaPredicted RBP12.5□□□□□ -0.41
USP3-220ENST00000561381 PLCB2Q00722 1185 aa12.5□□□□□ -0.41
USP3-220ENST00000561381 CCINQ13939 588 aa12.5□□□□□ -0.41
USP3-220ENST00000561381 SOWAHAQ2M3V2 549 aa12.5□□□□□ -0.41
USP3-220ENST00000561381 ITPRIPL2Q3MIP1 535 aa12.5□□□□□ -0.41
USP3-220ENST00000561381 INTS6LQ5JSJ4 861 aaKnown RBP12.5□□□□□ -0.41
USP3-220ENST00000561381 PKN3Q6P5Z2 889 aa12.5□□□□□ -0.41
USP3-220ENST00000561381 C1orf228Q6PIY5 440 aa12.5□□□□□ -0.41
USP3-220ENST00000561381 PRR23BQ6ZRT6 265 aa12.5□□□□□ -0.41
USP3-220ENST00000561381 LRRC52Q8N7C0 313 aa12.5□□□□□ -0.41
USP3-220ENST00000561381 LINC00301Q8NCQ3 95 aa12.5□□□□□ -0.41
USP3-220ENST00000561381 OR5B17Q8NGF7 314 aa12.5□□□□□ -0.41
USP3-220ENST00000561381 CACTINQ8WUQ7 758 aaKnown RBP12.5□□□□□ -0.41
USP3-220ENST00000561381 SECISBP2LQ93073 1101 aaKnown RBP12.5□□□□□ -0.41
USP3-220ENST00000561381 RNF166Q96A37 237 aaPredicted RBP12.5□□□□□ -0.41
USP3-220ENST00000561381 CHFRQ96EP1 664 aa12.5□□□□□ -0.41
USP3-220ENST00000561381 INTS4Q96HW7 963 aaKnown RBP12.5□□□□□ -0.41
USP3-220ENST00000561381 FAM83CQ9BQN1 747 aa12.5□□□□□ -0.41
USP3-220ENST00000561381 ACBD6Q9BR61 282 aa12.5□□□□□ -0.41
USP3-220ENST00000561381 EBF3Q9H4W6 596 aa12.5□□□□□ -0.41
USP3-220ENST00000561381 THG1LQ9NWX6 298 aaKnown RBP12.5□□□□□ -0.41
USP3-220ENST00000561381 GDAP2Q9NXN4 497 aa12.5□□□□□ -0.41
USP3-220ENST00000561381 GMEB2Q9UKD1 530 aa12.5□□□□□ -0.41
USP3-220ENST00000561381 ITGA11Q9UKX5 1188 aa12.5□□□□□ -0.41
USP3-220ENST00000561381 USP18Q9UMW8 372 aa12.5□□□□□ -0.41
USP3-220ENST00000561381 MORC2Q9Y6X9 1032 aaPredicted RBP12.5□□□□□ -0.41
USP3-220ENST00000561381 OBSL1O75147 1896 aa12.5□□□□□ -0.41
USP3-220ENST00000561381 ZNF638Q14966 1978 aaKnown RBP12.5□□□□□ -0.41
USP3-220ENST00000561381 ATG2BQ96BY7 2078 aa12.5□□□□□ -0.41
USP3-220ENST00000561381 STX6O43752 255 aa12.49□□□□□ -0.41
USP3-220ENST00000561381 ATP2C2O75185 946 aa12.49□□□□□ -0.41
USP3-220ENST00000561381 TMEM191BP0C7N4 346 aa12.49□□□□□ -0.41
USP3-220ENST00000561381 CSH1P0DML2 217 aa12.49□□□□□ -0.41
USP3-220ENST00000561381 CSH2P0DML3 217 aa12.49□□□□□ -0.41
USP3-220ENST00000561381 ARSAP15289 507 aa12.49□□□□□ -0.41
USP3-220ENST00000561381 AVPR1AP37288 418 aa12.49□□□□□ -0.41
USP3-220ENST00000561381 RBP5P82980 135 aa12.49□□□□□ -0.41
USP3-220ENST00000561381 SPEM2Q0P670 501 aa12.49□□□□□ -0.41
USP3-220ENST00000561381 ALCAMQ13740 583 aa12.49□□□□□ -0.41
USP3-220ENST00000561381 STK38Q15208 465 aa12.49□□□□□ -0.41
USP3-220ENST00000561381 NFE2Q16621 373 aaPredicted RBP12.49□□□□□ -0.41
USP3-220ENST00000561381 DGKKQ5KSL6 1271 aa12.49□□□□□ -0.41
USP3-220ENST00000561381 NAIF1Q69YI7 327 aaPredicted RBP12.49□□□□□ -0.41
USP3-220ENST00000561381 CBWD2Q8IUF1 395 aa12.49□□□□□ -0.41
USP3-220ENST00000561381 CCDC65Q8IXS2 484 aa12.49□□□□□ -0.41
USP3-220ENST00000561381 ADGRF2Q8IZF7 708 aa12.49□□□□□ -0.41
USP3-220ENST00000561381 GPD1LQ8N335 351 aa12.49□□□□□ -0.41
USP3-220ENST00000561381 LEO1Q8WVC0 666 aaPredicted RBP12.49□□□□□ -0.41
USP3-220ENST00000561381 TMEM206Q9H813 350 aa12.49□□□□□ -0.41
USP3-220ENST00000561381 TDP1Q9NUW8 608 aa12.49□□□□□ -0.41
USP3-220ENST00000561381 TFIP11Q9UBB9 837 aaKnown RBP12.49□□□□□ -0.41
USP3-220ENST00000561381 RAB23Q9ULC3 237 aa12.49□□□□□ -0.41
USP3-220ENST00000561381 SDK1Q7Z5N4 2213 aa12.49□□□□□ -0.41
USP3-220ENST00000561381 GABRDO14764 452 aa12.48□□□□□ -0.41
USP3-220ENST00000561381 NOL4O94818 638 aa12.48□□□□□ -0.41
USP3-220ENST00000561381 PAPSS2O95340 614 aaPredicted RBP12.48□□□□□ -0.41
USP3-220ENST00000561381 LMO2P25791 158 aa12.48□□□□□ -0.41
USP3-220ENST00000561381 ATXN1P54253 815 aaKnown RBP12.48□□□□□ -0.41
USP3-220ENST00000561381 PSMC1P62191 440 aaKnown RBP12.48□□□□□ -0.41
USP3-220ENST00000561381 MYL7Q01449 175 aa12.48□□□□□ -0.41
USP3-220ENST00000561381 RUNX3Q13761 415 aa12.48□□□□□ -0.41
USP3-220ENST00000561381 SIM2Q14190 667 aaPredicted RBP12.48□□□□□ -0.41
USP3-220ENST00000561381 E2F4Q16254 413 aa12.48□□□□□ -0.41
USP3-220ENST00000561381 FOXD4L5Q5VV16 416 aaPredicted RBP12.48□□□□□ -0.41
USP3-220ENST00000561381 LAIR1Q6GTX8 287 aa12.48□□□□□ -0.41
USP3-220ENST00000561381 FSTL4Q6MZW2 842 aa12.48□□□□□ -0.41
USP3-220ENST00000561381 MON1AQ86VX9 555 aa12.48□□□□□ -0.41
USP3-220ENST00000561381 TMEM86AQ8N2M4 240 aa12.48□□□□□ -0.41
USP3-220ENST00000561381 TOP6BLQ8N6T0 577 aa12.48□□□□□ -0.41
USP3-220ENST00000561381 GPR161Q8N6U8 529 aaKnown RBP12.48□□□□□ -0.41
USP3-220ENST00000561381 KBTBD7Q8WVZ9 684 aa12.48□□□□□ -0.41
USP3-220ENST00000561381 FOXD4L4Q8WXT5 416 aaPredicted RBP12.48□□□□□ -0.41
USP3-220ENST00000561381 MRPS31Q92665 395 aaKnown RBP12.48□□□□□ -0.41
USP3-220ENST00000561381 DHX58Q96C10 678 aa12.48□□□□□ -0.41
USP3-220ENST00000561381 HPDLQ96IR7 371 aa12.48□□□□□ -0.41
USP3-220ENST00000561381 SLC22A12Q96S37 553 aa12.48□□□□□ -0.41
USP3-220ENST00000561381 CYP2S1Q96SQ9 504 aa12.48□□□□□ -0.41
USP3-220ENST00000561381 TRIM9Q9C026 710 aa12.48□□□□□ -0.41
USP3-220ENST00000561381 ZSCAN16Q9H4T2 348 aaPredicted RBP12.48□□□□□ -0.41
USP3-220ENST00000561381 FBRSL1Q9HCM7 1045 aaKnown RBP12.48□□□□□ -0.41
USP3-220ENST00000561381 TRPC7Q9HCX4 862 aa12.48□□□□□ -0.41
USP3-220ENST00000561381 ABCB6Q9NP58 842 aa12.48□□□□□ -0.41
USP3-220ENST00000561381 INTS13Q9NVM9 706 aa12.48□□□□□ -0.41
USP3-220ENST00000561381 KBTBD4Q9NVX7 518 aa12.48□□□□□ -0.41
USP3-220ENST00000561381 POLR3BQ9NW08 1133 aaPredicted RBP12.48□□□□□ -0.41
USP3-220ENST00000561381 SPTBN2O15020 2390 aa12.47□□□□□ -0.41
USP3-220ENST00000561381 ZNF233A6NK53 670 aa12.47□□□□□ -0.41
USP3-220ENST00000561381 K7ELQ4 463 aaPredicted RBP12.47□□□□□ -0.41
USP3-220ENST00000561381 SPTLC2O15270 562 aa12.47□□□□□ -0.41
USP3-220ENST00000561381 DDX6P26196 483 aaKnown RBP eCLIP12.47□□□□□ -0.41
USP3-220ENST00000561381 PCSK1P29120 753 aa12.47□□□□□ -0.41
USP3-220ENST00000561381 LHX1P48742 406 aa12.47□□□□□ -0.41
USP3-220ENST00000561381 PXNP49023 591 aaPredicted RBP12.47□□□□□ -0.41
USP3-220ENST00000561381 RPL10AP62906 217 aaKnown RBP12.47□□□□□ -0.41
USP3-220ENST00000561381 ASIC1P78348 528 aa12.47□□□□□ -0.41
USP3-220ENST00000561381 LMNB2Q03252 620 aa12.47□□□□□ -0.41
USP3-220ENST00000561381 TMEM196Q5HYL7 178 aa12.47□□□□□ -0.41
USP3-220ENST00000561381 FAM171BQ6P995 826 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms