RNA–Protein interactions for RNA: ENST00000559718.1

USP3-214, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 757 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-214ENST00000559718 LDHAP00338 332 aaKnown RBP12.5□□□□□ -0.41
USP3-214ENST00000559718 HOXD13P35453 343 aa12.5□□□□□ -0.41
USP3-214ENST00000559718 NASPP49321 788 aaPredicted RBP12.5□□□□□ -0.41
USP3-214ENST00000559718 PLCB2Q00722 1185 aa12.5□□□□□ -0.41
USP3-214ENST00000559718 CCINQ13939 588 aa12.5□□□□□ -0.41
USP3-214ENST00000559718 SOWAHAQ2M3V2 549 aa12.5□□□□□ -0.41
USP3-214ENST00000559718 ITPRIPL2Q3MIP1 535 aa12.5□□□□□ -0.41
USP3-214ENST00000559718 INTS6LQ5JSJ4 861 aaKnown RBP12.5□□□□□ -0.41
USP3-214ENST00000559718 PKN3Q6P5Z2 889 aa12.5□□□□□ -0.41
USP3-214ENST00000559718 C1orf228Q6PIY5 440 aa12.5□□□□□ -0.41
USP3-214ENST00000559718 PRR23BQ6ZRT6 265 aa12.5□□□□□ -0.41
USP3-214ENST00000559718 LRRC52Q8N7C0 313 aa12.5□□□□□ -0.41
USP3-214ENST00000559718 LINC00301Q8NCQ3 95 aa12.5□□□□□ -0.41
USP3-214ENST00000559718 OR5B17Q8NGF7 314 aa12.5□□□□□ -0.41
USP3-214ENST00000559718 CACTINQ8WUQ7 758 aaKnown RBP12.5□□□□□ -0.41
USP3-214ENST00000559718 SECISBP2LQ93073 1101 aaKnown RBP12.5□□□□□ -0.41
USP3-214ENST00000559718 CHFRQ96EP1 664 aa12.5□□□□□ -0.41
USP3-214ENST00000559718 INTS4Q96HW7 963 aaKnown RBP12.5□□□□□ -0.41
USP3-214ENST00000559718 FAM83CQ9BQN1 747 aa12.5□□□□□ -0.41
USP3-214ENST00000559718 ACBD6Q9BR61 282 aa12.5□□□□□ -0.41
USP3-214ENST00000559718 EBF3Q9H4W6 596 aa12.5□□□□□ -0.41
USP3-214ENST00000559718 THG1LQ9NWX6 298 aaKnown RBP12.5□□□□□ -0.41
USP3-214ENST00000559718 GDAP2Q9NXN4 497 aa12.5□□□□□ -0.41
USP3-214ENST00000559718 GMEB2Q9UKD1 530 aa12.5□□□□□ -0.41
USP3-214ENST00000559718 ITGA11Q9UKX5 1188 aa12.5□□□□□ -0.41
USP3-214ENST00000559718 USP18Q9UMW8 372 aa12.5□□□□□ -0.41
USP3-214ENST00000559718 MORC2Q9Y6X9 1032 aaPredicted RBP12.5□□□□□ -0.41
USP3-214ENST00000559718 OBSL1O75147 1896 aa12.5□□□□□ -0.41
USP3-214ENST00000559718 ZNF638Q14966 1978 aaKnown RBP12.5□□□□□ -0.41
USP3-214ENST00000559718 ATG2BQ96BY7 2078 aa12.5□□□□□ -0.41
USP3-214ENST00000559718 STX6O43752 255 aa12.49□□□□□ -0.41
USP3-214ENST00000559718 ATP2C2O75185 946 aa12.49□□□□□ -0.41
USP3-214ENST00000559718 TMEM191BP0C7N4 346 aa12.49□□□□□ -0.41
USP3-214ENST00000559718 CSH1P0DML2 217 aa12.49□□□□□ -0.41
USP3-214ENST00000559718 CSH2P0DML3 217 aa12.49□□□□□ -0.41
USP3-214ENST00000559718 ARSAP15289 507 aa12.49□□□□□ -0.41
USP3-214ENST00000559718 AVPR1AP37288 418 aa12.49□□□□□ -0.41
USP3-214ENST00000559718 RBP5P82980 135 aa12.49□□□□□ -0.41
USP3-214ENST00000559718 SPEM2Q0P670 501 aa12.49□□□□□ -0.41
USP3-214ENST00000559718 ALCAMQ13740 583 aa12.49□□□□□ -0.41
USP3-214ENST00000559718 STK38Q15208 465 aa12.49□□□□□ -0.41
USP3-214ENST00000559718 NFE2Q16621 373 aaPredicted RBP12.49□□□□□ -0.41
USP3-214ENST00000559718 DGKKQ5KSL6 1271 aa12.49□□□□□ -0.41
USP3-214ENST00000559718 NAIF1Q69YI7 327 aaPredicted RBP12.49□□□□□ -0.41
USP3-214ENST00000559718 CBWD2Q8IUF1 395 aa12.49□□□□□ -0.41
USP3-214ENST00000559718 CCDC65Q8IXS2 484 aa12.49□□□□□ -0.41
USP3-214ENST00000559718 ADGRF2Q8IZF7 708 aa12.49□□□□□ -0.41
USP3-214ENST00000559718 GPD1LQ8N335 351 aa12.49□□□□□ -0.41
USP3-214ENST00000559718 LEO1Q8WVC0 666 aaPredicted RBP12.49□□□□□ -0.41
USP3-214ENST00000559718 TMEM206Q9H813 350 aa12.49□□□□□ -0.41
USP3-214ENST00000559718 TDP1Q9NUW8 608 aa12.49□□□□□ -0.41
USP3-214ENST00000559718 TFIP11Q9UBB9 837 aaKnown RBP12.49□□□□□ -0.41
USP3-214ENST00000559718 RAB23Q9ULC3 237 aa12.49□□□□□ -0.41
USP3-214ENST00000559718 SDK1Q7Z5N4 2213 aa12.49□□□□□ -0.41
USP3-214ENST00000559718 GABRDO14764 452 aa12.48□□□□□ -0.41
USP3-214ENST00000559718 NOL4O94818 638 aa12.48□□□□□ -0.41
USP3-214ENST00000559718 PAPSS2O95340 614 aaPredicted RBP12.48□□□□□ -0.41
USP3-214ENST00000559718 LMO2P25791 158 aa12.48□□□□□ -0.41
USP3-214ENST00000559718 ATXN1P54253 815 aaKnown RBP12.48□□□□□ -0.41
USP3-214ENST00000559718 PSMC1P62191 440 aaKnown RBP12.48□□□□□ -0.41
USP3-214ENST00000559718 MYL7Q01449 175 aa12.48□□□□□ -0.41
USP3-214ENST00000559718 RUNX3Q13761 415 aa12.48□□□□□ -0.41
USP3-214ENST00000559718 SIM2Q14190 667 aaPredicted RBP12.48□□□□□ -0.41
USP3-214ENST00000559718 E2F4Q16254 413 aa12.48□□□□□ -0.41
USP3-214ENST00000559718 FOXD4L5Q5VV16 416 aaPredicted RBP12.48□□□□□ -0.41
USP3-214ENST00000559718 LAIR1Q6GTX8 287 aa12.48□□□□□ -0.41
USP3-214ENST00000559718 FSTL4Q6MZW2 842 aa12.48□□□□□ -0.41
USP3-214ENST00000559718 MON1AQ86VX9 555 aa12.48□□□□□ -0.41
USP3-214ENST00000559718 TMEM86AQ8N2M4 240 aa12.48□□□□□ -0.41
USP3-214ENST00000559718 TOP6BLQ8N6T0 577 aa12.48□□□□□ -0.41
USP3-214ENST00000559718 GPR161Q8N6U8 529 aaKnown RBP12.48□□□□□ -0.41
USP3-214ENST00000559718 KBTBD7Q8WVZ9 684 aa12.48□□□□□ -0.41
USP3-214ENST00000559718 FOXD4L4Q8WXT5 416 aaPredicted RBP12.48□□□□□ -0.41
USP3-214ENST00000559718 MRPS31Q92665 395 aaKnown RBP12.48□□□□□ -0.41
USP3-214ENST00000559718 DHX58Q96C10 678 aa12.48□□□□□ -0.41
USP3-214ENST00000559718 HPDLQ96IR7 371 aa12.48□□□□□ -0.41
USP3-214ENST00000559718 SLC22A12Q96S37 553 aa12.48□□□□□ -0.41
USP3-214ENST00000559718 CYP2S1Q96SQ9 504 aa12.48□□□□□ -0.41
USP3-214ENST00000559718 TRIM9Q9C026 710 aa12.48□□□□□ -0.41
USP3-214ENST00000559718 ZSCAN16Q9H4T2 348 aaPredicted RBP12.48□□□□□ -0.41
USP3-214ENST00000559718 FBRSL1Q9HCM7 1045 aaKnown RBP12.48□□□□□ -0.41
USP3-214ENST00000559718 TRPC7Q9HCX4 862 aa12.48□□□□□ -0.41
USP3-214ENST00000559718 ABCB6Q9NP58 842 aa12.48□□□□□ -0.41
USP3-214ENST00000559718 INTS13Q9NVM9 706 aa12.48□□□□□ -0.41
USP3-214ENST00000559718 KBTBD4Q9NVX7 518 aa12.48□□□□□ -0.41
USP3-214ENST00000559718 POLR3BQ9NW08 1133 aaPredicted RBP12.48□□□□□ -0.41
USP3-214ENST00000559718 SPTBN2O15020 2390 aa12.47□□□□□ -0.41
USP3-214ENST00000559718 ZNF233A6NK53 670 aa12.47□□□□□ -0.41
USP3-214ENST00000559718 K7ELQ4 463 aaPredicted RBP12.47□□□□□ -0.41
USP3-214ENST00000559718 SPTLC2O15270 562 aa12.47□□□□□ -0.41
USP3-214ENST00000559718 DDX6P26196 483 aaKnown RBP eCLIP12.47□□□□□ -0.41
USP3-214ENST00000559718 PCSK1P29120 753 aa12.47□□□□□ -0.41
USP3-214ENST00000559718 LHX1P48742 406 aa12.47□□□□□ -0.41
USP3-214ENST00000559718 PXNP49023 591 aaPredicted RBP12.47□□□□□ -0.41
USP3-214ENST00000559718 RPL10AP62906 217 aaKnown RBP12.47□□□□□ -0.41
USP3-214ENST00000559718 ASIC1P78348 528 aa12.47□□□□□ -0.41
USP3-214ENST00000559718 LMNB2Q03252 620 aa12.47□□□□□ -0.41
USP3-214ENST00000559718 TMEM196Q5HYL7 178 aa12.47□□□□□ -0.41
USP3-214ENST00000559718 FAM171BQ6P995 826 aa12.47□□□□□ -0.41
USP3-214ENST00000559718 LIMS2Q7Z4I7 341 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms