RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 SGSM1Q2NKQ1 1148 aa12.37□□□□□ -0.43
CCDC88C-208ENST00000554165 CBWD6Q4V339 395 aa12.37□□□□□ -0.43
CCDC88C-208ENST00000554165 CBWD3Q5JTY5 395 aa12.37□□□□□ -0.43
CCDC88C-208ENST00000554165 CBWD5Q5RIA9 395 aa12.37□□□□□ -0.43
CCDC88C-208ENST00000554165 SIX5Q8N196 739 aa12.37□□□□□ -0.43
CCDC88C-208ENST00000554165 ZSCAN18Q8TBC5 510 aaPredicted RBP12.37□□□□□ -0.43
CCDC88C-208ENST00000554165 SPATA18Q8TC71 538 aa12.37□□□□□ -0.43
CCDC88C-208ENST00000554165 PCED1BQ96HM7 432 aa12.37□□□□□ -0.43
CCDC88C-208ENST00000554165 DHTKD1Q96HY7 919 aaPredicted RBP12.37□□□□□ -0.43
CCDC88C-208ENST00000554165 ASB16Q96NS5 453 aa12.37□□□□□ -0.43
CCDC88C-208ENST00000554165 MED15Q96RN5 788 aa12.37□□□□□ -0.43
CCDC88C-208ENST00000554165 TSG101Q99816 390 aa12.37□□□□□ -0.43
CCDC88C-208ENST00000554165 B3GNT5Q9BYG0 378 aa12.37□□□□□ -0.43
CCDC88C-208ENST00000554165 SMG9Q9H0W8 520 aaKnown RBP12.37□□□□□ -0.43
CCDC88C-208ENST00000554165 ATXN3LQ9H3M9 355 aa12.37□□□□□ -0.43
CCDC88C-208ENST00000554165 SLITRK6Q9H5Y7 841 aa12.37□□□□□ -0.43
CCDC88C-208ENST00000554165 VRTNQ9H8Y1 702 aa12.37□□□□□ -0.43
CCDC88C-208ENST00000554165 LMBRD1Q9NUN5 540 aa12.37□□□□□ -0.43
CCDC88C-208ENST00000554165 KIAA1468Q9P260 1216 aa12.37□□□□□ -0.43
CCDC88C-208ENST00000554165 FBXL21Q9UKT6 434 aa12.37□□□□□ -0.43
CCDC88C-208ENST00000554165 CA14Q9ULX7 337 aa12.37□□□□□ -0.43
CCDC88C-208ENST00000554165 MAGED2Q9UNF1 606 aaPredicted RBP12.37□□□□□ -0.43
CCDC88C-208ENST00000554165 ASB3Q9Y575 518 aa12.37□□□□□ -0.43
CCDC88C-208ENST00000554165 ZFP37Q9Y6Q3 630 aaPredicted RBP12.37□□□□□ -0.43
CCDC88C-208ENST00000554165 SLC38A8A6NNN8 435 aa12.36□□□□□ -0.43
CCDC88C-208ENST00000554165 PSMA7O14818 248 aa12.36□□□□□ -0.43
CCDC88C-208ENST00000554165 MICAL2O94851 1124 aa12.36□□□□□ -0.43
CCDC88C-208ENST00000554165 SRFP11831 508 aa12.36□□□□□ -0.43
CCDC88C-208ENST00000554165 NPR3P17342 541 aa12.36□□□□□ -0.43
CCDC88C-208ENST00000554165 VEPH1Q14D04 833 aa12.36□□□□□ -0.43
CCDC88C-208ENST00000554165 CFAP221Q4G0U5 840 aa12.36□□□□□ -0.43
CCDC88C-208ENST00000554165 DCAF17Q5H9S7 520 aaPredicted RBP12.36□□□□□ -0.43
CCDC88C-208ENST00000554165 GPR158Q5T848 1215 aa12.36□□□□□ -0.43
CCDC88C-208ENST00000554165 TCERG1LQ5VWI1 586 aa12.36□□□□□ -0.43
CCDC88C-208ENST00000554165 CLEC17AQ6ZS10 378 aa12.36□□□□□ -0.43
CCDC88C-208ENST00000554165 BMP8AQ7Z5Y6 402 aa12.36□□□□□ -0.43
CCDC88C-208ENST00000554165 ACOT1Q86TX2 421 aa12.36□□□□□ -0.43
CCDC88C-208ENST00000554165 ITIH5Q86UX2 942 aa12.36□□□□□ -0.43
CCDC88C-208ENST00000554165 FBXL6Q8N531 539 aa12.36□□□□□ -0.43
CCDC88C-208ENST00000554165 B3GALNT2Q8NCR0 500 aa12.36□□□□□ -0.43
CCDC88C-208ENST00000554165 MYCBPAPQ8TBZ2 947 aa12.36□□□□□ -0.43
CCDC88C-208ENST00000554165 NXPE3Q969Y0 559 aa12.36□□□□□ -0.43
CCDC88C-208ENST00000554165 IPO9Q96P70 1041 aaKnown RBP12.36□□□□□ -0.43
CCDC88C-208ENST00000554165 LRRC3BQ96PB8 259 aa12.36□□□□□ -0.43
CCDC88C-208ENST00000554165 TWNKQ96RR1 684 aa12.36□□□□□ -0.43
CCDC88C-208ENST00000554165 ZNF518BQ9C0D4 1074 aa12.36□□□□□ -0.43
CCDC88C-208ENST00000554165 TMEM8AQ9HCN3 771 aa12.36□□□□□ -0.43
CCDC88C-208ENST00000554165 ABCB6Q9NP58 842 aa12.36□□□□□ -0.43
CCDC88C-208ENST00000554165 MAGEC2Q9UBF1 373 aaPredicted RBP12.36□□□□□ -0.43
CCDC88C-208ENST00000554165 SLC16A3O15427 465 aaKnown RBP12.35□□□□□ -0.43
CCDC88C-208ENST00000554165 PI15O43692 258 aa12.35□□□□□ -0.43
CCDC88C-208ENST00000554165 TADA3O75528 432 aa12.35□□□□□ -0.43
CCDC88C-208ENST00000554165 PRAMEF12O95522 483 aa12.35□□□□□ -0.43
CCDC88C-208ENST00000554165 F11P03951 625 aa12.35□□□□□ -0.43
CCDC88C-208ENST00000554165 MXI1P50539 228 aa12.35□□□□□ -0.43
CCDC88C-208ENST00000554165 NDST1P52848 882 aa12.35□□□□□ -0.43
CCDC88C-208ENST00000554165 NLRP12P59046 1061 aa12.35□□□□□ -0.43
CCDC88C-208ENST00000554165 USP46P62068 366 aa12.35□□□□□ -0.43
CCDC88C-208ENST00000554165 NOP14P78316 857 aaKnown RBP12.35□□□□□ -0.43
CCDC88C-208ENST00000554165 LRRC63Q05C16 580 aa12.35□□□□□ -0.43
CCDC88C-208ENST00000554165 STIM1Q13586 685 aa12.35□□□□□ -0.43
CCDC88C-208ENST00000554165 TAF12Q16514 161 aa12.35□□□□□ -0.43
CCDC88C-208ENST00000554165 VITQ6UXI7 678 aa12.35□□□□□ -0.43
CCDC88C-208ENST00000554165 PAQR9Q6ZVX9 377 aa12.35□□□□□ -0.43
CCDC88C-208ENST00000554165 MTSS1LQ765P7 747 aa12.35□□□□□ -0.43
CCDC88C-208ENST00000554165 ARID3BQ8IVW6 561 aaPredicted RBP12.35□□□□□ -0.43
CCDC88C-208ENST00000554165 LEMD2Q8NC56 503 aa12.35□□□□□ -0.43
CCDC88C-208ENST00000554165 FLCNQ8NFG4 579 aa12.35□□□□□ -0.43
CCDC88C-208ENST00000554165 WHAMMQ8TF30 809 aa12.35□□□□□ -0.43
CCDC88C-208ENST00000554165 SMARCD2Q92925 531 aa12.35□□□□□ -0.43
CCDC88C-208ENST00000554165 TATDN2Q93075 761 aa12.35□□□□□ -0.43
CCDC88C-208ENST00000554165 SLC35C1Q96A29 364 aa12.35□□□□□ -0.43
CCDC88C-208ENST00000554165 ARID3AQ99856 593 aa12.35□□□□□ -0.43
CCDC88C-208ENST00000554165 SLC46A2Q9BY10 475 aa12.35□□□□□ -0.43
CCDC88C-208ENST00000554165 CLSTN2Q9H4D0 955 aa12.35□□□□□ -0.43
CCDC88C-208ENST00000554165 ZFP14Q9HCL3 533 aa12.35□□□□□ -0.43
CCDC88C-208ENST00000554165 F5P12259 2224 aa12.35□□□□□ -0.43
CCDC88C-208ENST00000554165 CACNA1HO95180 2353 aa12.35□□□□□ -0.43
CCDC88C-208ENST00000554165 F8VP50 259 aa12.34□□□□□ -0.43
CCDC88C-208ENST00000554165 ECI2O75521 394 aa12.34□□□□□ -0.43
CCDC88C-208ENST00000554165 NOL4O94818 638 aa12.34□□□□□ -0.43
CCDC88C-208ENST00000554165 FAM163BP0C2L3 166 aa12.34□□□□□ -0.43
CCDC88C-208ENST00000554165 CCDC130P13994 396 aa12.34□□□□□ -0.43
CCDC88C-208ENST00000554165 CD58P19256 250 aa12.34□□□□□ -0.43
CCDC88C-208ENST00000554165 GTF2H1P32780 548 aa12.34□□□□□ -0.43
CCDC88C-208ENST00000554165 GRIK1P39086 918 aa12.34□□□□□ -0.43
CCDC88C-208ENST00000554165 MAGEA11P43364 429 aa12.34□□□□□ -0.43
CCDC88C-208ENST00000554165 RPL10AP62906 217 aaKnown RBP12.34□□□□□ -0.43
CCDC88C-208ENST00000554165 CWF19L1Q69YN2 538 aaKnown RBP12.34□□□□□ -0.43
CCDC88C-208ENST00000554165 KRT39Q6A163 491 aa12.34□□□□□ -0.43
CCDC88C-208ENST00000554165 TXNDC8Q6A555 127 aa12.34□□□□□ -0.43
CCDC88C-208ENST00000554165 C4orf50Q6ZRC1 276 aa12.34□□□□□ -0.43
CCDC88C-208ENST00000554165 TMEM105Q8N8V8 129 aa12.34□□□□□ -0.43
CCDC88C-208ENST00000554165 C12orf29Q8N999 325 aa12.34□□□□□ -0.43
CCDC88C-208ENST00000554165 TAF4BQ92750 862 aa12.34□□□□□ -0.43
CCDC88C-208ENST00000554165 ELSPBP1Q96BH3 223 aa12.34□□□□□ -0.43
CCDC88C-208ENST00000554165 FUBP3Q96I24 572 aaKnown RBP eCLIP12.34□□□□□ -0.43
CCDC88C-208ENST00000554165 KCNK16Q96T55 309 aa12.34□□□□□ -0.43
CCDC88C-208ENST00000554165 BCO2Q9BYV7 579 aa12.34□□□□□ -0.43
CCDC88C-208ENST00000554165 GTPBP4Q9BZE4 634 aaKnown RBP12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms