RNA–Protein interactions for RNA: ENST00000553256.5

PTCH1-227, Transcript of patched 1, humanhuman

TSL 4

Gene PTCH1, Length 537 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-227ENST00000553256 STKLD1Q8NE28 680 aa20.6■□□□□ 0.89
PTCH1-227ENST00000553256 TRMT2BQ96GJ1 504 aaKnown RBP20.6■□□□□ 0.89
PTCH1-227ENST00000553256 BCO2Q9BYV7 579 aa20.6■□□□□ 0.89
PTCH1-227ENST00000553256 GPR88Q9GZN0 384 aa20.6■□□□□ 0.89
PTCH1-227ENST00000553256 NXF1Q9UBU9 619 aaKnown RBP20.6■□□□□ 0.89
PTCH1-227ENST00000553256 HOOK1Q9UJC3 728 aaKnown RBP20.6■□□□□ 0.89
PTCH1-227ENST00000553256 R3HCC1Q9Y3T6 440 aaKnown RBP20.6■□□□□ 0.89
PTCH1-227ENST00000553256 COL4A2P08572 1712 aa20.6■□□□□ 0.89
PTCH1-227ENST00000553256 COL4A3Q01955 1670 aa20.6■□□□□ 0.89
PTCH1-227ENST00000553256 DMDP11532 3685 aa20.6■□□□□ 0.89
PTCH1-227ENST00000553256 ARNTLO00327 626 aa20.59■□□□□ 0.89
PTCH1-227ENST00000553256 SLC16A3O15427 465 aaKnown RBP20.59■□□□□ 0.89
PTCH1-227ENST00000553256 PHACTR2O75167 634 aa20.59■□□□□ 0.89
PTCH1-227ENST00000553256 GABRR2P28476 465 aa20.59■□□□□ 0.89
PTCH1-227ENST00000553256 VIPR2P41587 438 aa20.59■□□□□ 0.89
PTCH1-227ENST00000553256 RAP1GAPP47736 663 aa20.59■□□□□ 0.89
PTCH1-227ENST00000553256 CACNA2D1P54289 1103 aa20.59■□□□□ 0.89
PTCH1-227ENST00000553256 TNNC1P63316 161 aa20.59■□□□□ 0.89
PTCH1-227ENST00000553256 FKBP3Q00688 224 aaKnown RBP20.59■□□□□ 0.89
PTCH1-227ENST00000553256 ZNF667Q5HYK9 610 aa20.59■□□□□ 0.89
PTCH1-227ENST00000553256 VITQ6UXI7 678 aa20.59■□□□□ 0.89
PTCH1-227ENST00000553256 ZSCAN18Q8TBC5 510 aaPredicted RBP20.59■□□□□ 0.89
PTCH1-227ENST00000553256 SEMA4DQ92854 862 aa20.59■□□□□ 0.89
PTCH1-227ENST00000553256 DHTKD1Q96HY7 919 aaPredicted RBP20.59■□□□□ 0.89
PTCH1-227ENST00000553256 DDX23Q9BUQ8 820 aaKnown RBP20.59■□□□□ 0.89
PTCH1-227ENST00000553256 KCNH6Q9H252 994 aa20.59■□□□□ 0.89
PTCH1-227ENST00000553256 TMEM8AQ9HCN3 771 aa20.59■□□□□ 0.89
PTCH1-227ENST00000553256 CETN3O15182 167 aa20.58■□□□□ 0.89
PTCH1-227ENST00000553256 FGF19O95750 216 aa20.58■□□□□ 0.89
PTCH1-227ENST00000553256 PTPN1P18031 435 aaKnown RBP20.58■□□□□ 0.89
PTCH1-227ENST00000553256 ANP32AP39687 249 aaKnown RBP20.58■□□□□ 0.89
PTCH1-227ENST00000553256 CLCN5P51795 746 aa20.58■□□□□ 0.89
PTCH1-227ENST00000553256 NLRP12P59046 1061 aa20.58■□□□□ 0.89
PTCH1-227ENST00000553256 ISM2Q6H9L7 571 aa20.58■□□□□ 0.89
PTCH1-227ENST00000553256 VSTM1Q6UX27 236 aa20.58■□□□□ 0.89
PTCH1-227ENST00000553256 SIX5Q8N196 739 aa20.58■□□□□ 0.89
PTCH1-227ENST00000553256 SPATA17Q96L03 361 aa20.58■□□□□ 0.89
PTCH1-227ENST00000553256 CEP295NLQ96MC4 621 aa20.58■□□□□ 0.89
PTCH1-227ENST00000553256 MED15Q96RN5 788 aa20.58■□□□□ 0.89
PTCH1-227ENST00000553256 SLC46A2Q9BY10 475 aa20.58■□□□□ 0.89
PTCH1-227ENST00000553256 HMGXB4Q9UGU5 601 aa20.58■□□□□ 0.89
PTCH1-227ENST00000553256 COQ4Q9Y3A0 265 aa20.58■□□□□ 0.89
PTCH1-227ENST00000553256 SLC38A8A6NNN8 435 aa20.57■□□□□ 0.88
PTCH1-227ENST00000553256 PI15O43692 258 aa20.57■□□□□ 0.88
PTCH1-227ENST00000553256 STARD6P59095 220 aa20.57■□□□□ 0.88
PTCH1-227ENST00000553256 RPL10AP62906 217 aaKnown RBP20.57■□□□□ 0.88
PTCH1-227ENST00000553256 INCA1Q0VD86 236 aa20.57■□□□□ 0.88
PTCH1-227ENST00000553256 VEPH1Q14D04 833 aa20.57■□□□□ 0.88
PTCH1-227ENST00000553256 MAPRE1Q15691 268 aaKnown RBP20.57■□□□□ 0.88
PTCH1-227ENST00000553256 MDH1BQ5I0G3 518 aa20.57■□□□□ 0.88
PTCH1-227ENST00000553256 C4orf50Q6ZRC1 276 aa20.57■□□□□ 0.88
PTCH1-227ENST00000553256 SPATA2LQ8IUW3 424 aaPredicted RBP20.57■□□□□ 0.88
PTCH1-227ENST00000553256 CRYBG2Q8N1P7 616 aa20.57■□□□□ 0.88
PTCH1-227ENST00000553256 B3GALNT2Q8NCR0 500 aa20.57■□□□□ 0.88
PTCH1-227ENST00000553256 PRSS33Q8NF86 280 aa20.57■□□□□ 0.88
PTCH1-227ENST00000553256 OR6B3Q8NGW1 331 aa20.57■□□□□ 0.88
PTCH1-227ENST00000553256 WHAMMQ8TF30 809 aa20.57■□□□□ 0.88
PTCH1-227ENST00000553256 SLC35C1Q96A29 364 aa20.57■□□□□ 0.88
PTCH1-227ENST00000553256 B3GNT5Q9BYG0 378 aa20.57■□□□□ 0.88
PTCH1-227ENST00000553256 SNX25Q9H3E2 840 aa20.57■□□□□ 0.88
PTCH1-227ENST00000553256 ATXN3LQ9H3M9 355 aa20.57■□□□□ 0.88
PTCH1-227ENST00000553256 TASP1Q9H6P5 420 aa20.57■□□□□ 0.88
PTCH1-227ENST00000553256 ZFP14Q9HCL3 533 aa20.57■□□□□ 0.88
PTCH1-227ENST00000553256 MAGEC2Q9UBF1 373 aaPredicted RBP20.57■□□□□ 0.88
PTCH1-227ENST00000553256 MYO15AQ9UKN7 3530 aa20.57■□□□□ 0.88
PTCH1-227ENST00000553256 GREB1Q4ZG55 1949 aa20.57■□□□□ 0.88
PTCH1-227ENST00000553256 DENND4CQ5VZ89 1909 aa20.57■□□□□ 0.88
PTCH1-227ENST00000553256 PRAMEF12O95522 483 aa20.56■□□□□ 0.88
PTCH1-227ENST00000553256 CSH1P0DML2 217 aa20.56■□□□□ 0.88
PTCH1-227ENST00000553256 CSH2P0DML3 217 aa20.56■□□□□ 0.88
PTCH1-227ENST00000553256 KRT13P13646 458 aa20.56■□□□□ 0.88
PTCH1-227ENST00000553256 AOC1P19801 751 aa20.56■□□□□ 0.88
PTCH1-227ENST00000553256 BDNFP23560 247 aa20.56■□□□□ 0.88
PTCH1-227ENST00000553256 CDC25CP30307 473 aa20.56■□□□□ 0.88
PTCH1-227ENST00000553256 CYP4F8P98187 520 aa20.56■□□□□ 0.88
PTCH1-227ENST00000553256 FCHO2Q0JRZ9 810 aa20.56■□□□□ 0.88
PTCH1-227ENST00000553256 CBWD6Q4V339 395 aa20.56■□□□□ 0.88
PTCH1-227ENST00000553256 CBWD3Q5JTY5 395 aa20.56■□□□□ 0.88
PTCH1-227ENST00000553256 CBWD5Q5RIA9 395 aa20.56■□□□□ 0.88
PTCH1-227ENST00000553256 KRT39Q6A163 491 aa20.56■□□□□ 0.88
PTCH1-227ENST00000553256 ASTLQ6HA08 431 aaPredicted RBP20.56■□□□□ 0.88
PTCH1-227ENST00000553256 PHLDB3Q6NSJ2 640 aa20.56■□□□□ 0.88
PTCH1-227ENST00000553256 ARID3BQ8IVW6 561 aaPredicted RBP20.56■□□□□ 0.88
PTCH1-227ENST00000553256 ZNF687Q8N1G0 1237 aa20.56■□□□□ 0.88
PTCH1-227ENST00000553256 C8orf48Q96LL4 319 aa20.56■□□□□ 0.88
PTCH1-227ENST00000553256 TWNKQ96RR1 684 aa20.56■□□□□ 0.88
PTCH1-227ENST00000553256 TTLL2Q9BWV7 592 aa20.56■□□□□ 0.88
PTCH1-227ENST00000553256 ZNF518BQ9C0D4 1074 aa20.56■□□□□ 0.88
PTCH1-227ENST00000553256 TRPV5Q9NQA5 729 aa20.56■□□□□ 0.88
PTCH1-227ENST00000553256 ARHGEF3Q9NR81 526 aa20.56■□□□□ 0.88
PTCH1-227ENST00000553256 DLGAP2Q9P1A6 1054 aa20.56■□□□□ 0.88
PTCH1-227ENST00000553256 KIAA1468Q9P260 1216 aa20.56■□□□□ 0.88
PTCH1-227ENST00000553256 HCN4Q9Y3Q4 1203 aa20.56■□□□□ 0.88
PTCH1-227ENST00000553256 OBSL1O75147 1896 aa20.56■□□□□ 0.88
PTCH1-227ENST00000553256 SOBPA7XYQ1 873 aa20.55■□□□□ 0.88
PTCH1-227ENST00000553256 A8MXQ7 604 aa20.55■□□□□ 0.88
PTCH1-227ENST00000553256 USP46P62068 366 aa20.55■□□□□ 0.88
PTCH1-227ENST00000553256 NOP14P78316 857 aaKnown RBP20.55■□□□□ 0.88
PTCH1-227ENST00000553256 TCF15Q12870 199 aa20.55■□□□□ 0.88
PTCH1-227ENST00000553256 SCARA5Q6ZMJ2 495 aa20.55■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms