RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 PRG3Q9Y2Y8 225 aaPredicted RBP18.76■□□□□ 0.59
CLIP1-215ENST00000541108 FAM170AA1A519 330 aa18.75■□□□□ 0.59
CLIP1-215ENST00000541108 F8W810 466 aa18.75■□□□□ 0.59
CLIP1-215ENST00000541108 ENC1O14682 589 aa18.75■□□□□ 0.59
CLIP1-215ENST00000541108 ATMINO43313 823 aaPredicted RBP18.75■□□□□ 0.59
CLIP1-215ENST00000541108 BUB1BO60566 1050 aaPredicted RBP18.75■□□□□ 0.59
CLIP1-215ENST00000541108 OAZ2O95190 189 aa18.75■□□□□ 0.59
CLIP1-215ENST00000541108 ATP1A1P05023 1023 aaKnown RBP18.75■□□□□ 0.59
CLIP1-215ENST00000541108 ACAT1P24752 427 aaKnown RBP18.75■□□□□ 0.59
CLIP1-215ENST00000541108 SLC11A1P49279 550 aa18.75■□□□□ 0.59
CLIP1-215ENST00000541108 TAP1Q03518 808 aa18.75■□□□□ 0.59
CLIP1-215ENST00000541108 BST2Q10589 180 aaKnown RBP18.75■□□□□ 0.59
CLIP1-215ENST00000541108 MAMLD1Q13495 774 aa18.75■□□□□ 0.59
CLIP1-215ENST00000541108 ZNF268Q14587 947 aaPredicted RBP18.75■□□□□ 0.59
CLIP1-215ENST00000541108 MEI1Q5TIA1 1274 aa18.75■□□□□ 0.59
CLIP1-215ENST00000541108 KIAA0319Q5VV43 1072 aa18.75■□□□□ 0.59
CLIP1-215ENST00000541108 C3orf20Q8ND61 904 aa18.75■□□□□ 0.59
CLIP1-215ENST00000541108 MYCBPAPQ8TBZ2 947 aa18.75■□□□□ 0.59
CLIP1-215ENST00000541108 SLC2A14Q8TDB8 520 aa18.75■□□□□ 0.59
CLIP1-215ENST00000541108 CPXM1Q96SM3 734 aa18.75■□□□□ 0.59
CLIP1-215ENST00000541108 CRTAC1Q9NQ79 661 aa18.75■□□□□ 0.59
CLIP1-215ENST00000541108 CYLDQ9NQC7 956 aa18.75■□□□□ 0.59
CLIP1-215ENST00000541108 LCMT1Q9UIC8 334 aa18.75■□□□□ 0.59
CLIP1-215ENST00000541108 TCRBV5S1A1TA0A578 114 aa18.74■□□□□ 0.59
CLIP1-215ENST00000541108 ATP2C2O75185 946 aa18.74■□□□□ 0.59
CLIP1-215ENST00000541108 ACRP10323 421 aa18.74■□□□□ 0.59
CLIP1-215ENST00000541108 CCDC130P13994 396 aa18.74■□□□□ 0.59
CLIP1-215ENST00000541108 RPL34P49207 117 aaKnown RBP18.74■□□□□ 0.59
CLIP1-215ENST00000541108 ALDH7A1P49419 539 aaKnown RBP18.74■□□□□ 0.59
CLIP1-215ENST00000541108 SLC8A3P57103 927 aa18.74■□□□□ 0.59
CLIP1-215ENST00000541108 PSMC1P62191 440 aaKnown RBP18.74■□□□□ 0.59
CLIP1-215ENST00000541108 AMPD2Q01433 879 aa18.74■□□□□ 0.59
CLIP1-215ENST00000541108 FPGSQ05932 587 aa18.74■□□□□ 0.59
CLIP1-215ENST00000541108 MAPRE1Q15691 268 aaKnown RBP18.74■□□□□ 0.59
CLIP1-215ENST00000541108 C2CD6Q53TS8 623 aa18.74■□□□□ 0.59
CLIP1-215ENST00000541108 FAM171BQ6P995 826 aa18.74■□□□□ 0.59
CLIP1-215ENST00000541108 TMEM110Q86TL2 294 aa18.74■□□□□ 0.59
CLIP1-215ENST00000541108 FUKQ8N0W3 1084 aa18.74■□□□□ 0.59
CLIP1-215ENST00000541108 IPO4Q8TEX9 1081 aaKnown RBP18.74■□□□□ 0.59
CLIP1-215ENST00000541108 RTP3Q9BQQ7 232 aa18.74■□□□□ 0.59
CLIP1-215ENST00000541108 SLC4A5Q9BY07 1137 aa18.74■□□□□ 0.59
CLIP1-215ENST00000541108 DUSP16Q9BY84 665 aa18.74■□□□□ 0.59
CLIP1-215ENST00000541108 SYNCQ9H7C4 482 aa18.74■□□□□ 0.59
CLIP1-215ENST00000541108 RC3H2Q9HBD1 1191 aaKnown RBP18.74■□□□□ 0.59
CLIP1-215ENST00000541108 SAR1BQ9Y6B6 198 aa18.74■□□□□ 0.59
CLIP1-215ENST00000541108 TSC2P49815 1807 aa18.74■□□□□ 0.59
CLIP1-215ENST00000541108 SF3B1O75533 1304 aaKnown RBP eCLIP18.74■□□□□ 0.59
CLIP1-215ENST00000541108 ALPK3Q96L96 1907 aa18.73■□□□□ 0.59
CLIP1-215ENST00000541108 FGBP02675 491 aa18.73■□□□□ 0.59
CLIP1-215ENST00000541108 PDE4CQ08493 712 aa18.73■□□□□ 0.59
CLIP1-215ENST00000541108 INTS6LQ5JSJ4 861 aaKnown RBP18.73■□□□□ 0.59
CLIP1-215ENST00000541108 C16orf59Q7L2K0 433 aa18.73■□□□□ 0.59
CLIP1-215ENST00000541108 PEX26Q7Z412 305 aa18.73■□□□□ 0.59
CLIP1-215ENST00000541108 FEZF2Q8TBJ5 459 aa18.73■□□□□ 0.59
CLIP1-215ENST00000541108 HSFY1Q96LI6 401 aa18.73■□□□□ 0.59
CLIP1-215ENST00000541108 TLR10Q9BXR5 811 aa18.73■□□□□ 0.59
CLIP1-215ENST00000541108 MARCH5Q9NX47 278 aa18.73■□□□□ 0.59
CLIP1-215ENST00000541108 CHORDC1Q9UHD1 332 aaPredicted RBP18.73■□□□□ 0.59
CLIP1-215ENST00000541108 MYO1FO00160 1098 aa18.73■□□□□ 0.59
CLIP1-215ENST00000541108 TCP1P17987 556 aaKnown RBP18.73■□□□□ 0.59
CLIP1-215ENST00000541108 ADORA2BP29275 332 aa18.73■□□□□ 0.59
CLIP1-215ENST00000541108 BCAR1P56945 870 aa18.73■□□□□ 0.59
CLIP1-215ENST00000541108 DEFB103AP81534 67 aa18.73■□□□□ 0.59
CLIP1-215ENST00000541108 MDH1BQ5I0G3 518 aa18.73■□□□□ 0.59
CLIP1-215ENST00000541108 PMF1Q6P1K2 205 aa18.73■□□□□ 0.59
CLIP1-215ENST00000541108 PAQR9Q6ZVX9 377 aa18.73■□□□□ 0.59
CLIP1-215ENST00000541108 NT5DC3Q86UY8 548 aa18.73■□□□□ 0.59
CLIP1-215ENST00000541108 ZDHHC17Q8IUH5 632 aa18.73■□□□□ 0.59
CLIP1-215ENST00000541108 CMTR2Q8IYT2 770 aaKnown RBP18.73■□□□□ 0.59
CLIP1-215ENST00000541108 BADQ92934 168 aa18.73■□□□□ 0.59
CLIP1-215ENST00000541108 PCED1BQ96HM7 432 aa18.73■□□□□ 0.59
CLIP1-215ENST00000541108 LPIN3Q9BQK8 851 aa18.73■□□□□ 0.59
CLIP1-215ENST00000541108 HTATIP2Q9BUP3 242 aa18.73■□□□□ 0.59
CLIP1-215ENST00000541108 CWH43Q9H720 699 aa18.73■□□□□ 0.59
CLIP1-215ENST00000541108 ST7Q9NRC1 585 aa18.73■□□□□ 0.59
CLIP1-215ENST00000541108 CDC23Q9UJX2 597 aa18.73■□□□□ 0.59
CLIP1-215ENST00000541108 ANAPC7Q9UJX3 599 aa18.73■□□□□ 0.59
CLIP1-215ENST00000541108 AMFRQ9UKV5 643 aa18.73■□□□□ 0.59
CLIP1-215ENST00000541108 SNX12Q9UMY4 172 aa18.73■□□□□ 0.59
CLIP1-215ENST00000541108 MRFAP1Q9Y605 127 aa18.73■□□□□ 0.59
CLIP1-215ENST00000541108 ALG6Q9Y672 507 aa18.73■□□□□ 0.59
CLIP1-215ENST00000541108 MYBPHLA2RUH7 354 aa18.72■□□□□ 0.59
CLIP1-215ENST00000541108 SIGLEC16A6NMB1 481 aa18.72■□□□□ 0.59
CLIP1-215ENST00000541108 FTCDO95954 541 aa18.72■□□□□ 0.59
CLIP1-215ENST00000541108 FGFR3P22607 806 aa18.72■□□□□ 0.59
CLIP1-215ENST00000541108 ACADSBP45954 432 aa18.72■□□□□ 0.59
CLIP1-215ENST00000541108 PLA2G4AP47712 749 aa18.72■□□□□ 0.59
CLIP1-215ENST00000541108 TSPY1Q01534 308 aa18.72■□□□□ 0.59
CLIP1-215ENST00000541108 PPP1R15BQ5SWA1 713 aa18.72■□□□□ 0.59
CLIP1-215ENST00000541108 DNAJC24Q6P3W2 148 aa18.72■□□□□ 0.59
CLIP1-215ENST00000541108 OTOP2Q7RTS6 562 aa18.72■□□□□ 0.59
CLIP1-215ENST00000541108 XYLT1Q86Y38 959 aa18.72■□□□□ 0.59
CLIP1-215ENST00000541108 MCRS1Q96EZ8 462 aa18.72■□□□□ 0.59
CLIP1-215ENST00000541108 PKMYT1Q99640 499 aa18.72■□□□□ 0.59
CLIP1-215ENST00000541108 TMEM191CA6NGB0 347 aa18.71■□□□□ 0.59
CLIP1-215ENST00000541108 XPO1O14980 1071 aaKnown RBP18.71■□□□□ 0.59
CLIP1-215ENST00000541108 ERBB2P04626 1255 aa18.71■□□□□ 0.59
CLIP1-215ENST00000541108 NPR3P17342 541 aa18.71■□□□□ 0.59
CLIP1-215ENST00000541108 TKTP29401 623 aaKnown RBP18.71■□□□□ 0.59
CLIP1-215ENST00000541108 SLC1A1P43005 524 aa18.71■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms