RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 KLF1Q13351 362 aaPredicted RBP4.41□□□□□ -1.7
SMC4-220ENST00000488017 IL10RAQ13651 578 aa4.41□□□□□ -1.7
SMC4-220ENST00000488017 KRT81Q14533 505 aa4.41□□□□□ -1.7
SMC4-220ENST00000488017 SEMA3AQ14563 771 aa4.41□□□□□ -1.7
SMC4-220ENST00000488017 TBC1D25Q3MII6 688 aa4.41□□□□□ -1.7
SMC4-220ENST00000488017 C10orf25Q5T742 122 aa4.41□□□□□ -1.7
SMC4-220ENST00000488017 FCRL6Q6DN72 434 aa4.41□□□□□ -1.7
SMC4-220ENST00000488017 SLC4A10Q6U841 1118 aa4.41□□□□□ -1.7
SMC4-220ENST00000488017 MTHFD1LQ6UB35 978 aa4.41□□□□□ -1.7
SMC4-220ENST00000488017 LRRC71Q8N4P6 559 aa4.41□□□□□ -1.7
SMC4-220ENST00000488017 ZBTB8BQ8NAP8 495 aaPredicted RBP4.41□□□□□ -1.7
SMC4-220ENST00000488017 NSUN6Q8TEA1 469 aaKnown RBP4.41□□□□□ -1.7
SMC4-220ENST00000488017 CHAC2Q8WUX2 184 aa4.41□□□□□ -1.7
SMC4-220ENST00000488017 DDX17Q92841 729 aaKnown RBP4.41□□□□□ -1.7
SMC4-220ENST00000488017 PUS7Q96PZ0 661 aaKnown RBP4.41□□□□□ -1.7
SMC4-220ENST00000488017 PRSS29PA6NIE9 313 aa4.4□□□□□ -1.71
SMC4-220ENST00000488017 NT5C1B-RDH14C9J2C7 533 aa4.4□□□□□ -1.71
SMC4-220ENST00000488017 VPS4BO75351 444 aa4.4□□□□□ -1.71
SMC4-220ENST00000488017 ABLIM3O94929 683 aa4.4□□□□□ -1.71
SMC4-220ENST00000488017 KIF20AO95235 890 aa4.4□□□□□ -1.71
SMC4-220ENST00000488017 MT3P25713 68 aa4.4□□□□□ -1.71
SMC4-220ENST00000488017 PDE1AP54750 535 aa4.4□□□□□ -1.71
SMC4-220ENST00000488017 SNAPC2Q13487 334 aa4.4□□□□□ -1.71
SMC4-220ENST00000488017 TRIM71Q2Q1W2 868 aaKnown RBP4.4□□□□□ -1.71
SMC4-220ENST00000488017 C3orf36Q3SXR2 165 aa4.4□□□□□ -1.71
SMC4-220ENST00000488017 LEXMQ3ZCV2 418 aa4.4□□□□□ -1.71
SMC4-220ENST00000488017 ATG9BQ674R7 924 aa4.4□□□□□ -1.71
SMC4-220ENST00000488017 KIRREL2Q6UWL6 708 aa4.4□□□□□ -1.71
SMC4-220ENST00000488017 TMEM108Q6UXF1 575 aa4.4□□□□□ -1.71
SMC4-220ENST00000488017 LIMCH1Q9UPQ0 1083 aa4.4□□□□□ -1.71
SMC4-220ENST00000488017 AGAP1Q9UPQ3 857 aa4.4□□□□□ -1.71
SMC4-220ENST00000488017 CFAP20Q9Y6A4 193 aaKnown RBP4.4□□□□□ -1.71
SMC4-220ENST00000488017 FTH1P19P0C7X4 201 aa4.39□□□□□ -1.71
SMC4-220ENST00000488017 EDNRBP24530 442 aa4.39□□□□□ -1.71
SMC4-220ENST00000488017 KCNJ5P48544 419 aa4.39□□□□□ -1.71
SMC4-220ENST00000488017 SRSF1Q07955 248 aaKnown RBP eCLIP4.39□□□□□ -1.71
SMC4-220ENST00000488017 ZNF268Q14587 947 aaPredicted RBP4.39□□□□□ -1.71
SMC4-220ENST00000488017 KIF22Q14807 665 aa4.39□□□□□ -1.71
SMC4-220ENST00000488017 CLUL1Q15846 466 aa4.39□□□□□ -1.71
SMC4-220ENST00000488017 KHDC1Q4VXA5 237 aaKnown RBP4.39□□□□□ -1.71
SMC4-220ENST00000488017 CT47A1Q5JQC4 288 aaPredicted RBP4.39□□□□□ -1.71
SMC4-220ENST00000488017 LHFPL2Q6ZUX7 228 aa4.39□□□□□ -1.71
SMC4-220ENST00000488017 TTC7BQ86TV6 843 aa4.39□□□□□ -1.71
SMC4-220ENST00000488017 ABHD11Q8NFV4 315 aa4.39□□□□□ -1.71
SMC4-220ENST00000488017 WDR66Q8TBY9 1149 aa4.39□□□□□ -1.71
SMC4-220ENST00000488017 SNX18Q96RF0 628 aa4.39□□□□□ -1.71
SMC4-220ENST00000488017 THAP7Q9BT49 309 aaPredicted RBP4.39□□□□□ -1.71
SMC4-220ENST00000488017 CCDC154A6NI56 674 aa4.38□□□□□ -1.71
SMC4-220ENST00000488017 PRSS44E7EML9 344 aa4.38□□□□□ -1.71
SMC4-220ENST00000488017 FESP07332 822 aa4.38□□□□□ -1.71
SMC4-220ENST00000488017 SMARCA1P28370 1054 aa4.38□□□□□ -1.71
SMC4-220ENST00000488017 PPIFP30405 207 aaKnown RBP4.38□□□□□ -1.71
SMC4-220ENST00000488017 PIK3CGP48736 1102 aa4.38□□□□□ -1.71
SMC4-220ENST00000488017 HTR6P50406 440 aa4.38□□□□□ -1.71
SMC4-220ENST00000488017 FXR1P51114 621 aaKnown RBP eCLIP4.38□□□□□ -1.71
SMC4-220ENST00000488017 GPSM2P81274 684 aa4.38□□□□□ -1.71
SMC4-220ENST00000488017 GHRHRQ02643 423 aa4.38□□□□□ -1.71
SMC4-220ENST00000488017 HYAL1Q12794 435 aa4.38□□□□□ -1.71
SMC4-220ENST00000488017 RNF219Q5W0B1 726 aaPredicted RBP4.38□□□□□ -1.71
SMC4-220ENST00000488017 Q6ZWC4 215 aa4.38□□□□□ -1.71
SMC4-220ENST00000488017 USP37Q86T82 979 aa4.38□□□□□ -1.71
SMC4-220ENST00000488017 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP4.38□□□□□ -1.71
SMC4-220ENST00000488017 RBMXL3Q8N7X1 1067 aaKnown RBP4.38□□□□□ -1.71
SMC4-220ENST00000488017 TERB1Q8NA31 727 aa4.38□□□□□ -1.71
SMC4-220ENST00000488017 JADE3Q92613 823 aa4.38□□□□□ -1.71
SMC4-220ENST00000488017 KAT5Q92993 513 aa4.38□□□□□ -1.71
SMC4-220ENST00000488017 VRK1Q99986 396 aaPredicted RBP4.38□□□□□ -1.71
SMC4-220ENST00000488017 FOXP1Q9H334 677 aaPredicted RBP4.38□□□□□ -1.71
SMC4-220ENST00000488017 GLOD4Q9HC38 313 aa4.38□□□□□ -1.71
SMC4-220ENST00000488017 CACNA1IQ9P0X4 2223 aa4.37□□□□□ -1.71
SMC4-220ENST00000488017 EME2A4GXA9 379 aaPredicted RBP4.37□□□□□ -1.71
SMC4-220ENST00000488017 SERINC4A6NH21 518 aa4.37□□□□□ -1.71
SMC4-220ENST00000488017 SMAD6O43541 496 aaKnown RBP4.37□□□□□ -1.71
SMC4-220ENST00000488017 A1BGP04217 495 aa4.37□□□□□ -1.71
SMC4-220ENST00000488017 DLDP09622 509 aaKnown RBP4.37□□□□□ -1.71
SMC4-220ENST00000488017 C5AR1P21730 350 aa4.37□□□□□ -1.71
SMC4-220ENST00000488017 TPTEP56180 551 aa4.37□□□□□ -1.71
SMC4-220ENST00000488017 KRTAP10-5P60370 271 aa4.37□□□□□ -1.71
SMC4-220ENST00000488017 NPY5RQ15761 445 aa4.37□□□□□ -1.71
SMC4-220ENST00000488017 Q6ZTC4 211 aa4.37□□□□□ -1.71
SMC4-220ENST00000488017 HIPK2Q9H2X6 1198 aa4.37□□□□□ -1.71
SMC4-220ENST00000488017 POT1Q9NUX5 634 aa4.37□□□□□ -1.71
SMC4-220ENST00000488017 ZDHHC8Q9ULC8 765 aa4.37□□□□□ -1.71
SMC4-220ENST00000488017 A1L4Q6 167 aa4.36□□□□□ -1.71
SMC4-220ENST00000488017 EXOC3O60645 756 aa4.36□□□□□ -1.71
SMC4-220ENST00000488017 ARIH2O95376 493 aa4.36□□□□□ -1.71
SMC4-220ENST00000488017 GNAI2P04899 355 aa4.36□□□□□ -1.71
SMC4-220ENST00000488017 PRDX5P30044 214 aa4.36□□□□□ -1.71
SMC4-220ENST00000488017 BOP1Q14137 746 aaKnown RBP4.36□□□□□ -1.71
SMC4-220ENST00000488017 FAM160B1Q5W0V3 765 aa4.36□□□□□ -1.71
SMC4-220ENST00000488017 SERPINA13PQ6UXR4 307 aa4.36□□□□□ -1.71
SMC4-220ENST00000488017 PIP4P1Q86T03 277 aa4.36□□□□□ -1.71
SMC4-220ENST00000488017 FAM90A1Q86YD7 464 aa4.36□□□□□ -1.71
SMC4-220ENST00000488017 COG1Q8WTW3 980 aa4.36□□□□□ -1.71
SMC4-220ENST00000488017 ATG4AQ8WYN0 398 aa4.36□□□□□ -1.71
SMC4-220ENST00000488017 GLG1Q92896 1179 aa4.36□□□□□ -1.71
SMC4-220ENST00000488017 CTAGE1Q96RT6 745 aa4.36□□□□□ -1.71
SMC4-220ENST00000488017 PTDSS2Q9BVG9 487 aa4.36□□□□□ -1.71
SMC4-220ENST00000488017 PI4KBQ9UBF8 816 aa4.36□□□□□ -1.71
SMC4-220ENST00000488017 SERTAD3Q9UJW9 196 aa4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms