RNA–Protein interactions for RNA: ENST00000486023.1

COL6A1-204, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 2

Gene COL6A1, Length 968 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-204ENST00000486023 DPEP3Q9H4B8 488 aa18.87■□□□□ 0.61
COL6A1-204ENST00000486023 TASP1Q9H6P5 420 aa18.87■□□□□ 0.61
COL6A1-204ENST00000486023 IL21Q9HBE4 155 aa18.87■□□□□ 0.61
COL6A1-204ENST00000486023 TCHHQ07283 1943 aa18.86■□□□□ 0.61
COL6A1-204ENST00000486023 AKAP3O75969 853 aa18.86■□□□□ 0.61
COL6A1-204ENST00000486023 KRT13P13646 458 aa18.86■□□□□ 0.61
COL6A1-204ENST00000486023 HMGA1P17096 107 aaKnown RBP18.86■□□□□ 0.61
COL6A1-204ENST00000486023 VAMP7P51809 220 aa18.86■□□□□ 0.61
COL6A1-204ENST00000486023 NUBP1P53384 320 aa18.86■□□□□ 0.61
COL6A1-204ENST00000486023 PRKCQQ04759 706 aa18.86■□□□□ 0.61
COL6A1-204ENST00000486023 FAM160A1Q05DH4 1040 aa18.86■□□□□ 0.61
COL6A1-204ENST00000486023 ZNF667Q5HYK9 610 aa18.86■□□□□ 0.61
COL6A1-204ENST00000486023 FAM171BQ6P995 826 aa18.86■□□□□ 0.61
COL6A1-204ENST00000486023 MFSD6LQ8IWD5 586 aa18.86■□□□□ 0.61
COL6A1-204ENST00000486023 CCDC105Q8IYK2 499 aa18.86■□□□□ 0.61
COL6A1-204ENST00000486023 GUF1Q8N442 669 aaKnown RBP18.86■□□□□ 0.61
COL6A1-204ENST00000486023 PJA1Q8NG27 643 aa18.86■□□□□ 0.61
COL6A1-204ENST00000486023 CSGALNACT1Q8TDX6 532 aa18.86■□□□□ 0.61
COL6A1-204ENST00000486023 DEPDC1BQ8WUY9 529 aa18.86■□□□□ 0.61
COL6A1-204ENST00000486023 ZFYVE19Q96K21 471 aa18.86■□□□□ 0.61
COL6A1-204ENST00000486023 XYLT2Q9H1B5 865 aa18.86■□□□□ 0.61
COL6A1-204ENST00000486023 SMYD3Q9H7B4 428 aa18.86■□□□□ 0.61
COL6A1-204ENST00000486023 TRPC7Q9HCX4 862 aa18.86■□□□□ 0.61
COL6A1-204ENST00000486023 ABCB6Q9NP58 842 aa18.86■□□□□ 0.61
COL6A1-204ENST00000486023 RMND1Q9NWS8 449 aa18.86■□□□□ 0.61
COL6A1-204ENST00000486023 NDRG2Q9UN36 371 aaKnown RBP18.86■□□□□ 0.61
COL6A1-204ENST00000486023 TRAF3IP3Q9Y228 551 aa18.86■□□□□ 0.61
COL6A1-204ENST00000486023 NME7Q9Y5B8 376 aa18.86■□□□□ 0.61
COL6A1-204ENST00000486023 TSC2P49815 1807 aa18.86■□□□□ 0.61
COL6A1-204ENST00000486023 NCANO14594 1321 aa18.85■□□□□ 0.61
COL6A1-204ENST00000486023 TACC1O75410 805 aa18.85■□□□□ 0.61
COL6A1-204ENST00000486023 SMC2O95347 1197 aa18.85■□□□□ 0.61
COL6A1-204ENST00000486023 VNN1O95497 513 aa18.85■□□□□ 0.61
COL6A1-204ENST00000486023 TRIM49P0CI25 452 aa18.85■□□□□ 0.61
COL6A1-204ENST00000486023 TRIM49CP0CI26 452 aa18.85■□□□□ 0.61
COL6A1-204ENST00000486023 PTPN1P18031 435 aaKnown RBP18.85■□□□□ 0.61
COL6A1-204ENST00000486023 RPL13P26373 211 aaKnown RBP18.85■□□□□ 0.61
COL6A1-204ENST00000486023 MRE11P49959 708 aa18.85■□□□□ 0.61
COL6A1-204ENST00000486023 NLRP12P59046 1061 aa18.85■□□□□ 0.61
COL6A1-204ENST00000486023 MAPRE1Q15691 268 aaKnown RBP18.85■□□□□ 0.61
COL6A1-204ENST00000486023 TXNDC8Q6A555 127 aa18.85■□□□□ 0.61
COL6A1-204ENST00000486023 ZNF852Q6ZMS4 543 aa18.85■□□□□ 0.61
COL6A1-204ENST00000486023 LIMS2Q7Z4I7 341 aa18.85■□□□□ 0.61
COL6A1-204ENST00000486023 FAM186BQ8IYM0 893 aa18.85■□□□□ 0.61
COL6A1-204ENST00000486023 MYCBPAPQ8TBZ2 947 aa18.85■□□□□ 0.61
COL6A1-204ENST00000486023 MRPS31Q92665 395 aaKnown RBP18.85■□□□□ 0.61
COL6A1-204ENST00000486023 SMARCE1Q969G3 411 aa18.85■□□□□ 0.61
COL6A1-204ENST00000486023 E2F7Q96AV8 911 aa18.85■□□□□ 0.61
COL6A1-204ENST00000486023 PCED1BQ96HM7 432 aa18.85■□□□□ 0.61
COL6A1-204ENST00000486023 MKNK1Q9BUB5 465 aa18.85■□□□□ 0.61
COL6A1-204ENST00000486023 IRF2BPLQ9H1B7 796 aa18.85■□□□□ 0.61
COL6A1-204ENST00000486023 TRPV4Q9HBA0 871 aa18.85■□□□□ 0.61
COL6A1-204ENST00000486023 PRAMEF12O95522 483 aa18.84■□□□□ 0.61
COL6A1-204ENST00000486023 F11P03951 625 aa18.84■□□□□ 0.61
COL6A1-204ENST00000486023 ANXA13P27216 316 aa18.84■□□□□ 0.61
COL6A1-204ENST00000486023 PSMC2P35998 433 aaKnown RBP18.84■□□□□ 0.61
COL6A1-204ENST00000486023 AVPR1AP37288 418 aa18.84■□□□□ 0.61
COL6A1-204ENST00000486023 PIK3CAP42336 1068 aa18.84■□□□□ 0.61
COL6A1-204ENST00000486023 GCLMP48507 274 aa18.84■□□□□ 0.61
COL6A1-204ENST00000486023 KPNA1P52294 538 aaPredicted RBP18.84■□□□□ 0.61
COL6A1-204ENST00000486023 ANGPT1Q15389 498 aa18.84■□□□□ 0.61
COL6A1-204ENST00000486023 SGSM1Q2NKQ1 1148 aa18.84■□□□□ 0.61
COL6A1-204ENST00000486023 CFAP221Q4G0U5 840 aa18.84■□□□□ 0.61
COL6A1-204ENST00000486023 SPOPLQ6IQ16 392 aa18.84■□□□□ 0.61
COL6A1-204ENST00000486023 SV2AQ7L0J3 742 aa18.84■□□□□ 0.61
COL6A1-204ENST00000486023 ENGASEQ8NFI3 743 aa18.84■□□□□ 0.61
COL6A1-204ENST00000486023 TMC2Q8TDI7 906 aa18.84■□□□□ 0.61
COL6A1-204ENST00000486023 FUBP3Q96I24 572 aaKnown RBP eCLIP18.84■□□□□ 0.61
COL6A1-204ENST00000486023 LRRC3BQ96PB8 259 aa18.84■□□□□ 0.61
COL6A1-204ENST00000486023 MED10Q9BTT4 135 aa18.84■□□□□ 0.61
COL6A1-204ENST00000486023 HOOK1Q9UJC3 728 aaKnown RBP18.84■□□□□ 0.61
COL6A1-204ENST00000486023 PIAS3Q9Y6X2 628 aa18.84■□□□□ 0.61
COL6A1-204ENST00000486023 COL4A3Q01955 1670 aa18.83■□□□□ 0.61
COL6A1-204ENST00000486023 CLDN5O00501 218 aa18.83■□□□□ 0.6
COL6A1-204ENST00000486023 HLA-DRAP01903 254 aa18.83■□□□□ 0.6
COL6A1-204ENST00000486023 GLULP15104 373 aa18.83■□□□□ 0.6
COL6A1-204ENST00000486023 PRCPP42785 496 aa18.83■□□□□ 0.6
COL6A1-204ENST00000486023 CLDN10P78369 228 aa18.83■□□□□ 0.6
COL6A1-204ENST00000486023 IFRD2Q12894 506 aaPredicted RBP18.83■□□□□ 0.6
COL6A1-204ENST00000486023 ORC1Q13415 861 aa18.83■□□□□ 0.6
COL6A1-204ENST00000486023 TMEM150AQ86TG1 271 aa18.83■□□□□ 0.6
COL6A1-204ENST00000486023 CMTM8Q8IZV2 173 aa18.83■□□□□ 0.6
COL6A1-204ENST00000486023 BCO2Q9BYV7 579 aa18.83■□□□□ 0.6
COL6A1-204ENST00000486023 LTB4R2Q9NPC1 389 aa18.83■□□□□ 0.6
COL6A1-204ENST00000486023 SPATA6Q9NWH7 488 aaPredicted RBP18.83■□□□□ 0.6
COL6A1-204ENST00000486023 UXTQ9UBK9 157 aaPredicted RBP18.83■□□□□ 0.6
COL6A1-204ENST00000486023 PCDHA5Q9Y5H7 936 aa18.83■□□□□ 0.6
COL6A1-204ENST00000486023 KMT2EQ8IZD2 1858 aa18.83■□□□□ 0.6
COL6A1-204ENST00000486023 GADD45BO75293 160 aaPredicted RBP18.82■□□□□ 0.6
COL6A1-204ENST00000486023 NOL4O94818 638 aa18.82■□□□□ 0.6
COL6A1-204ENST00000486023 STAU1O95793 577 aaKnown RBP18.82■□□□□ 0.6
COL6A1-204ENST00000486023 ABL1P00519 1130 aa18.82■□□□□ 0.6
COL6A1-204ENST00000486023 P4HA1P13674 534 aa18.82■□□□□ 0.6
COL6A1-204ENST00000486023 HOXD11P31277 338 aaPredicted RBP18.82■□□□□ 0.6
COL6A1-204ENST00000486023 ZACNQ401N2 412 aa18.82■□□□□ 0.6
COL6A1-204ENST00000486023 C1orf220Q5T0J3 134 aa18.82■□□□□ 0.6
COL6A1-204ENST00000486023 ZNF658Q5TYW1 1059 aaPredicted RBP18.82■□□□□ 0.6
COL6A1-204ENST00000486023 INTS8Q75QN2 995 aaKnown RBP18.82■□□□□ 0.6
COL6A1-204ENST00000486023 B3GALNT2Q8NCR0 500 aa18.82■□□□□ 0.6
COL6A1-204ENST00000486023 BPIFB1Q8TDL5 484 aa18.82■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms