RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 PHF2O75151 1096 aa15.05■□□□□ -0
C9orf3-202ENST00000297979 CAND2O75155 1236 aa15.05■□□□□ -0
C9orf3-202ENST00000297979 KRT3P12035 628 aa15.05■□□□□ -0
C9orf3-202ENST00000297979 GRK4P32298 578 aa15.05■□□□□ -0
C9orf3-202ENST00000297979 TNNT3P45378 269 aaPredicted RBP15.05■□□□□ -0
C9orf3-202ENST00000297979 LILRA4P59901 499 aa15.05■□□□□ -0
C9orf3-202ENST00000297979 CASP8Q14790 479 aa15.05■□□□□ -0
C9orf3-202ENST00000297979 PPP1R26Q5T8A7 1209 aaPredicted RBP15.05■□□□□ -0
C9orf3-202ENST00000297979 LIMS2Q7Z4I7 341 aa15.05■□□□□ -0
C9orf3-202ENST00000297979 MRPL10Q7Z7H8 261 aaKnown RBP15.05■□□□□ -0
C9orf3-202ENST00000297979 NIPA2Q8N8Q9 360 aa15.05■□□□□ -0
C9orf3-202ENST00000297979 GSTCDQ8NEC7 633 aa15.05■□□□□ -0
C9orf3-202ENST00000297979 LPPQ93052 612 aa15.05■□□□□ -0
C9orf3-202ENST00000297979 TRAIPQ9BWF2 469 aa15.05■□□□□ -0
C9orf3-202ENST00000297979 SNX25Q9H3E2 840 aa15.05■□□□□ -0
C9orf3-202ENST00000297979 FAM49BQ9NUQ9 324 aa15.05■□□□□ -0
C9orf3-202ENST00000297979 ESYT3A0FGR9 886 aa15.04■□□□□ -0
C9orf3-202ENST00000297979 MGEA5O60502 916 aa15.04■□□□□ -0
C9orf3-202ENST00000297979 EPHB4P54760 987 aa15.04■□□□□ -0
C9orf3-202ENST00000297979 KATNAL2Q8IYT4 538 aa15.04■□□□□ -0
C9orf3-202ENST00000297979 TOP6BLQ8N6T0 577 aa15.04■□□□□ -0
C9orf3-202ENST00000297979 DNAI2Q9GZS0 605 aa15.04■□□□□ -0
C9orf3-202ENST00000297979 MIS12Q9H081 205 aa15.04■□□□□ -0
C9orf3-202ENST00000297979 SLTMQ9NWH9 1034 aaKnown RBP eCLIP15.04■□□□□ -0
C9orf3-202ENST00000297979 A0A1W2PQ45 241 aaPredicted RBP15.04■□□□□ -0
C9orf3-202ENST00000297979 A0A1W2PQY0 241 aa15.04■□□□□ -0
C9orf3-202ENST00000297979 HUS1O60921 280 aa15.04■□□□□ -0
C9orf3-202ENST00000297979 THP07101 528 aa15.04■□□□□ -0
C9orf3-202ENST00000297979 PFKMP08237 780 aa15.04■□□□□ -0
C9orf3-202ENST00000297979 FGFR1P11362 822 aa15.04■□□□□ -0
C9orf3-202ENST00000297979 GNL1P36915 607 aaPredicted RBP15.04■□□□□ -0
C9orf3-202ENST00000297979 DSC3Q14574 896 aa15.04■□□□□ -0
C9orf3-202ENST00000297979 ZNF618Q5T7W0 954 aa15.04■□□□□ -0
C9orf3-202ENST00000297979 ARHGAP17Q68EM7 881 aa15.04■□□□□ -0
C9orf3-202ENST00000297979 AGMOQ6ZNB7 445 aa15.04■□□□□ -0
C9orf3-202ENST00000297979 ADGRF2Q8IZF7 708 aa15.04■□□□□ -0
C9orf3-202ENST00000297979 KRT222Q8N1A0 295 aa15.04■□□□□ -0
C9orf3-202ENST00000297979 PRELID2Q8N945 189 aa15.04■□□□□ -0
C9orf3-202ENST00000297979 ZNF784Q8NCA9 323 aaPredicted RBP15.04■□□□□ -0
C9orf3-202ENST00000297979 CASKIN2Q8WXE0 1202 aa15.04■□□□□ -0
C9orf3-202ENST00000297979 TSPYL2Q9H2G4 693 aaPredicted RBP15.04■□□□□ -0
C9orf3-202ENST00000297979 DPEP3Q9H4B8 488 aa15.04■□□□□ -0
C9orf3-202ENST00000297979 ST7Q9NRC1 585 aa15.04■□□□□ -0
C9orf3-202ENST00000297979 METTL5Q9NRN9 209 aaKnown RBP15.04■□□□□ -0
C9orf3-202ENST00000297979 SAGE1Q9NXZ1 904 aa15.04■□□□□ -0
C9orf3-202ENST00000297979 SQORQ9Y6N5 450 aa15.04■□□□□ -0
C9orf3-202ENST00000297979 ARL5CA6NH57 179 aa15.03■□□□□ -0
C9orf3-202ENST00000297979 FSCN2O14926 492 aa15.03■□□□□ -0
C9orf3-202ENST00000297979 TTI1O43156 1089 aa15.03■□□□□ -0
C9orf3-202ENST00000297979 ZNF623O75123 536 aa15.03■□□□□ -0
C9orf3-202ENST00000297979 CHRNA3P32297 505 aa15.03■□□□□ -0
C9orf3-202ENST00000297979 RFC1P35251 1148 aaPredicted RBP15.03■□□□□ -0
C9orf3-202ENST00000297979 CARSP49589 748 aaKnown RBP15.03■□□□□ -0
C9orf3-202ENST00000297979 JOSD2Q8TAC2 188 aa15.03■□□□□ -0
C9orf3-202ENST00000297979 FNIP1Q8TF40 1166 aa15.03■□□□□ -0
C9orf3-202ENST00000297979 MCRS1Q96EZ8 462 aa15.03■□□□□ -0
C9orf3-202ENST00000297979 MYCBPQ99417 103 aaPredicted RBP15.03■□□□□ -0
C9orf3-202ENST00000297979 HESX1Q9UBX0 185 aa15.03■□□□□ -0
C9orf3-202ENST00000297979 HTTP42858 3142 aa15.03■□□□□ -0
C9orf3-202ENST00000297979 TCRBV7S2A1N4TA0A589 114 aa15.03■□□□□ -0
C9orf3-202ENST00000297979 F8VP50 259 aa15.03■□□□□ -0
C9orf3-202ENST00000297979 SETSIPP0DME0 302 aa15.03■□□□□ -0
C9orf3-202ENST00000297979 GJC1P36383 396 aa15.03■□□□□ -0
C9orf3-202ENST00000297979 HTRA3P83110 453 aa15.03■□□□□ -0
C9orf3-202ENST00000297979 DR1Q01658 176 aa15.03■□□□□ -0
C9orf3-202ENST00000297979 CYP1B1Q16678 543 aa15.03■□□□□ -0
C9orf3-202ENST00000297979 PKDCCQ504Y2 493 aa15.03■□□□□ -0
C9orf3-202ENST00000297979 LRRC38Q5VT99 294 aa15.03■□□□□ -0
C9orf3-202ENST00000297979 EMBQ6PCB8 327 aa15.03■□□□□ -0
C9orf3-202ENST00000297979 TTC30AQ86WT1 665 aa15.03■□□□□ -0
C9orf3-202ENST00000297979 ZDHHC14Q8IZN3 488 aa15.03■□□□□ -0
C9orf3-202ENST00000297979 CRYBG2Q8N1P7 616 aa15.03■□□□□ -0
C9orf3-202ENST00000297979 IFT81Q8WYA0 676 aa15.03■□□□□ -0
C9orf3-202ENST00000297979 STARD7Q9NQZ5 370 aa15.03■□□□□ -0
C9orf3-202ENST00000297979 BHMG1C9JSJ3 638 aaPredicted RBP15.02■□□□□ -0
C9orf3-202ENST00000297979 HCRTO43612 131 aa15.02■□□□□ -0
C9orf3-202ENST00000297979 PDGFRBP09619 1106 aa15.02■□□□□ -0
C9orf3-202ENST00000297979 WARSP23381 471 aaKnown RBP15.02■□□□□ -0
C9orf3-202ENST00000297979 PSMA2P25787 234 aa15.02■□□□□ -0
C9orf3-202ENST00000297979 DHX34Q14147 1143 aaKnown RBP15.02■□□□□ -0
C9orf3-202ENST00000297979 SIX1Q15475 284 aaPredicted RBP15.02■□□□□ -0
C9orf3-202ENST00000297979 CCDC50Q8IVM0 306 aa15.02■□□□□ -0
C9orf3-202ENST00000297979 EXD1Q8NHP7 514 aa15.02■□□□□ -0
C9orf3-202ENST00000297979 MAIP1Q8WWC4 291 aa15.02■□□□□ -0
C9orf3-202ENST00000297979 MAGOHBQ96A72 148 aaKnown RBP15.02■□□□□ -0
C9orf3-202ENST00000297979 TRPV6Q9H1D0 765 aa15.02■□□□□ -0
C9orf3-202ENST00000297979 PTCH2Q9Y6C5 1203 aa15.02■□□□□ -0
C9orf3-202ENST00000297979 A0A0U1RQF3 1178 aa15.02■□□□□ -0
C9orf3-202ENST00000297979 E5RJQ4 531 aa15.02■□□□□ -0
C9orf3-202ENST00000297979 RARAP10276 462 aa15.02■□□□□ -0
C9orf3-202ENST00000297979 CKBP12277 381 aa15.02■□□□□ -0
C9orf3-202ENST00000297979 LMO2P25791 158 aa15.02■□□□□ -0
C9orf3-202ENST00000297979 PLA2G4AP47712 749 aa15.02■□□□□ -0
C9orf3-202ENST00000297979 SCNN1GP51170 649 aa15.02■□□□□ -0
C9orf3-202ENST00000297979 AFF1P51825 1210 aaKnown RBP15.02■□□□□ -0
C9orf3-202ENST00000297979 EIF1ADQ8N9N8 165 aaKnown RBP15.02■□□□□ -0
C9orf3-202ENST00000297979 SLC43A3Q8NBI5 491 aa15.02■□□□□ -0
C9orf3-202ENST00000297979 CCDC97Q96F63 343 aaPredicted RBP15.02■□□□□ -0
C9orf3-202ENST00000297979 GDAP1L1Q96MZ0 367 aa15.02■□□□□ -0
C9orf3-202ENST00000297979 ADAM2Q99965 735 aa15.02■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 93.2 ms