RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 ASB16Q96NS5 453 aa25.58■■□□□ 1.69
SHMT1-206ENST00000579558 MRPL45Q9BRJ2 306 aaKnown RBP25.58■■□□□ 1.69
SHMT1-206ENST00000579558 XYLT2Q9H1B5 865 aa25.58■■□□□ 1.69
SHMT1-206ENST00000579558 SNX25Q9H3E2 840 aa25.58■■□□□ 1.69
SHMT1-206ENST00000579558 ABCB6Q9NP58 842 aa25.58■■□□□ 1.69
SHMT1-206ENST00000579558 NXF1Q9UBU9 619 aaKnown RBP25.58■■□□□ 1.69
SHMT1-206ENST00000579558 CDH9Q9ULB4 789 aa25.58■■□□□ 1.69
SHMT1-206ENST00000579558 PCDHA5Q9Y5H7 936 aa25.58■■□□□ 1.69
SHMT1-206ENST00000579558 MYBPHLA2RUH7 354 aa25.57■■□□□ 1.68
SHMT1-206ENST00000579558 KRBA1A5PL33 1030 aa25.57■■□□□ 1.68
SHMT1-206ENST00000579558 MAPK13O15264 365 aa25.57■■□□□ 1.68
SHMT1-206ENST00000579558 AKAP3O75969 853 aa25.57■■□□□ 1.68
SHMT1-206ENST00000579558 PDGFRBP09619 1106 aa25.57■■□□□ 1.68
SHMT1-206ENST00000579558 FCARP24071 287 aa25.57■■□□□ 1.68
SHMT1-206ENST00000579558 GABRR2P28476 465 aa25.57■■□□□ 1.68
SHMT1-206ENST00000579558 PSMC1P62191 440 aaKnown RBP25.57■■□□□ 1.68
SHMT1-206ENST00000579558 NCOA4Q13772 614 aa25.57■■□□□ 1.68
SHMT1-206ENST00000579558 ZNF699Q32M78 642 aa25.57■■□□□ 1.68
SHMT1-206ENST00000579558 ZCWPW2Q504Y3 356 aa25.57■■□□□ 1.68
SHMT1-206ENST00000579558 IER5LQ5T953 404 aa25.57■■□□□ 1.68
SHMT1-206ENST00000579558 ZNF658Q5TYW1 1059 aaPredicted RBP25.57■■□□□ 1.68
SHMT1-206ENST00000579558 ASTLQ6HA08 431 aaPredicted RBP25.57■■□□□ 1.68
SHMT1-206ENST00000579558 GAREM2Q75VX8 874 aa25.57■■□□□ 1.68
SHMT1-206ENST00000579558 ZSCAN18Q8TBC5 510 aaPredicted RBP25.57■■□□□ 1.68
SHMT1-206ENST00000579558 SMARCD2Q92925 531 aa25.57■■□□□ 1.68
SHMT1-206ENST00000579558 PLA2G2FQ9BZM2 168 aa25.57■■□□□ 1.68
SHMT1-206ENST00000579558 GPR88Q9GZN0 384 aa25.57■■□□□ 1.68
SHMT1-206ENST00000579558 ATXN3LQ9H3M9 355 aa25.57■■□□□ 1.68
SHMT1-206ENST00000579558 ZFP14Q9HCL3 533 aa25.57■■□□□ 1.68
SHMT1-206ENST00000579558 KINO60870 393 aaKnown RBP25.56■■□□□ 1.68
SHMT1-206ENST00000579558 ATP2C2O75185 946 aa25.56■■□□□ 1.68
SHMT1-206ENST00000579558 TACC1O75410 805 aa25.56■■□□□ 1.68
SHMT1-206ENST00000579558 FAM163BP0C2L3 166 aa25.56■■□□□ 1.68
SHMT1-206ENST00000579558 NPR3P17342 541 aa25.56■■□□□ 1.68
SHMT1-206ENST00000579558 RFX1P22670 979 aa25.56■■□□□ 1.68
SHMT1-206ENST00000579558 CYP2F1P24903 491 aa25.56■■□□□ 1.68
SHMT1-206ENST00000579558 GPR15P49685 360 aa25.56■■□□□ 1.68
SHMT1-206ENST00000579558 VAMP7P51809 220 aa25.56■■□□□ 1.68
SHMT1-206ENST00000579558 ADAM9Q13443 819 aa25.56■■□□□ 1.68
SHMT1-206ENST00000579558 CWF19L1Q69YN2 538 aaKnown RBP25.56■■□□□ 1.68
SHMT1-206ENST00000579558 FAM171BQ6P995 826 aa25.56■■□□□ 1.68
SHMT1-206ENST00000579558 FAM186BQ8IYM0 893 aa25.56■■□□□ 1.68
SHMT1-206ENST00000579558 OR6B3Q8NGW1 331 aa25.56■■□□□ 1.68
SHMT1-206ENST00000579558 ARHGEF3Q9NR81 526 aa25.56■■□□□ 1.68
SHMT1-206ENST00000579558 CHMP5Q9NZZ3 219 aa25.56■■□□□ 1.68
SHMT1-206ENST00000579558 STK25O00506 426 aa25.55■■□□□ 1.68
SHMT1-206ENST00000579558 IKBKBO14920 756 aa25.55■■□□□ 1.68
SHMT1-206ENST00000579558 GADD45BO75293 160 aaPredicted RBP25.55■■□□□ 1.68
SHMT1-206ENST00000579558 VNN1O95497 513 aa25.55■■□□□ 1.68
SHMT1-206ENST00000579558 KRT13P13646 458 aa25.55■■□□□ 1.68
SHMT1-206ENST00000579558 PSMC2P35998 433 aaKnown RBP25.55■■□□□ 1.68
SHMT1-206ENST00000579558 GNL1P36915 607 aaPredicted RBP25.55■■□□□ 1.68
SHMT1-206ENST00000579558 PRCPP42785 496 aa25.55■■□□□ 1.68
SHMT1-206ENST00000579558 CLCN5P51795 746 aa25.55■■□□□ 1.68
SHMT1-206ENST00000579558 RPL10AP62906 217 aaKnown RBP25.55■■□□□ 1.68
SHMT1-206ENST00000579558 EDRF1Q3B7T1 1238 aa25.55■■□□□ 1.68
SHMT1-206ENST00000579558 ZACNQ401N2 412 aa25.55■■□□□ 1.68
SHMT1-206ENST00000579558 CFAP221Q4G0U5 840 aa25.55■■□□□ 1.68
SHMT1-206ENST00000579558 ARHGAP15Q53QZ3 475 aa25.55■■□□□ 1.68
SHMT1-206ENST00000579558 ZNF667Q5HYK9 610 aa25.55■■□□□ 1.68
SHMT1-206ENST00000579558 C4orf50Q6ZRC1 276 aa25.55■■□□□ 1.68
SHMT1-206ENST00000579558 INTS8Q75QN2 995 aaKnown RBP25.55■■□□□ 1.68
SHMT1-206ENST00000579558 TMEM105Q8N8V8 129 aa25.55■■□□□ 1.68
SHMT1-206ENST00000579558 SPATA20Q8TB22 786 aa25.55■■□□□ 1.68
SHMT1-206ENST00000579558 FUBP3Q96I24 572 aaKnown RBP eCLIP25.55■■□□□ 1.68
SHMT1-206ENST00000579558 GCNAQ96QF7 691 aa25.55■■□□□ 1.68
SHMT1-206ENST00000579558 VRTNQ9H8Y1 702 aa25.55■■□□□ 1.68
SHMT1-206ENST00000579558 CRTAC1Q9NQ79 661 aa25.55■■□□□ 1.68
SHMT1-206ENST00000579558 MUC6Q6W4X9 2439 aa25.55■■□□□ 1.68
SHMT1-206ENST00000579558 CDC25CP30307 473 aa25.54■■□□□ 1.68
SHMT1-206ENST00000579558 ANP32AP39687 249 aaKnown RBP25.54■■□□□ 1.68
SHMT1-206ENST00000579558 PFKPQ01813 784 aa25.54■■□□□ 1.68
SHMT1-206ENST00000579558 MAPRE1Q15691 268 aaKnown RBP25.54■■□□□ 1.68
SHMT1-206ENST00000579558 DDR2Q16832 855 aa25.54■■□□□ 1.68
SHMT1-206ENST00000579558 C1orf220Q5T0J3 134 aa25.54■■□□□ 1.68
SHMT1-206ENST00000579558 STXBP5Q5T5C0 1151 aa25.54■■□□□ 1.68
SHMT1-206ENST00000579558 SDHAF4Q5VUM1 108 aa25.54■■□□□ 1.68
SHMT1-206ENST00000579558 SV2AQ7L0J3 742 aa25.54■■□□□ 1.68
SHMT1-206ENST00000579558 MYLPFQ96A32 169 aa25.54■■□□□ 1.68
SHMT1-206ENST00000579558 PRRX2Q99811 253 aa25.54■■□□□ 1.68
SHMT1-206ENST00000579558 GTPBP4Q9BZE4 634 aaKnown RBP25.54■■□□□ 1.68
SHMT1-206ENST00000579558 IL21Q9HBE4 155 aa25.54■■□□□ 1.68
SHMT1-206ENST00000579558 MAGEC2Q9UBF1 373 aaPredicted RBP25.54■■□□□ 1.68
SHMT1-206ENST00000579558 TRIM49P0CI25 452 aa25.53■■□□□ 1.68
SHMT1-206ENST00000579558 TRIM49CP0CI26 452 aa25.53■■□□□ 1.68
SHMT1-206ENST00000579558 CSH1P0DML2 217 aa25.53■■□□□ 1.68
SHMT1-206ENST00000579558 CSH2P0DML3 217 aa25.53■■□□□ 1.68
SHMT1-206ENST00000579558 VIPR2P41587 438 aa25.53■■□□□ 1.68
SHMT1-206ENST00000579558 GRM2Q14416 872 aa25.53■■□□□ 1.68
SHMT1-206ENST00000579558 COBLL1Q53SF7 1204 aa25.53■■□□□ 1.68
SHMT1-206ENST00000579558 GPR158Q5T848 1215 aa25.53■■□□□ 1.68
SHMT1-206ENST00000579558 SCN4BQ8IWT1 228 aa25.53■■□□□ 1.68
SHMT1-206ENST00000579558 ELOA2Q8IYF1 753 aaPredicted RBP25.53■■□□□ 1.68
SHMT1-206ENST00000579558 STKLD1Q8NE28 680 aa25.53■■□□□ 1.68
SHMT1-206ENST00000579558 ELMO3Q96BJ8 720 aa25.53■■□□□ 1.68
SHMT1-206ENST00000579558 SMYD3Q9H7B4 428 aa25.53■■□□□ 1.68
SHMT1-206ENST00000579558 TBC1D17Q9HA65 648 aa25.53■■□□□ 1.68
SHMT1-206ENST00000579558 TRPV4Q9HBA0 871 aa25.53■■□□□ 1.68
SHMT1-206ENST00000579558 NME7Q9Y5B8 376 aa25.53■■□□□ 1.68
SHMT1-206ENST00000579558 HMGA1P17096 107 aaKnown RBP25.52■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms