RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 IL21Q9HBE4 155 aa17.2■□□□□ 0.34
CCDC88C-209ENST00000554872 GDPD2Q9HCC8 539 aa17.2■□□□□ 0.34
CCDC88C-209ENST00000554872 ZNF334Q9HCZ1 680 aaPredicted RBP17.2■□□□□ 0.34
CCDC88C-209ENST00000554872 TMLHEQ9NVH6 421 aa17.2■□□□□ 0.34
CCDC88C-209ENST00000554872 OBP2AQ9NY56 170 aa17.2■□□□□ 0.34
CCDC88C-209ENST00000554872 ABI2Q9NYB9 513 aaPredicted RBP17.2■□□□□ 0.34
CCDC88C-209ENST00000554872 CDH9Q9ULB4 789 aa17.2■□□□□ 0.34
CCDC88C-209ENST00000554872 COL4A2P08572 1712 aa17.19■□□□□ 0.34
CCDC88C-209ENST00000554872 NUP210Q8TEM1 1887 aaPredicted RBP17.19■□□□□ 0.34
CCDC88C-209ENST00000554872 A0A1W2PRU2 124 aa17.19■□□□□ 0.34
CCDC88C-209ENST00000554872 IKBKBO14920 756 aa17.19■□□□□ 0.34
CCDC88C-209ENST00000554872 CALUO43852 315 aaPredicted RBP17.19■□□□□ 0.34
CCDC88C-209ENST00000554872 SOAT2O75908 522 aa17.19■□□□□ 0.34
CCDC88C-209ENST00000554872 CST3P01034 146 aaPredicted RBP17.19■□□□□ 0.34
CCDC88C-209ENST00000554872 RPL10AP62906 217 aaKnown RBP17.19■□□□□ 0.34
CCDC88C-209ENST00000554872 TEAD2Q15562 447 aa17.19■□□□□ 0.34
CCDC88C-209ENST00000554872 ZCWPW2Q504Y3 356 aa17.19■□□□□ 0.34
CCDC88C-209ENST00000554872 COBLL1Q53SF7 1204 aa17.19■□□□□ 0.34
CCDC88C-209ENST00000554872 CCDC105Q8IYK2 499 aa17.19■□□□□ 0.34
CCDC88C-209ENST00000554872 FLCNQ8NFG4 579 aa17.19■□□□□ 0.34
CCDC88C-209ENST00000554872 ENGASEQ8NFI3 743 aa17.19■□□□□ 0.34
CCDC88C-209ENST00000554872 SPATA20Q8TB22 786 aa17.19■□□□□ 0.34
CCDC88C-209ENST00000554872 ZSCAN18Q8TBC5 510 aaPredicted RBP17.19■□□□□ 0.34
CCDC88C-209ENST00000554872 TRMT2BQ96GJ1 504 aaKnown RBP17.19■□□□□ 0.34
CCDC88C-209ENST00000554872 MYRFLQ96LU7 910 aa17.19■□□□□ 0.34
CCDC88C-209ENST00000554872 CA14Q9ULX7 337 aa17.19■□□□□ 0.34
CCDC88C-209ENST00000554872 LRRIQ3A6PVS8 624 aaPredicted RBP17.18■□□□□ 0.34
CCDC88C-209ENST00000554872 CSH1P0DML2 217 aa17.18■□□□□ 0.34
CCDC88C-209ENST00000554872 CSH2P0DML3 217 aa17.18■□□□□ 0.34
CCDC88C-209ENST00000554872 HMGA1P17096 107 aaKnown RBP17.18■□□□□ 0.34
CCDC88C-209ENST00000554872 PSMC3P17980 439 aa17.18■□□□□ 0.34
CCDC88C-209ENST00000554872 MLLT6P55198 1093 aaPredicted RBP17.18■□□□□ 0.34
CCDC88C-209ENST00000554872 FAM160A1Q05DH4 1040 aa17.18■□□□□ 0.34
CCDC88C-209ENST00000554872 SNW1Q13573 536 aaKnown RBP17.18■□□□□ 0.34
CCDC88C-209ENST00000554872 MLF2Q15773 248 aaPredicted RBP17.18■□□□□ 0.34
CCDC88C-209ENST00000554872 ARHGAP15Q53QZ3 475 aa17.18■□□□□ 0.34
CCDC88C-209ENST00000554872 TDRD10Q5VZ19 366 aaKnown RBP17.18■□□□□ 0.34
CCDC88C-209ENST00000554872 VITQ6UXI7 678 aa17.18■□□□□ 0.34
CCDC88C-209ENST00000554872 C4orf50Q6ZRC1 276 aa17.18■□□□□ 0.34
CCDC88C-209ENST00000554872 ELOA2Q8IYF1 753 aaPredicted RBP17.18■□□□□ 0.34
CCDC88C-209ENST00000554872 TIGD1Q96MW7 591 aa17.18■□□□□ 0.34
CCDC88C-209ENST00000554872 LPIN3Q9BQK8 851 aa17.18■□□□□ 0.34
CCDC88C-209ENST00000554872 SYT15Q9BQS2 421 aa17.18■□□□□ 0.34
CCDC88C-209ENST00000554872 GTPBP4Q9BZE4 634 aaKnown RBP17.18■□□□□ 0.34
CCDC88C-209ENST00000554872 PLA2G2FQ9BZM2 168 aa17.18■□□□□ 0.34
CCDC88C-209ENST00000554872 RMND1Q9NWS8 449 aa17.18■□□□□ 0.34
CCDC88C-209ENST00000554872 DLGAP2Q9P1A6 1054 aa17.18■□□□□ 0.34
CCDC88C-209ENST00000554872 CIZ1Q9ULV3 898 aaPredicted RBP17.18■□□□□ 0.34
CCDC88C-209ENST00000554872 NOL4O94818 638 aa17.17■□□□□ 0.34
CCDC88C-209ENST00000554872 C4BPAP04003 597 aaKnown RBP17.17■□□□□ 0.34
CCDC88C-209ENST00000554872 GJA1P17302 382 aa17.17■□□□□ 0.34
CCDC88C-209ENST00000554872 DDX6P26196 483 aaKnown RBP eCLIP17.17■□□□□ 0.345e-6■■■■■ 46.6
CCDC88C-209ENST00000554872 GABRR2P28476 465 aa17.17■□□□□ 0.34
CCDC88C-209ENST00000554872 FCHO2Q0JRZ9 810 aa17.17■□□□□ 0.34
CCDC88C-209ENST00000554872 TRPC3Q13507 836 aa17.17■□□□□ 0.34
CCDC88C-209ENST00000554872 EDRF1Q3B7T1 1238 aa17.17■□□□□ 0.34
CCDC88C-209ENST00000554872 ZACNQ401N2 412 aa17.17■□□□□ 0.34
CCDC88C-209ENST00000554872 SLC44A4Q53GD3 710 aa17.17■□□□□ 0.34
CCDC88C-209ENST00000554872 VSTM1Q6UX27 236 aa17.17■□□□□ 0.34
CCDC88C-209ENST00000554872 MFSD6LQ8IWD5 586 aa17.17■□□□□ 0.34
CCDC88C-209ENST00000554872 PJA1Q8NG27 643 aa17.17■□□□□ 0.34
CCDC88C-209ENST00000554872 IRF7Q92985 503 aa17.17■□□□□ 0.34
CCDC88C-209ENST00000554872 GSDMAQ96QA5 445 aa17.17■□□□□ 0.34
CCDC88C-209ENST00000554872 GCNAQ96QF7 691 aa17.17■□□□□ 0.34
CCDC88C-209ENST00000554872 TRMT61BQ9BVS5 477 aaKnown RBP17.17■□□□□ 0.34
CCDC88C-209ENST00000554872 TASP1Q9H6P5 420 aa17.17■□□□□ 0.34
CCDC88C-209ENST00000554872 UXTQ9UBK9 157 aaPredicted RBP17.17■□□□□ 0.34
CCDC88C-209ENST00000554872 GTF3C4Q9UKN8 822 aa17.17■□□□□ 0.34
CCDC88C-209ENST00000554872 FRMD4BQ9Y2L6 1034 aa17.17■□□□□ 0.34
CCDC88C-209ENST00000554872 KANSL1LA0AUZ9 987 aa17.16■□□□□ 0.34
CCDC88C-209ENST00000554872 MYBPHLA2RUH7 354 aa17.16■□□□□ 0.34
CCDC88C-209ENST00000554872 GOLGA6L4A6NEF3 574 aa17.16■□□□□ 0.34
CCDC88C-209ENST00000554872 ARNTLO00327 626 aa17.16■□□□□ 0.34
CCDC88C-209ENST00000554872 PI15O43692 258 aa17.16■□□□□ 0.34
CCDC88C-209ENST00000554872 GLULP15104 373 aa17.16■□□□□ 0.34
CCDC88C-209ENST00000554872 ACAT1P24752 427 aaKnown RBP17.16■□□□□ 0.34
CCDC88C-209ENST00000554872 MAGEA9P43362 315 aa17.16■□□□□ 0.34
CCDC88C-209ENST00000554872 CASP4P49662 377 aa17.16■□□□□ 0.34
CCDC88C-209ENST00000554872 MYL6P60660 151 aa17.16■□□□□ 0.34
CCDC88C-209ENST00000554872 TNNC1P63316 161 aa17.16■□□□□ 0.34
CCDC88C-209ENST00000554872 WDR72Q3MJ13 1102 aa17.16■□□□□ 0.34
CCDC88C-209ENST00000554872 INTS8Q75QN2 995 aaKnown RBP17.16■□□□□ 0.34
CCDC88C-209ENST00000554872 TMEM150AQ86TG1 271 aa17.16■□□□□ 0.34
CCDC88C-209ENST00000554872 SPATA2LQ8IUW3 424 aaPredicted RBP17.16■□□□□ 0.34
CCDC88C-209ENST00000554872 ST13P5Q8NFI4 369 aaPredicted RBP17.16■□□□□ 0.34
CCDC88C-209ENST00000554872 MYCBPAPQ8TBZ2 947 aa17.16■□□□□ 0.34
CCDC88C-209ENST00000554872 FAM200AQ8TCP9 573 aa17.16■□□□□ 0.34
CCDC88C-209ENST00000554872 TAF4BQ92750 862 aa17.16■□□□□ 0.34
CCDC88C-209ENST00000554872 MSANTD3Q96H12 275 aa17.16■□□□□ 0.34
CCDC88C-209ENST00000554872 SPATA17Q96L03 361 aa17.16■□□□□ 0.34
CCDC88C-209ENST00000554872 PI4K2AQ9BTU6 479 aa17.16■□□□□ 0.34
CCDC88C-209ENST00000554872 ATXN3LQ9H3M9 355 aa17.16■□□□□ 0.34
CCDC88C-209ENST00000554872 SLITRK6Q9H5Y7 841 aa17.16■□□□□ 0.34
CCDC88C-209ENST00000554872 CRTAC1Q9NQ79 661 aa17.16■□□□□ 0.34
CCDC88C-209ENST00000554872 SIT1Q9Y3P8 196 aa17.16■□□□□ 0.34
CCDC88C-209ENST00000554872 NCANO14594 1321 aa17.16■□□□□ 0.34
CCDC88C-209ENST00000554872 PTPRDP23468 1912 aa17.15■□□□□ 0.34
CCDC88C-209ENST00000554872 F11P03951 625 aa17.15■□□□□ 0.34
CCDC88C-209ENST00000554872 NR2F2P24468 414 aa17.15■□□□□ 0.34
CCDC88C-209ENST00000554872 CYP2F1P24903 491 aa17.15■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms